EY649974

Overview
NameEY649974
Unique NameEY649974
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length757
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7256 contig Csv1_Contig7256:21..780. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of EY649974 vs. ExPASy Swiss-Prot
Match: COX12_SCHPO (Cytochrome c oxidase subunit 6B OS=Schizosaccharomyces pombe GN=cox12 PE=2 SV=2)

HSP 1 Score: 56.225 bits (134), Expect = 3.337e-12
Identity = 25/52 (48.08%), Postives = 29/52 (55.77%), Query Frame = 1 
Query:  334 DQEASEETPDIKLETAPADFRFPTTNQTRHCFTRYIEYHRCVAAKGEGAPEC 489
            +QE  E        T   D RFP TNQT+HCF  YI+Y RC+ AKGE    C
Sbjct:    3 EQEDQEAPKQFTFGTVGFDARFPNTNQTKHCFQSYIDYFRCIKAKGEDFVPC 54

HSP 2 Score: 32.3426 bits (72), Expect = 3.337e-12
Identity = 11/15 (73.33%), Postives = 13/15 (86.67%), Query Frame = 2 
Query:  539 KWDEXRENGTFPGPL 583
            +WDE RENGTFP P+
Sbjct:   72 RWDEQRENGTFPAPI 86

HSP 3 Score: 23.483 bits (49), Expect = 3.337e-12
Identity = 6/11 (54.55%), Postives = 10/11 (90.91%), Query Frame = 3 
Query:  507 YRALCPSDWIE 539
            Y++LCP +W+E
Sbjct:   61 YQSLCPMEWVE 71
The following BLAST results are available for this feature:
BLAST of EY649974 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
COX12_SCHPO3.337e-1248.08Cytochrome c oxidase subunit 6B OS=Schizosaccharom... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-100-005-F12-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY649974 ID=EY649974; Name=EY649974; organism=Citrus sinensis; type=EST; length=757bp
TGCCCATCAATGGCGGAAGCCCAAAGCGACAAAACTCCCTCCCTAGCCGA
GGATTATTTGTTGGAAAAAGAGAAGCAAGATGTAGCTACAAAACCTGTGG
AAGTAAAAGAAGTTGAGAGTGCAGTGACTGCCTCTTCTGTGGAAGGTGCC
ACTGATAAAGTTGAAGAAACACCTGCTGCCGCCGCTGTTGAAGAAAGCAA
AGAAGACGCCCCTGCTCCTGCCCCTGAAGAAAGCACTGAAGCCAGTTCTG
CTTCTCCTGAGGACAGCACTAGTGATACGGCTCCAGCTGCTGCTGAGGAA
AGCAGTGAAACTACGGAAGAGGAAAACTCAGGTGATCAGGAAGCCTCAGA
AGAGACACCAGATATAAAGCTGGAGACTGCACCGGCAGATTTCCGTTTCC
CAACCACAAATCAAACAAGGCACTGCTTTACCCGATATATTGAGTATCAT
CGGTGTGTAGCTGCTAAGGGAGAGGGTGCTCCAGAGTGTGANTAAATTGC
AAATATTACCGTGCTCTATGCCCTAGTGACTGGATAGAAAATGGGATGAG
CNAAGAGAAAACGGAACCTTTCCAGGTCCTCTGTAGGTGGTGCCATTTTT
ACGACATGGGGTGTGATTCGCATCCTGCGGGTAAATTAAAGNTGCTACTC
AAAATCAAAGGAGTAATTTCTTGACTGAGAAGTGATTTCTCAGGGATCTT
TTNCTAAATCAATGAGTTAATAATNNTTTTGACTTGCTAAAAAAAAAAAA
AAAAAAA
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