EY720374

Overview
NameEY720374
Unique NameEY720374
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length448
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7325 contig Csv1_Contig7325:260..710. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY720374 vs. ExPASy Swiss-Prot
Match: CHLP_TOBAC (Geranylgeranyl diphosphate reductase, chloroplastic OS=Nicotiana tabacum GN=CHLP PE=2 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 4.894e-65
Identity = 122/148 (82.43%), Postives = 132/148 (89.19%), Query Frame = 1
Query:    7 TRPQNGVETFLIERKLDNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMK-ISPSNVAVDIGQTLKPHEYIGMVRREVLDAYLRERAEKNGASVINGLFMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGADGANSRVAK 447
            T  + G+ETFLIERK+DNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMK ISPSNVAVDIGQTLKPHEYIGMVRREVLDAYLR+RA + GASV+NGLF+KMD+P+    PYVL+YT YD    G GEKRTLEVDAVIGADGANSRVAK
Sbjct:   70 TLAKGGIETFLIERKMDNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGQTLKPHEYIGMVRREVLDAYLRDRAAEAGASVLNGLFLKMDMPKAPNAPYVLHYTAYDSKTNGAGEKRTLEVDAVIGADGANSRVAK 217          
BLAST of EY720374 vs. ExPASy Swiss-Prot
Match: CHLP_ARATH (Geranylgeranyl diphosphate reductase, chloroplastic OS=Arabidopsis thaliana GN=CHLP PE=1 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 8.347e-65
Identity = 119/148 (80.41%), Postives = 133/148 (89.86%), Query Frame = 1
Query:    7 TRPQNGVETFLIERKLDNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMK-ISPSNVAVDIGQTLKPHEYIGMVRREVLDAYLRERAEKNGASVINGLFMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGADGANSRVAK 447
            T  Q G+ET LIERK+DNCKPCGGAIPLCMVGEF+LPLDIIDR+VTKMK ISPSN+AVDIG+TLK HEYIGMVRREVLDAYLRERAEK+GA+VINGLF+KMD P N++ PY L+YTEYDG  G  G K+T+EVDAVIGADGANSRVAK
Sbjct:   73 TLAQGGIETILIERKMDNCKPCGGAIPLCMVGEFNLPLDIIDRRVTKMKMISPSNIAVDIGRTLKEHEYIGMVRREVLDAYLRERAEKSGATVINGLFLKMDHPENWDSPYTLHYTEYDGKTGATGTKKTMEVDAVIGADGANSRVAK 220          
BLAST of EY720374 vs. ExPASy Swiss-Prot
Match: CHLP_ORYSJ (Geranylgeranyl diphosphate reductase, chloroplastic OS=Oryza sativa subsp. japonica GN=CHLP PE=2 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 2.061e-55
Identity = 107/146 (73.29%), Postives = 120/146 (82.19%), Query Frame = 1
Query:   16 QNGVETFLIERKLDNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMK-ISPSNVAVDIGQTLKPHEYIGMVRREVLDAYLRERAEKNGASVINGLFMKMDLPRNFEQPYVLYYTEYDGTKGGV-GEKRTLEVDAVIGADGANSRVAK 447
            + GVET LIERKLDNCKPCGGAIPLCMV EFDLPLD++DRKV KMK ISPSNVAVDIG TL PHEYIGMVRREVLDAYLR RAE  GA V+NGLF++ + P+     YV++Y  YD + G   GEKRT EVDA++GADGANSRVAK
Sbjct:   71 KGGVETVLIERKLDNCKPCGGAIPLCMVSEFDLPLDLVDRKVRKMKMISPSNVAVDIGGTLAPHEYIGMVRREVLDAYLRSRAEGAGAEVVNGLFLRYEAPKEPNGSYVVHYNHYDSSNGKAGGEKRTFEVDAIVGADGANSRVAK 216          
BLAST of EY720374 vs. ExPASy Swiss-Prot
