DR405610

Overview
NameDR405610
Unique NameDR405610
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length657
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig121 contig Csv1_Contig121:1..634. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR405610 vs. ExPASy Swiss-Prot
Match: FRI3_SOYBN (Ferritin-3, chloroplastic OS=Glycine max PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.106e-41
Identity = 88/145 (60.69%), Postives = 98/145 (67.59%), Query Frame = 1
Query:  223 RSLKVSAAVDANSMPLTGVVFQPFKEVKKEXXXXXXXXXXXXARQKYEDECEAAINEQINVEYNVSYVYHALNAYFDRDNIALRGLXXXXXXXXXXXXXXXXXXMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALXXMELALSL 657
            ++L   A  D N+ PLTGVVF+PF+EVKKE            ARQKY D+CEA INEQINVEYNVSYVYHA+ AYFDRDN+AL+GL                  MEYQN RGGKVKL SI+ P SEFDH EKGDAL  MELALSL
Sbjct:   39 KNLVPCATKDTNNRPLTGVVFEPFEEVKKELDLVPTVPQASLARQKYTDDCEATINEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSIVMPLSEFDHEEKGDALYAMELALSL 183          
BLAST of DR405610 vs. ExPASy Swiss-Prot
Match: FRI2_TOBAC (Ferritin-2, chloroplastic OS=Nicotiana tabacum GN=FER2 PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 4.056e-41
Identity = 92/171 (53.80%), Postives = 107/171 (62.57%), Query Frame = 1
Query:  145 LTTGSSCYSKSNASLVKLGGILPRTKRSLKVSAAVDANSMPLTGVVFQPFKEVKKEXXXXXXXXXXXXARQKYEDECEAAINEQINVEYNVSYVYHALNAYFDRDNIALRGLXXXXXXXXXXXXXXXXXXMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALXXMELALSL 657
            L+T S  +   N S     G+L        V A+  +N+ PLTGVVF+PF+EVKKE            AR KY D+CEAA+NEQINVEYNVSYVYH + AYFDRDN+AL+GL                  MEYQN RGGKVKL SI+ P SEFDHAE+GDAL  MELALSL
Sbjct:   23 LSTSSQGFVLKNFSTKSRNGLLV-------VCASKGSNTKPLTGVVFEPFEEVKKELMLVPTVPQVSLARHKYSDQCEAAVNEQINVEYNVSYVYHGMYAYFDRDNVALKGLARFFKESSEEERGHAEKLMEYQNKRGGKVKLQSILMPLSEFDHAEEGDALYAMELALSL 186          
BLAST of DR405610 vs. ExPASy Swiss-Prot
Match: FRI1_ARATH (Ferritin-1, chloroplastic OS=Arabidopsis thaliana GN=FER1 PE=1 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 7.650e-40
Identity = 93/172 (54.07%), Postives = 111/172 (64.53%), Query Frame = 1
Query:  145 LTTGSSCYSKSNASLVKLGGILPRTKRSLKVSAA-VDANSMPLTGVVFQPFKEVKKEXXXXXXXXXXXXARQKYEDECEAAINEQINVEYNVSYVYHALNAYFDRDNIALRGLXXXXXXXXXXXXXXXXXXMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALXXMELALSL 657
            L  GS+  S S     K+GG      R++ V+AA VD N+MP+TGVVFQPF+EVKK             ARQ++ D  EA INEQINVEYNVSYVYH++ AYFDRDN+A++GL                  MEYQN RGG+VKLH I+ P SEF+HAEKGDAL  MELALSL
