DR405606

Overview
NameDR405606
Unique NameDR405606
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length469
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6285 contig Csv1_Contig6285:1..469. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DR405606 vs. ExPASy Swiss-Prot
Match: U631_ARATH (UPF0631 protein At3g19508 OS=Arabidopsis thaliana GN=At3g19508 PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 2.021e-27
Identity = 57/80 (71.25%), Postives = 67/80 (83.75%), Query Frame = 3 
Query:   18 MDKALRAYATVLRLIRRLPKDTRPYYAKYARENFVNYREVDANDASSLDELFHRAYNHSIWVLNKYKVEESAADKLKDIC 257
            M K LR Y  V+RL+R LP D+RPYYAKYARENFVNYREVD ++ +SLDELF RAYNHS+WVL KY ++ESAA KLK+IC
Sbjct:    1 MKKVLRVYGGVMRLVRLLPADSRPYYAKYARENFVNYREVDQSE-TSLDELFQRAYNHSLWVLKKYSIDESAATKLKEIC 79
The following BLAST results are available for this feature:
BLAST of DR405606 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
U631_ARATH2.021e-2771.25UPF0631 protein At3g19508 OS=Arabidopsis thaliana ... [more]
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Properties
Property NameValue
Genbank descriptionCSAD-PNP1242P16 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone CSAD-PNP1242P16 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405606 ID=DR405606; Name=DR405606; organism=Citrus sinensis; type=EST; length=469bp
GGGGATTGGAACAGAAAATGGACAAAGCGTTGCGAGCGTACGCTACCGTT
CTGAGGCTGATTCGGCGTTTGCCAAAAGACACGAGACCTTATTATGCCAA
ATACGCCCGCGAAAACTTCGTCAACTATAGAGAAGTTGACGCCAACGATG
CCAGCTCCCTCGATGAGCTCTTCCACAGAGCTTATAATCACTCCATCTGG
GTCCTCAACAAGTATAAGGTAGAAGAATCAGCCGCTGATAAGTTGAAGGA
TATATGTTGCGGTTAAAGCATGCCTACAAGATGTTTGTTCTAATGGCTAA
ATGAGTAGTGACGTTCTTGATTTTGCCTTCTTCCTTTGCTAAACGTGATA
TTTTATAGATTTTGGGTTTGATAGCTTGCGTAATGCTTAAGAATAAATTG
AGAATTTGGTAATGCAGTAAATCGAGTGCAGTTTCCTGCACAAAAAAAAA
AAAAAAAAAAAAAAAAAAA
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