DR908138

Overview
NameDR908138
Unique NameDR908138
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length713
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11836 contig Csv1_Contig11836:729..1441. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR908138 vs. ExPASy Swiss-Prot
Match: PGAP3_DANRE (Post-GPI attachment to proteins factor 3 OS=Danio rerio GN=pgap3 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.550e-28
Identity = 65/160 (40.62%), Postives = 96/160 (60.00%), Query Frame = 3
Query:    3 NSWFWSAVFHSRDVELTEKLDCSSAVALLGFNFILAILRAFSVRDEAARVMVAAPLIAFVTTHILYLNFYKLDHGLNMKVCLAMGVAQLLIWAIWAGVTRH--PSRWKLWLVV-VGEGLAMLLQIYDFPPYRGFVDAHALYHAANIPLTYLWWSFIRDDS 473
            N+WFWS VFH+RD  LTEK+D   A A++ ++  L  +R   +R  A   MV   LI   T+H+ YL F   D+G NM    ++G+  LL W  W  + R   P  W+  +VV +  GLA LL++ DFPP    +DAHA++H + +P+ +L++SF+ DDS
Sbjct:  144 NAWFWSTVFHTRDTYLTEKMDYFCASAVILYSIYLCCVRTLGLRRPAISSMVGVLLILAFTSHVSYLTFVSFDYGYNMAANASIGIINLLWWLCWCWLNRRILPYWWRCGMVVLLLHGLA-LLELLDFPPLFWVLDAHAVWHLSTVPVHFLFYSFLIDDS 302          
BLAST of DR908138 vs. ExPASy Swiss-Prot
Match: PGAP3_XENLA (Post-GPI attachment to proteins factor 3 OS=Xenopus laevis GN=pgap3 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.261e-26
Identity = 61/159 (38.36%), Postives = 88/159 (55.35%), Query Frame = 3
Query:    3 NSWFWSAVFHSRDVELTEKLDCSSAVALLGFNFILAILRAFSVRDEAARVMVAAPLIAFVTTHILYLNFYKLDHGLNMKVCLAMGVAQLLIWAIWAGVTR--HPSRWKLWLVVVGEGLAMLLQIYDFPPYRGFVDAHALYHAANIPLTYLWWSFIRDDS 473
            N+WFWS +FH+RD  LTEK+D   A +++  +  L  +R F ++  +      A L+     HI YL   + D+  NM    + G+  L+ W  W    R   P  WK  LVVV      LL++ DFPP    +DAHAL+H + IPL +L++SF+RDDS
Sbjct:  143 NAWFWSTIFHTRDTALTEKMDYFCASSVILHSIYLCCMRTFGLQYPSIANAFGAFLVLLFACHISYLTLGRFDYSYNMAANTSFGIVNLMWWLAWCMWRRFHQPYLWKCVLVVVLLQSLALLELLDFPPVMWILDAHALWHFSTIPLHFLFYSFLRDDS 301          
BLAST of DR908138 vs. ExPASy Swiss-Prot
Match: PGAP3_XENTR (Post-GPI attachment to proteins factor 3 OS=Xenopus tropicalis GN=pgap3 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.239e-25
Identity = 58/159 (36.48%), Postives = 87/159 (54.72%), Query Frame = 3
Query:    3 NSWFWSAVFHSRDVELTEKLDCSSAVALLGFNFILAILRAFSVRDEAARVMVAAPLIAFVTTHILYLNFYKLDHGLNMKVCLAMGVAQLLIWAIWAGVTR--HPSRWKLWLVVVGEGLAMLLQIYDFPPYRGFVDAHALYHAANIPLTYLWWSFIRDDS 473