Sbjct:   22 LPHGSASPSVSLGFSRKVGG-----GRAVVVAAATVDTNNMPMTGVVFQPFEEVKKADLAIPITSHASLARQRFADASEAVINEQINVEYNVSYVYHSMYAYFDRDNVAMKGLAKFFKESSEEERGHAEKFMEYQNQRGGRVKLHPIVSPISEFEHAEKGDALYAMELALSL 188          
BLAST of DR405610 vs. ExPASy Swiss-Prot
Match: FRI4_ARATH (Ferritin-4, chloroplastic OS=Arabidopsis thaliana GN=FER4 PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 9.991e-40
Identity = 96/185 (51.89%), Postives = 109/185 (58.92%), Query Frame = 1
Query:  160 SCYSKSNASLVKLGGI-------LPRTKRSLKVSAAVDAN------------SMPLTGVVFQPFKEVKKEXXXXXXXXXXXXARQKYEDECEAAINEQINVEYNVSYVYHALNAYFDRDNIALRGLXXXXXXXXXXXXXXXXXXMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALXXMELALSL 657
            S  S S  SLV   G+       LP    +L+VS+    N            +  L+GVVF+PFKEVKKE            ARQKY DECEAAINEQINVEYNVSYVYHA+ AYFDRDNIAL+GL                  MEYQN RGG+VKL SI+ P SEF+H +KGDAL  MELALSL
Sbjct:    7 SSSSSSALSLVNFHGVKKDVSPLLPSISSNLRVSSGKSGNLTFSFRASKSSTTDALSGVVFEPFKEVKKELDLVPTSSHLSLARQKYSDECEAAINEQINVEYNVSYVYHAMYAYFDRDNIALKGLAKFFKESSLEEREHAEKLMEYQNKRGGRVKLQSIVMPLSEFEHVDKGDALYGMELALSL 191          
BLAST of DR405610 vs. ExPASy Swiss-Prot
Match: FRI3_VIGUN (Ferritin-3, chloroplastic OS=Vigna unguiculata PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.305e-39
Identity = 88/167 (52.69%), Postives = 106/167 (63.47%), Query Frame = 1
Query:  157 SSCYSKSNASLVKLGGILPRTKRSLKVSAAVDANSMPLTGVVFQPFKEVKKEXXXXXXXXXXXXARQKYEDECEAAINEQINVEYNVSYVYHALNAYFDRDNIALRGLXXXXXXXXXXXXXXXXXXMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALXXMELALSL 657
            S C S S ++ V  GG      R+++V AA      PLTGV+F+PF+E+KK+            +RQ Y DE EAAINEQINVEYNVSYVYH+L AYFDRDNIAL+GL                  ++YQN+RGG+V LH I  PPSEF+H EKGDAL  MELALSL
Sbjct:   27 SLCSSSSLSASVNGGG-----SRNMRVCAAASNAPAPLTGVIFEPFQELKKDYLAVPIAPNVSLSRQNYSDEAEAAINEQINVEYNVSYVYHSLFAYFDRDNIALKGLAKFFKESSEEEREHAEKLIKYQNIRGGRVVLHPITSPPSEFEHPEKGDALYAMELALSL 188          
BLAST of DR405610 vs. ExPASy Swiss-Prot
Match: FRI1_BRANA (Ferritin-1, chloroplastic OS=Brassica napus GN=LSC30 PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.704e-39
Identity = 83/140 (59.29%), Postives = 96/140 (68.57%), Query Frame = 1
Query:  238 SAAVDANSMPLTGVVFQPFKEVKKEXXXXXXXXXXXXARQKYEDECEAAINEQINVEYNVSYVYHALNAYFDRDNIALRGLXXXXXXXXXXXXXXXXXXMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALXXMELALSL 657
            S+ VD N+MP+TGVVFQPF+EVKK             ARQ+Y D  EAAINEQINVEYNVSYVYH++ AYFDRDN+AL+GL                  MEYQN RGG+V LH I+ P S+F+HAEKGDAL  MELALSL
Sbjct:   48 SSTVDTNNMPMTGVVFQPFEEVKKADLAIPITSNASLARQRYADSSEAAINEQINVEYNVSYVYHSMYAYFDRDNVALKGLAKFFKESSDEEREHAEKFMEYQNQRGGRVTLHPIVSPISDFEHAEKGDALYAMELALSL 187          
