DR405605

Overview
NameDR405605
Unique NameDR405605
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length422
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6283 contig Csv1_Contig6283:172..594. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of DR405605 vs. ExPASy Swiss-Prot
Match: PSBK_CITSI (Photosystem II reaction center protein K OS=Citrus sinensis GN=psbK PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 2.078e-23
Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = 1
Query:  181 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAF 276
            MLNIFSLMYICLNSALYSSSFLFAKLPEAYAF
Sbjct:    1 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAF 32          

HSP 2 Score: 63.5438 bits (153), Expect = 2.078e-23
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 3
Query:  273 FLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 362
            FLNPIVDVMPVIPVLFFLLAFVWQAAVSFR
Sbjct:   32 FLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 61          
BLAST of DR405605 vs. ExPASy Swiss-Prot
Match: PSBK_GOSHI (Photosystem II reaction center protein K OS=Gossypium hirsutum GN=psbK PE=3 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 4.307e-20
Identity = 29/30 (96.67%), Postives = 29/30 (96.67%), Query Frame = 3
Query:  273 FLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 362
            FLNPIVD MPVIPVLFFLLAFVWQAAVSFR
Sbjct:   32 FLNPIVDFMPVIPVLFFLLAFVWQAAVSFR 61          

HSP 2 Score: 57.3806 bits (137), Expect = 4.307e-20
Identity = 27/32 (84.38%), Postives = 30/32 (93.75%), Query Frame = 1
Query:  181 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAF 276
            MLNIF+L+ IC NSAL+SSSFLFAKLPEAYAF
Sbjct:    1 MLNIFNLICICFNSALFSSSFLFAKLPEAYAF 32          
BLAST of DR405605 vs. ExPASy Swiss-Prot
Match: PSBK_GOSBA (Photosystem II reaction center protein K OS=Gossypium barbadense GN=psbK PE=3 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 4.307e-20
Identity = 29/30 (96.67%), Postives = 29/30 (96.67%), Query Frame = 3
Query:  273 FLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 362
            FLNPIVD MPVIPVLFFLLAFVWQAAVSFR
Sbjct:   32 FLNPIVDFMPVIPVLFFLLAFVWQAAVSFR 61          

HSP 2 Score: 57.3806 bits (137), Expect = 4.307e-20
Identity = 27/32 (84.38%), Postives = 30/32 (93.75%), Query Frame = 1
Query:  181 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAF 276
            MLNIF+L+ IC NSAL+SSSFLFAKLPEAYAF
Sbjct:    1 MLNIFNLICICFNSALFSSSFLFAKLPEAYAF 32          
BLAST of DR405605 vs. ExPASy Swiss-Prot
Match: PSBK_PANGI (Photosystem II reaction center protein K OS=Panax ginseng GN=psbK PE=3 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 1.234e-19
Identity = 27/30 (90.00%), Postives = 29/30 (96.67%), Query Frame = 3
Query:  273 FLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 362
            FLNPIVD+MPVIP+ FFLLAFVWQAAVSFR
Sbjct:   32 FLNPIVDLMPVIPLFFFLLAFVWQAAVSFR 61          

HSP 2 Score: 57.7658 bits (138), Expect = 1.234e-19
Identity = 28/32 (87.50%), Postives = 29/32 (90.62%), Query Frame = 1
Query:  181 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAF 276
            MLNIFSL+ ICLNSALYSSS  FAKLPEAYAF
Sbjct:    1 MLNIFSLICICLNSALYSSSLFFAKLPEAYAF 32          
BLAST of DR405605 vs. ExPASy Swiss-Prot
Match: PSBK_DAUCA (Photosystem II reaction center protein K OS=Daucus carota GN=psbK PE=3 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 3.534e-19
Identity = 27/30 (90.00%), Postives = 29/30 (96.67%), Query Frame = 3
Query:  273 FLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 362
            FLNPIVD+MPVIP+ FFLLAFVWQAAVSFR
Sbjct:   32 FLNPIVDLMPVIPLFFFLLAFVWQAAVSFR 61          

HSP 2 Score: 56.225 bits (134), Expect = 3.534e-19
Identity = 27/32 (84.38%), Postives = 28/32 (87.50%), Query Frame = 1
Query:  181 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAF 276
            MLNIFSL+ ICLNSA YSSS  FAKLPEAYAF
Sbjct:    1 MLNIFSLICICLNSAFYSSSLFFAKLPEAYAF 32          
BLAST of DR405605 vs. ExPASy Swiss-Prot
Match: PSBK_LACSA (Photosystem II reaction center protein K OS=Lactuca sativa GN=psbK PE=3 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 4.900e-18
Identity = 28/30 (93.33%), Postives = 29/30 (96.67%), Query Frame = 3
Query:  273 FLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 362
            FLNPIVDVMPVIP+ FFLLAFVWQAAVSFR
Sbjct:   30 FLNPIVDVMPVIPLFFFLLAFVWQAAVSFR 59          