            N+WFWS +FH+RD  LTEK+D   A +++  +  L  +R F ++  +      A L+     H+ YL   + D+  NM      GV  L+ W  W    R   P  WK  LVV+      LL++ DFPP    +DAHAL+H + +PL +L++SF++DDS
Sbjct:  143 NAWFWSTIFHTRDTALTEKMDYFCASSVILHSIYLCCMRTFGLQYPSIANGFGAFLVLLFACHVSYLTLGRFDYSYNMAANTGFGVLNLMWWLAWCFRRRFHQPYLWKCVLVVISLQSLALLELLDFPPVMWILDAHALWHFSTVPLHFLFYSFLKDDS 301          
BLAST of DR908138 vs. ExPASy Swiss-Prot
Match: PGAP3_MOUSE (Post-GPI attachment to proteins factor 3 OS=Mus musculus GN=Pgap3 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.206e-24
Identity = 59/160 (36.88%), Postives = 94/160 (58.75%), Query Frame = 3
Query:    3 NSWFWSAVFHSRDVELTEKLDCSSAVALLGFNFILAILRAFSVRDEAARVMVAAPLIAFVTTHILYLNFYKLDHGLNMKVCLAMGVAQLLIWAIWAGVTRH---PSRWKLWLVVVGEGLAMLLQIYDFPPYRGFVDAHALYHAANIPLTYLWWSFIRDDS 473
            N+WFWS VFH+RD +LTEK+D   A A++  +  L  +R   ++  +      A L+  +T HI YL+    D+G NM   +A+G+  L  W +W    R     +R  + +VV+ +GL+ LL++ DFPP    +DAHA++H + IP+  L++ F+ DDS
Sbjct:  148 NAWFWSTVFHTRDTDLTEKMDYFCASAVILHSVYLCCVRTVGLQHPSVASAFGALLLLLLTGHISYLSLVHFDYGYNMMANVAIGLVNLAWWLVWCLRNRQRLPHTRRCMVVVVLLQGLS-LLELLDFPPLFWVLDAHAIWHISTIPVHTLFFRFLEDDS 306          
BLAST of DR908138 vs. ExPASy Swiss-Prot
Match: PGAP3_HUMAN (Post-GPI attachment to proteins factor 3 OS=Homo sapiens GN=PGAP3 PE=2 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 3.375e-23
Identity = 60/174 (34.48%), Postives = 97/174 (55.75%), Query Frame = 3
Query:    3 NSWFWSAVFHSRDVELTEKLDCSSAVALLGFNFILAILRAFSVRDEAARVMVAAPLIAFVTTHILYLNFYKLDHGLNMKVCLAMGVAQLLIWAIWA--GVTRHPSRWKLWLVVVGEGLAMLLQIYDFPPYRGFVDAHALYHAANIPLTYLWWSFIRDDSEFRTTALLKKPK*NF 518
            N+WFWS VFH+RD +LTEK+D   A  ++  +  L  +R   ++  A      A L+  +T H+ YL+  + D+G N+   +A+G+  ++ W  W      R P   K  +VV+      LL++ DFPP    +DAHA++H + IP+  L++SF+ DDS +    LLK+ +  F
Sbjct:  148 NAWFWSTVFHTRDTDLTEKMDYFCASTVILHSIYLCCVRTVGLQHPAVVSAFRALLLLMLTVHVSYLSLIRFDYGYNLVANVAIGLVNVVWWLAWCLWNQRRLPHVRKCVVVVLLLQGLSLLELLDFPPLFWVLDAHAIWHISTIPVHVLFFSFLEDDSLY----LLKESEDKF 317          
BLAST of DR908138 vs. ExPASy Swiss-Prot
Match: PGAP3_BOVIN (Post-GPI attachment to proteins factor 3 OS=Bos taurus GN=PGAP3 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.756e-23
Identity = 58/160 (36.25%), Postives = 94/160 (58.75%), Query Frame = 3
Query:    3 NSWFWSAVFHSRDVELTEKLDCSSAVALLGFNFILAILRAFSVRDEAARVMVAAPLIAFVTTHILYLNFYKLDHGLNMKVCLAMGV---AQLLIWAIWAGVTRHPSRWKLWLVVVGEGLAMLLQIYDFPPYRGFVDAHALYHAANIPLTYLWWSFIRDDS 473