BLAST of DR405610 vs. ExPASy Swiss-Prot
Match: FRI2_VIGUN (Ferritin-2, chloroplastic OS=Vigna unguiculata GN=PFE2 PE=2 SV=2)

HSP 1 Score: 161.77 bits (408), Expect = 2.907e-39
Identity = 90/152 (59.21%), Postives = 99/152 (65.13%), Query Frame = 1
Query:  205 ILPRTKRSLKVSAAVDA-NSMPLTGVVFQPFKEVKKEXXXXXXXXXXXXARQKYEDECEAAINEQINVEYNVSYVYHALNAYFDRDNIALRGLXXXXXXXXXXXXXXXXXXMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALXXMELALSL 657
            +L      L V AA  + N   LTGV+F+PF+EVKKE            ARQKY DE EAA+NEQINVEYNVSYVYHAL AYFDRDN+ALRGL                  MEYQN RGGKVKL SI+ P SEFDHA+KGDAL  MELALSL
Sbjct:   26 VLANNASRLVVRAAKGSTNHRALTGVIFEPFEEVKKELDLVPTVPQASLARQKYVDESEAAVNEQINVEYNVSYVYHALFAYFDRDNVALRGLAKFFKESSEEEREHAEKLMEYQNRRGGKVKLQSIVMPLSEFDHADKGDALHAMELALSL 177          
BLAST of DR405610 vs. ExPASy Swiss-Prot
Match: FRI1_TOBAC (Ferritin-1, chloroplastic OS=Nicotiana tabacum GN=FER1 PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 3.796e-39
Identity = 84/149 (56.38%), Postives = 96/149 (64.43%), Query Frame = 1
Query:  211 PRTKRSLKVSAAVDANSMPLTGVVFQPFKEVKKEXXXXXXXXXXXXARQKYEDECEAAINEQINVEYNVSYVYHALNAYFDRDNIALRGLXXXXXXXXXXXXXXXXXXMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALXXMELALSL 657
            P+      VSA+   N  PLTGVVF+PF+E+KKE             RQKY D+CEAAINEQINVEYN SYVYHA+ AYFDRDN+AL+GL                  ME+QN RGG+VKL SI  PP+EFDH EKGDAL  MELAL L
Sbjct:   31 PKNGNRFVVSASKATNHKPLTGVVFEPFEELKKELMLVPAVPDTSLCRQKYSDDCEAAINEQINVEYNNSYVYHAMFAYFDRDNVALKGLAKFFKESSLEEREHAEKLMEFQNKRGGRVKLLSICAPPTEFDHCEKGDALYAMELALCL 179          
BLAST of DR405610 vs. ExPASy Swiss-Prot
Match: FRI4_SOYBN (Ferritin-4, chloroplastic OS=Glycine max PE=1 SV=2)

HSP 1 Score: 160.999 bits (406), Expect = 4.958e-39
Identity = 93/166 (56.02%), Postives = 106/166 (63.86%), Query Frame = 1
Query:  169 SKSNASLVKLGGILPRT--KRSLKVSAAVDA-NSMPLTGVVFQPFKEVKKEXXXXXXXXXXXXARQKYEDECEAAINEQINVEYNVSYVYHALNAYFDRDNIALRGLXXXXXXXXXXXXXXXXXXMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALXXMELALSL 657
            S S+ SL       PR+   R L V AA  + N   LTGV+F+PF+EVKKE            ARQKY DE E+A+NEQINVEYNVSYVYHA+ AYFDRDN+ALRGL                  MEYQN RGGKVKL SI+ P S+FDHA+KGDAL  MELALSL
Sbjct:    9 SASSLSLFSPNAEPPRSVPARGLVVRAAKGSTNHRALTGVIFEPFEEVKKELDLVPTVPQASLARQKYVDESESAVNEQINVEYNVSYVYHAMFAYFDRDNVALRGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSIVMPLSDFDHADKGDALHAMELALSL 174          
BLAST of DR405610 vs. ExPASy Swiss-Prot
Match: FRI_PHAVU (Ferritin, chloroplastic OS=Phaseolus vulgaris GN=PFE PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.595e-37
