DR908139

Overview
NameDR908139
Unique NameDR908139
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length713
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12570 contig Csv1_Contig12570:45..757. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DR908139 vs. ExPASy Swiss-Prot
Match: Y5175_ARATH (UPF0706 protein At5g01750 OS=Arabidopsis thaliana GN=At5g01750 PE=1 SV=1)

HSP 1 Score: 259.225 bits (661), Expect = 1.546e-68
Identity = 116/188 (61.70%), Postives = 154/188 (81.91%), Query Frame = 2 
Query:  149 VIGPQYCLPYPVDLSIVRKFLTLTDGSFAVTDINDNLMFKVKEKIISLHDKRTLLDPAGNPIVTITEKVFSLHEKHFAFRGASTDTKDLLFTVERSSVIQLKTTLNVYLASNTKQDVCDFKIKGSWTEKSCVVYAGESNTIVAQMHKKTTVGSVLLNKDRFTVTVYPNIDYAFIVALIVILDDINGDD 712
            V+ P+YC PYP+D++IVRK ++LTDG+F +TD+N NL+FKVKE +  LHDKR LLD +G P+VT+ EK+ S+H++   FRG STD +DLL+TV+RSS++QLKT L+V+L  N  +  CDF++KGSW E+SCVVYAGES+ IVAQMH+K TV SV L KD F+VTVYPN+DYAFI +L+VILDD+N +D
Sbjct:   27 VVDPKYCAPYPIDMAIVRKMMSLTDGNFVITDVNGNLLFKVKEPVFGLHDKRVLLDGSGTPVVTLREKMVSMHDRWQVFRGGSTDQRDLLYTVKRSSMLQLKTKLDVFLGHNKDEKRCDFRVKGSWLERSCVVYAGESDAIVAQMHRKHTVQSVFLGKDNFSVTVYPNVDYAFIASLVVILDDVNRED 214
The following BLAST results are available for this feature:
BLAST of DR908139 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y5175_ARATH1.546e-6861.70UPF0706 protein At5g01750 OS=Arabidopsis thaliana ... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_16267 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-40_D05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908139 ID=DR908139; Name=DR908139; organism=Citrus sinensis; type=EST; length=713bp
GGCTCGCAATCATATCATGGAGCAACCAATTACACAACACACTGCAGACC
AGATGCCACAGCAACCAAACCCACAGCAAATTCCACAGCAGCCAATTAAT
ATTCCAGCGCCAACTCCAGCACCAACAATATATTCCAATCCGGTTTCGGT
AATCGGCCCTCAGTATTGCCTTCCTTATCCCGTTGATCTATCCATCGTTA
GAAAGTTTTTAACCCTCACCGATGGCAGTTTTGCTGTCACTGATATTAAT
GACAATCTCATGTTCAAAGTGAAAGAAAAAATTATAAGCCTCCATGACAA
GCGGACTCTACTTGATCCTGCTGGCAACCCTATTGTCACCATAACAGAGA
AAGTTTTTTCCTTGCATGAGAAGCATTTTGCATTCAGGGGGGCTAGCACA
GACACTAAAGATCTTCTCTTTACTGTGGAAAGATCTTCAGTGATCCAATT
GAAGACCACTTTGAACGTCTACCTGGCAAGTAACACCAAACAAGATGTTT
GCGATTTCAAGATCAAAGGCAGCTGGACTGAAAAATCTTGTGTTGTATAT
GCTGGAGAATCAAACACAATTGTTGCCCAGATGCACAAAAAGACAACTGT
GGGCAGTGTCTTGCTCAACAAGGACAGGTTCACTGTGACAGTTTATCCGA
ACATAGACTATGCGTTTATAGTAGCCCTGATCGTGATCCTCGATGATATC
AACGGTGATGATG
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