DR908114

Overview
NameDR908114
Unique NameDR908114
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length719
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DR908114 vs. ExPASy Swiss-Prot
Match: 5NG4_PINTA (Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.076e-28
Identity = 79/241 (32.78%), Postives = 111/241 (46.06%), Query Frame = 3 
Query:    3 QIFVLALLGPVIDQNFYYAGLKFTSPTFSCAMSNMLPAMTFVMAVICRMEKINMKKVRCQXXXXXXXXXXXXXMIMTLYKGPIVELFWTQHAH---PHXXXXXXXXXXXXXXXWFLGSIFLIIATLAWASLFVLQTKALETYKNHQLSLTSLMCFVGTLQAIAVTFVIEHKPSVWQIGWDMNLLAAAYAGIVTSSISYFVQGLVIKKRGPVFATAFSPLMMIIVAIMGSFILAENIYLGSV 716
            Q F+LAL G           +    PTF+ A+ N +PA+TF+MA   R+EK+++ +                  I+TLYKGP +   W  +      +               W LG I+L+   LAW+   VLQ   L+ Y   +LS+TS  CF G +Q + +    E     W+I     L    YAG V S I++ VQ   I + GPVF   + P+  I VAIM S IL E  YLG +
Sbjct:   84 QFFLLALCGITGQSRILSLRIVLHIPTFASAIQNSVPAITFIMAAALRLEKVHISRRDGLAKIIGTVACVSGATIITLYKGPPITHIWRPNLEVTASYFKAFQGNDLSAKSENWTLGCIYLLGNCLAWSGWIVLQAPVLKRYPA-RLSVTSFTCFFGVIQFLIIAAFFETDLEHWKIHSGGELFTILYAGFVASGIAFSVQIWCIDRGGPVFVAVYQPVQTIAVAIMASIILGEQFYLGGI 323
The following BLAST results are available for this feature:
BLAST of DR908114 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
5NG4_PINTA2.076e-2832.78Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_16242 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-33_G12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908114 ID=DR908114; Name=DR908114; organism=Citrus sinensis; type=EST; length=719bp
TGCAAATATTTGTCCTTGCCCTTCTCGGGCCAGTGATTGATCAGAACTTC
TACTACGCTGGATTGAAATTTACGTCACCAACTTTCTCATGCGCCATGAG
CAACATGCTCCCTGCAATGACCTTTGTCATGGCAGTCATTTGCCGGATGG
AGAAAATAAATATGAAGAAAGTAAGGTGTCAAGCAAAAGTAGTGGGAACA
GCGGTGACAGTAGCAGGAGCCATGATAATGACCTTATATAAGGGACCGAT
TGTTGAATTGTTTTGGACCCAACATGCGCATCCTCATGATAAATCCGATG
CGACTACTTCCACTGCATCATCTGACAAAGATTGGTTCCTTGGCTCCATT
TTCCTTATAATAGCCACTCTTGCTTGGGCTTCTTTGTTTGTTTTACAAAC
CAAGGCATTGGAGACATACAAGAATCATCAGCTCTCACTCACATCACTAA
TGTGCTTTGTGGGGACTCTACAAGCAATTGCTGTCACATTTGTAATTGAG
CACAAGCCCTCTGTGTGGCAAATTGGCTGGGATATGAACCTTCTTGCTGC
AGCTTATGCTGGAATTGTAACATCAAGTATCTCATACTTTGTACAAGGAC
TGGTGATAAAGAAAAGGGGTCCAGTTTTTGCAACTGCTTTCAGTCCCTTG
ATGATGATAATTGTAGCCATCATGGGCTCTTTCATTCTTGCTGAGAACAT
TTATCTTGGAAGTGTGCTT
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