Identity = 79/137 (57.66%), Postives = 92/137 (67.15%), Query Frame = 1
Query:  247 VDANSMPLTGVVFQPFKEVKKEXXXXXXXXXXXXARQKYEDECEAAINEQINVEYNVSYVYHALNAYFDRDNIALRGLXXXXXXXXXXXXXXXXXXMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALXXMELALSL 657
            V A+++PLTGV+F+PF+EVKKE            ARQ Y DECE+AINEQINVEYN SYVYH+L AYFDRDN+AL+G                   M+YQN RGG+V LH I   PSEF+H EKGDAL  MELALSL
Sbjct:   46 VSASTVPLTGVIFEPFEEVKKEELAVPTAGQVSLARQYYADECESAINEQINVEYNASYVYHSLFAYFDRDNVALKGFARFFKESSEEEREHAEKLMKYQNTRGGRVVLHPIKNVPSEFEHVEKGDALYAMELALSL 182          
The following BLAST results are available for this feature:
BLAST of DR405610 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
FRI3_SOYBN3.106e-4160.69Ferritin-3, chloroplastic OS=Glycine max PE=2 SV=1[more]
FRI2_TOBAC4.056e-4153.80Ferritin-2, chloroplastic OS=Nicotiana tabacum GN=... [more]
FRI1_ARATH7.650e-4054.07Ferritin-1, chloroplastic OS=Arabidopsis thaliana ... [more]
FRI4_ARATH9.991e-4051.89Ferritin-4, chloroplastic OS=Arabidopsis thaliana ... [more]
FRI3_VIGUN1.305e-3952.69Ferritin-3, chloroplastic OS=Vigna unguiculata PE=... [more]
FRI1_BRANA1.704e-3959.29Ferritin-1, chloroplastic OS=Brassica napus GN=LSC... [more]
FRI2_VIGUN2.907e-3959.21Ferritin-2, chloroplastic OS=Vigna unguiculata GN=... [more]
FRI1_TOBAC3.796e-3956.38Ferritin-1, chloroplastic OS=Nicotiana tabacum GN=... [more]
FRI4_SOYBN4.958e-3956.02Ferritin-4, chloroplastic OS=Glycine max PE=1 SV=2[more]
FRI_PHAVU1.595e-3757.66Ferritin, chloroplastic OS=Phaseolus vulgaris GN=P... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCSAD-PNP1242P20 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone CSAD-PNP1242P20 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405610 ID=DR405610; Name=DR405610; organism=Citrus sinensis; type=EST; length=657bp
GGGGATCATCAGATCAGTCGGCTGCCATTCTTCTTCATCAAATTCATTTG
CTTTCTTCCTTCAATCTCCATTACGCACTTGCTTACAGCAATGGCATTGG
CAGCTTCTTCATCCTCCTCTCTTGCAGCGAAGCAACTGGCTGGTCTTACA
ACAGGCTCATCATGTTACTCTAAGTCTAATGCTTCTCTTGTGAAATTGGG
TGGTATTTTGCCAAGAACGAAGAGGAGTCTGAAGGTTTCTGCTGCTGTGG
ACGCCAATAGCATGCCGCTGACCGGGGTCGTGTTTCAGCCATTCAAAGAG
GTCAAGAAAGAGGTTCTTGATGTTCCTGTTTCCCCTCTGCTTTCACTAGC
TCGCCAAAAGTACGAGGACGAGTGTGAGGCCGCTATCAACGAGCAGATCA
ATGTGGAATATAATGTCTCATACGTGTACCATGCCCTGAATGCGTACTTT
GATCGGGATAATATTGCTCTGAGAGGCCTTGCCAAATTTTTCAAGGAGTC
CAGTGAAGAAGAAAGGGAACATGCTGAGAAGTTTATGGAGTATCAGAACT
TGCGCGGTGGAAAAGTAAAACTGCACTCCATAATGCAGCCCCCTTCGGAG
TTTGATCATGCAGAGAAAGGGGATGCCTTGTANNNAATGGAACTAGCATT
GTCCCTG
back to top