DR908134

Overview
NameDR908134
Unique NameDR908134
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length714
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DR908134_ssr75 microsatellite DR908134_ssr75:75..86. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10189 contig Csv1_Contig10189:30..743. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DR908134 vs. ExPASy Swiss-Prot
Match: BH036_ARATH (Transcription factor bHLH36 OS=Arabidopsis thaliana GN=BHLH36 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.887e-14
Identity = 50/168 (29.76%), Postives = 88/168 (52.38%), Query Frame = 1 
Query:   94 KIERKTIEKNRRDQMKNLYSTLKSLLPNQPSKEELSLPDQVDEAINYIKMLETKLKECKKRKESLQGRERSHACISDGTEARLMTSSSPKAPEIEIHEMGSNLEVILTSG-VDDQFIFYEVIRILHQDGAEILNAKFSVVGNTIFHVIHAEIRDSMFGFGAAKISERL 594
            K+  +  E+ RR +M +LY++L+SLLP    K + S  DQV+EA+NYIK L+ K+KE   R++ L    R     S   + +           + + +    +E++L+S     Q  F  V+++L + G  +LN+  S+V + + + I AE+ D       A++ +RL
Sbjct:    3 KMMHRETERQRRQEMASLYASLRSLLPLHFIKGKRSTSDQVNEAVNYIKYLQRKIKELSVRRDDLMVLSRGSLLGSSNGDFKEDVEMISGKNHVVVRQCLVGVEIMLSSRCCGGQPRFSSVLQVLSEYGLCLLNSISSIVDDRLVYTIQAEVNDMALMIDLAELEKRL 170
The following BLAST results are available for this feature:
BLAST of DR908134 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
BH036_ARATH2.887e-1429.76Transcription factor bHLH36 OS=Arabidopsis thalian... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_16262 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-40_H02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908134 ID=DR908134; Name=DR908134; organism=Citrus sinensis; type=EST; length=714bp
AAAAATTTGGATCTGAAAATGGGGTATTTGGGACAAAGCTTGGAAGCCAA
AGGATCAATGAAGAGGAAACAGTGTTCTTCTTCTTCACCAACAAAAATAG
AGAGAAAGACCATTGAAAAGAACAGAAGAGATCAAATGAAAAATCTCTAC
TCCACACTCAAATCTCTTCTCCCAAATCAGCCTTCCAAGGAAGAATTGTC
ACTGCCTGATCAAGTAGATGAAGCTATAAATTACATAAAAATGTTAGAGA
CGAAGTTGAAGGAATGCAAGAAGAGGAAGGAAAGTTTACAGGGTAGAGAA
AGATCTCATGCCTGCATCAGTGACGGCACTGAAGCTAGGCTTATGACAAG
TTCATCACCAAAAGCACCAGAAATTGAAATTCATGAAATGGGTTCGAATT
TAGAGGTGATTTTAACTAGTGGGGTTGATGATCAGTTCATATTTTATGAA
GTTATTCGCATTCTCCACCAGGATGGCGCTGAGATTTTAAATGCCAAATT
TTCAGTCGTCGGAAATACTATTTTTCATGTTATTCATGCTGAGATTAGAG
ATTCAATGTTTGGTTTTGGGGCTGCGAAAATAAGTGAGCGGCTAAAAGGA
TTTGTAAGTGGATGCGCCAGTGAAGGAGAGATGCAATTGCCAGAATTATG
GGACTTTGAAATCATCCAGAATTGTGGGAGTTCTAAATTAATAATCCTGT
AATTCATATGAATT
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