HSP 2 Score: 51.2174 bits (121), Expect = 4.900e-18
Identity = 27/32 (84.38%), Postives = 27/32 (84.38%), Query Frame = 1
Query:  181 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAF 276
            MLNIFSL  ICLNSALY SS  FAKLPEAYAF
Sbjct:    1 MLNIFSL--ICLNSALYPSSLFFAKLPEAYAF 30          
BLAST of DR405605 vs. ExPASy Swiss-Prot
Match: PSBK_HELAN (Photosystem II reaction center protein K OS=Helianthus annuus GN=psbK PE=3 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 4.900e-18
Identity = 28/30 (93.33%), Postives = 29/30 (96.67%), Query Frame = 3
Query:  273 FLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 362
            FLNPIVDVMPVIP+ FFLLAFVWQAAVSFR
Sbjct:   30 FLNPIVDVMPVIPLFFFLLAFVWQAAVSFR 59          

HSP 2 Score: 51.2174 bits (121), Expect = 4.900e-18
Identity = 27/32 (84.38%), Postives = 27/32 (84.38%), Query Frame = 1
Query:  181 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAF 276
            MLNIFSL  ICLNSALY SS  FAKLPEAYAF
Sbjct:    1 MLNIFSL--ICLNSALYPSSLFFAKLPEAYAF 30          
BLAST of DR405605 vs. ExPASy Swiss-Prot
Match: PSBK_SILLA (Photosystem II reaction center protein K OS=Silene latifolia GN=psbK PE=3 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 2.521e-16
Identity = 27/30 (90.00%), Postives = 29/30 (96.67%), Query Frame = 3
Query:  273 FLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 362
            FL+PIVD MPVIP+LFFLLAFVWQAAVSFR
Sbjct:   30 FLSPIVDFMPVIPLLFFLLAFVWQAAVSFR 59          

HSP 2 Score: 47.7506 bits (112), Expect = 2.521e-16
Identity = 27/32 (84.38%), Postives = 27/32 (84.38%), Query Frame = 1
Query:  181 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAF 276
            MLNIFSL  I LNSALYSSS  FAKLPEAYAF
Sbjct:    1 MLNIFSL--IGLNSALYSSSCFFAKLPEAYAF 30          
BLAST of DR405605 vs. ExPASy Swiss-Prot
Match: PSBK_MORIN (Photosystem II reaction center protein K OS=Morus indica GN=psbK PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.325e-11
Identity = 32/41 (78.05%), Postives = 34/41 (82.93%), Query Frame = 3
Query:  240 FFIR*ITRGLRFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 362
            FF+  +     FLNPIVDVMPVIPVLFFLLAFVWQAAVSFR
Sbjct:   21 FFVAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 61          
The following BLAST results are available for this feature:
BLAST of DR405605 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
PSBK_CITSI2.078e-23100.00Photosystem II reaction center protein K OS=Citrus... [more]
PSBK_GOSHI4.307e-2096.67Photosystem II reaction center protein K OS=Gossyp... [more]
PSBK_GOSBA4.307e-2096.67Photosystem II reaction center protein K OS=Gossyp... [more]
PSBK_PANGI1.234e-1990.00Photosystem II reaction center protein K OS=Panax ... [more]
PSBK_DAUCA3.534e-1990.00Photosystem II reaction center protein K OS=Daucus... [more]
PSBK_LACSA4.900e-1893.33Photosystem II reaction center protein K OS=Lactuc... [more]
PSBK_HELAN4.900e-1893.33Photosystem II reaction center protein K OS=Helian... [more]
PSBK_SILLA2.521e-1690.00Photosystem II reaction center protein K OS=Silene... [more]
PSBK_MORIN3.325e-1178.05Photosystem II reaction center protein K OS=Morus ... [more]
back to top
Properties
Property NameValue
Genbank descriptionCSAD-PNP1242P15 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone CSAD-PNP1242P15 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405605 ID=DR405605; Name=DR405605; organism=Citrus sinensis; type=EST; length=422bp
GGGGAAAGTATGATTTCTTCAATTCTCACACGAGAATAGAAGGATTTTTG
TTTTGATTGGGTCGGTTCCAAGAAGTTTTTTTTGTCTACCTTACTTTCTT
TTCTTCATTTTTATCTTATATCAATAAGATATTAATAACTCAATCAAAAT
AAAATTATCTCCAAGAACAAAATGTTTGTTATGCTTAATATCTTTAGTTT
AATGTATATCTGTCTTAATTCTGCCCTTTATTCGAGTAGTTTTTTATTCG
CTAAATTACCCGAGGCCTACGCTTTTTGAATCCAATTGTAGATGTTATGC
CAGTAATACCTGTTCTATTTTTTCTCTTAGCCTTTGTTTGGCAAGCTGCT
GTAAGTTTTCGATAAGATCTTTAATATTGTGCTAGAAAAATTCATGATTT
ATTCTAGTTCGAAAAAAAAAAA
back to top