Match: CHLP_SYNY3 (Geranylgeranyl diphosphate reductase OS=Synechocystis sp. (strain PCC 6803) GN=chlP PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 1.582e-47
Identity = 95/143 (66.43%), Postives = 110/143 (76.92%), Query Frame = 1
Query:   22 GVETFLIERKLDNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMK-ISPSNVAVDIGQTLKPHEYIGMVRREVLDAYLRERAEKNGASVINGLFMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGADGANSRVAK 447
            G+ET+L ERKLDN KPCGGAIPLCMV EFDLP +IIDR+V KMK ISPSN+ V+IGQTLK  EYIGM RREVLD +LRERAEK G  VING   K+D+P     PY L+Y ++    G  GE + L+VD VIGADGANSR+AK
Sbjct:   25 GIETYLFERKLDNAKPCGGAIPLCMVDEFDLPPEIIDRRVRKMKMISPSNIEVNIGQTLKDDEYIGMCRREVLDGFLRERAEKLGTKVINGTVYKLDIPSKDSDPYTLHYADH-SVGGTTGEMKILKVDVVIGADGANSRIAK 166          
BLAST of EY720374 vs. ExPASy Swiss-Prot
Match: BCHP_RHOCA (Geranylgeranyl diphosphate reductase OS=Rhodobacter capsulatus GN=bchP PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.932e-14
Identity = 54/143 (37.76%), Postives = 83/143 (58.04%), Query Frame = 1
Query:   22 GVETFLIERKLDNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMK-ISPSNVAVDIGQTLKPHE--YIGMVRREVLDAYLRERAEKNGASVINGLFMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGADGANSRV 441
            G++  L++R     KPCGGAIP  ++ +FD+P  ++  K+T  + ISP+   VDI     P E  ++GMV RE  D +LRERA K GA  + G +++++  R+  +  V++  +        GE+   E   VIGADGANS+V
Sbjct:   25 GLKVALLDRA-GRIKPCGGAIPPRLIRDFDIPDHLLVAKITSARMISPTGRFVDI-----PIENGFVGMVDREDYDEWLRERAGKAGAERLTGTWLRIE--RDSGKTVVVWRDKV------TGEEMKAETRVVIGADGANSQV 153          
The following BLAST results are available for this feature:
BLAST of EY720374 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
CHLP_TOBAC4.894e-6582.43Geranylgeranyl diphosphate reductase, chloroplasti... [more]
CHLP_ARATH8.347e-6580.41Geranylgeranyl diphosphate reductase, chloroplasti... [more]
CHLP_ORYSJ2.061e-5573.29Geranylgeranyl diphosphate reductase, chloroplasti... [more]
CHLP_SYNY31.582e-4766.43Geranylgeranyl diphosphate reductase OS=Synechocys... [more]
BCHP_RHOCA3.932e-1437.76Geranylgeranyl diphosphate reductase OS=Rhodobacte... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-703-008-E11-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY720374 ID=EY720374; Name=EY720374; organism=Citrus sinensis; type=EST; length=448bp
CCACCCACGCGTCCGCAAAATGGCGTCGAAACGTTCCTGATCGAGCGTAA
GCTCGACAACTGCAAGCCCTGCGGCGGGGCCATCCCTCTCTGCATGGTGG
GGGAGTTTGACCTGCCGCTGGACATAATCGACCGGAAGGTGACGAAGATG
AAGATATCGCCGTCGAACGTGGCGGTGGACATCGGGCAGACGCTGAAGCC
GCACGAGTATATCGGGATGGTGAGGCGGGAGGTTCTGGACGCGTATTTGA
GGGAGAGGGCGGAGAAGAACGGGGCGAGCGTGATTAACGGGTTATTCATG
AAGATGGATTTGCCGAGGAACTTTGAGCAGCCGTACGTTTTGTATTATAC
GGAGTACGATGGGACAAAGGGCGGCGTCGGTGAGAAGAGGACGCTGGAGG
TTGATGCTGTTATCGGAGCTGATGGTGCTAACTCCAGAGTTGCCAAGT
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