            N+WFWS VFH+RD +LTEK+D   A  ++  +  L  +R   ++  A      A L+  +T H+ YL+    D+G NM   +A+G+   A  L W +W     H  +  + +V++ +GL+ LL++ DFPP    +DAHA++H + IP+  L++SF+ DDS
Sbjct:  148 NAWFWSTVFHTRDTDLTEKMDYFCASTVILHSIYLCCVRTVGLQHPAMASAFRALLLLLLTAHVSYLSLIHFDYGYNMAANVAIGLLNAAWWLAWCLWNQRLPHVHKC-VAVVLLLQGLS-LLELLDFPPLFWVLDAHAIWHISTIPVHVLFFSFLEDDS 305          
BLAST of DR908138 vs. ExPASy Swiss-Prot
Match: PGAP3_CRIGR (Post-GPI attachment to proteins factor 3 OS=Cricetulus griseus GN=PGAP3 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.312e-22
Identity = 60/175 (34.29%), Postives = 99/175 (56.57%), Query Frame = 3
Query:    3 NSWFWSAVFHSRDVELTEKLDCSSAVALLGFNFILAILRAFSVRDEAARVMVAAPLIAFVTTHILYLNFYKLDHGLNMKVCLAMGVAQLLIWAIWA--GVTRHP-SRWKLWLVVVGEGLAMLLQIYDFPPYRGFVDAHALYHAANIPLTYLWWSFIRDDSEFRTTALLKKPK*NF 518
            N+WFWS VFH+RD +LTEK+D   A A++  +  L  +R   ++  +      A L+  +  H  YL+  + D+  NM   +A+G+  L  W  W      R P +R  + +V++ +GL+ LL++ DFPP    +DAHA++H + IP+  L++ F+ DDS +    LLK+ +  F
Sbjct:  148 NAWFWSTVFHTRDTDLTEKMDYFCASAVILHSIYLCCVRTVGLQHPSVARAFGATLLLMLLLHTSYLSLVRFDYSYNMMANVAIGLVNLAWWLAWCLRNHRRLPHTRKCVAVVLLLQGLS-LLELLDFPPLFWVLDAHAIWHISTIPVHVLFFRFLEDDSLY----LLKESEAKF 317          
BLAST of DR908138 vs. ExPASy Swiss-Prot
Match: PER1_SCHPO (Protein PER1 homolog OS=Schizosaccharomyces pombe GN=SPAC823.07 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.158e-21
Identity = 53/160 (33.12%), Postives = 85/160 (53.12%), Query Frame = 3
Query:    3 NSWFWSAVFHSRDVELTEKLDCSSAVALLGFNFILAILRAFSVRDEAARVM----VAAPLIAFVTTHILYLNFYKLDHGLNMKVCLAMGVAQLLIWAIWAGVTRHPSR-WKLW--LVVVGEGLAMLLQIYDFPPYRGFVDAHALYHAANIPLTYLWWSFI 461
            N+W WS+VFH RD  +TEKLD  SA A + F     ++    +       +    +    IA    H+ YL+FY  D+G NMK  +A+G+ Q ++W  ++   R+    W  W   +V    LA  L+++DF P    +DAHAL+H + +P+T+  + F+
Sbjct:  150 NAWVWSSVFHIRDTPITEKLDYFSAGAFVLFGSYCTLILMLRLDQLPGGKLLCWIIGVIFIAAFIAHVSYLSFYSFDYGYNMKANVAVGLVQNILWYYYSWSNRNSGLYWTRWPAYIVTSLMLATSLELFDFSPIANLIDAHALWHLSTVPITHYLYGFV 309          
BLAST of DR908138 vs. ExPASy Swiss-Prot
Match: PGAP3_DROME (Post-GPI attachment to proteins factor 3 OS=Drosophila melanogaster GN=CG3271 PE=1 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 5.043e-19
Identity = 49/155 (31.61%), Postives = 82/155 (52.90%), Query Frame = 3
Query:    3 NSWFWSAVFHSRDVELTEKLDCSSAVALLGFNFILAILRAFSVRDEAARVMVAAPLIAFVTTHILYLNFYKLDHGLNMKVCLAMGVAQLLIWAIWAGV--TRHPSRWKLWLVVVGEGLAMLLQIYDFPPYRGFVDAHALYHAANIPLTYLWWSFI 461
            N W WSA+FH+RD  LTE LD + A +++  +  + ++R         R ++    +++   +  YL+  + ++  NM V +A GV   + W +W     TR P   ++    +   LAM L++ DFPP    +DAHAL+H A IPL  L++  +
Sbjct:  155 NGWIWSAIFHTRDFPLTELLDYAFAYSIILCSLYVMVMRMLHRYSLFLRGVITLAFLSYYINYFAYLSVGRFNYAFNMMVNVATGVIAAVGWFVWCHFVRTRRPYFRRILRFYILMALAMSLELLDFPPILWILDAHALWHLATIPLASLYYECV 309          
The following BLAST results are available for this feature:
BLAST of DR908138 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
PGAP3_DANRE4.550e-2840.63Post-GPI attachment to proteins factor 3 OS=Danio ... [more]
PGAP3_XENLA3.261e-2638.36Post-GPI attachment to proteins factor 3 OS=Xenopu... [more]
PGAP3_XENTR1.239e-2536.48Post-GPI attachment to proteins factor 3 OS=Xenopu... [more]
PGAP3_MOUSE5.206e-2436.88Post-GPI attachment to proteins factor 3 OS=Mus mu... [more]
PGAP3_HUMAN3.375e-2334.48Post-GPI attachment to proteins factor 3 OS=Homo s... [more]
PGAP3_BOVIN5.756e-2336.25Post-GPI attachment to proteins factor 3 OS=Bos ta... [more]
PGAP3_CRIGR8.312e-2234.29Post-GPI attachment to proteins factor 3 OS=Cricet... [more]
PER1_SCHPO3.158e-2133.13Protein PER1 homolog OS=Schizosaccharomyces pombe ... [more]
PGAP3_DROME5.043e-1931.61Post-GPI attachment to proteins factor 3 OS=Drosop... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_16266 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-36_G02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908138 ID=DR908138; Name=DR908138; organism=Citrus sinensis; type=EST; length=713bp
TGAACTCCTGGTTCTGGAGTGCTGTTTTCCACAGTCGAGATGTTGAATTG
ACAGAGAAGCTCGATTGTTCTTCTGCTGTAGCATTACTTGGTTTTAATTT
CATTCTAGCAATTCTGCGAGCTTTCAGCGTCAGAGACGAGGCTGCTAGGG
TCATGGTTGCTGCTCCATTGATTGCATTTGTGACAACTCACATCTTGTAC
CTGAATTTCTATAAACTTGATCATGGCCTAAACATGAAAGTATGTCTAGC
AATGGGCGTAGCTCAACTTCTCATTTGGGCAATTTGGGCTGGTGTTACTC
GCCACCCATCACGCTGGAAGCTGTGGTTGGTGGTTGTTGGAGAAGGCTTA
GCCATGCTTTTGCAGATATATGATTTCCCACCCTACCGGGGTTTTGTGGA
TGCTCATGCTTTATATCATGCTGCTAATATTCCTCTAACATATCTTTGGT
GGAGCTTTATCAGAGATGACAGTGAGTTCAGGACAACTGCTCTCCTGAAA
AAACCAAAGTGAAATTTCTTCAATCAATACATGCACCAATCATTTCCAGC
CGATTGTACCATGCTCGCCAGCTATTCAACATCAGAATGTATTCTCTTAT
CCCCTGATTTCTATATTTTCCAGACTGCTCAACCTGGCAGGTCCTGTTGT
TTCAAAATTTTTGTTTTTCATGGCACGTCATTTTTCTTGGAGTCTATGAG
ATATGTTCTTGTA
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