DR405602

Overview
NameDR405602
Unique NameDR405602
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length643
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DR405602_ssr86 microsatellite DR405602_ssr86:86..100. BLAST: Citrus ESTs to Prunus persica proteins V1
DR405602_ssr11 microsatellite DR405602_ssr11:11..22. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2183 contig Csv1_Contig2183:1..643. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR405602 vs. ExPASy Swiss-Prot
Match: M2OM_DICDI (Probable mitochondrial 2-oxoglutarate/malate carrier protein OS=Dictyostelium discoideum GN=ucpC PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.495e-27
Identity = 71/174 (40.80%), Postives = 96/174 (55.17%), Query Frame = 1
Query:  121 VKGFVEGGIASIVAGCSTHPLDLIKVRMQLQGENVAVPQQVHSLRPALAFHSNSATVFPSNSIHIPTTAPELPPRVGPISVGVKIFQTEGVAALFSGVSATVLRQTLYSTTRMGLYDVLKQKWTDKDSNRMTLSRKVAAGLISGAVGATVGNPADVAMVRMQADGRLPPAQRRN 642
            +K FV GG+A +++   THP+D +KVRMQLQGE   V                                    P+ G + + V I QTEG   L+ G+SA++LRQ  Y+TTR GLYD++K     KD   +  ++K+  G++SGA GA VG PAD+ MVRMQADG+LP   RRN
Sbjct:   25 LKQFVIGGLAGMLSSAFTHPIDSLKVRMQLQGEGTGVG-----------------------------------PKRGALKMLVHINQTEGFFTLYKGLSASLLRQATYTTTRFGLYDLIKDI-VAKDDKPLPFTQKIMVGMLSGAGGAIVGTPADLTMVRMQADGKLPFNLRRN 162          
BLAST of DR405602 vs. ExPASy Swiss-Prot
Match: M2OM_MOUSE (Mitochondrial 2-oxoglutarate/malate carrier protein OS=Mus musculus GN=Slc25a11 PE=1 SV=3)

HSP 1 Score: 99.7525 bits (247), Expect = 1.311e-20
Identity = 62/170 (36.47%), Postives = 87/170 (51.18%), Query Frame = 1
Query:  130 FVEGGIASIVAGCSTHPLDLIKVRMQLQGENVAVPQQVHSLRPALAFHSNSATVFPSNSIHIPTTAPELPPRVGPISVGVKIFQTEGVAALFSGVSATVLRQTLYSTTRMGLYDVLKQKWTDKDSNRMTLSRKVAAGLISGAVGATVGNPADVAMVRMQADGRLPPAQRR 639
            F+ GG+A + A     PLDL+K RMQL GE     +   S      FH+ ++                             I +TEG+  +++G+SA +LRQ  Y+TTR+G+Y VL ++ T  D        K   G+ +GA GA VG PA+VA++RM ADGRLP  QRR
Sbjct:   25 FLFGGLAGMGATVFVQPLDLVKNRMQLSGEGAKTREYKTS------FHALTS-----------------------------ILKTEGLKGIYTGLSAGLLRQATYTTTRLGIYTVLFERLTGADGTPPGFLLKALIGMTAGATGAFVGTPAEVALIRMTADGRLPADQRR 159          
BLAST of DR405602 vs. ExPASy Swiss-Prot
Match: M2OM_HUMAN (Mitochondrial 2-oxoglutarate/malate carrier protein OS=Homo sapiens GN=SLC25A11 PE=1 SV=3)

HSP 1 Score: 98.2117 bits (243), Expect = 3.814e-20
Identity = 61/170 (35.88%), Postives = 86/170 (50.59%), Query Frame = 1
Query:  130 FVEGGIASIVAGCSTHPLDLIKVRMQLQGENVAVPQQVHSLRPALAFHSNSATVFPSNSIHIPTTAPELPPRVGPISVGVKIFQTEGVAALFSGVSATVLRQTLYSTTRMGLYDVLKQKWTDKDSNRMTLSRKVAAGLISGAVGATVGNPADVAMVRMQADGRLPPAQRR 639
            F+ GG+A + A     PLDL+K RMQL GE     +   S      FH+ ++                             I + EG+  +++G+SA +LRQ  Y+TTR+G+Y VL ++ T  D        K   G+ +GA GA VG PA+VA++RM ADGRLP  QRR
Sbjct:   25 FLFGGLAGMGATVFVQPLDLVKNRMQLSGEGAKTREYKTS------FHALTS-----------------------------ILKAEGLRGIYTGLSAGLLRQATYTTTRLGIYTVLFERLTGADGTPPGFLLKAVIGMTAGATGAFVGTPAEVALIRMTADGRLPADQRR 159          
BLAST of DR405602 vs. ExPASy Swiss-Prot
Match: M2OM_BOVIN (Mitochondrial 2-oxoglutarate/malate carrier protein OS=Bos taurus GN=SLC25A11 PE=1 SV=3)

HSP 1 Score: 98.2117 bits (243), Expect = 3.814e-20
Identity = 61/170 (35.88%), Postives = 85/170 (50.00%), Query Frame = 1
Query:  130 FVEGGIASIVAGCSTHPLDLIKVRMQLQGENVAVPQQVHSLRPALAFHSNSATVFPSNSIHIPTTAPELPPRVGPISVGVKIFQTEGVAALFSGVSATVLRQTLYSTTRMGLYDVLKQKWTDKDSNRMTLSRKVAAGLISGAVGATVGNPADVAMVRMQADGRLPPAQRR 639
            F+ GG+A + A     PLDL+K RMQL GE     +   S      FH+                              + I + EG+  +++G+SA +LRQ  Y+TTR+G+Y VL ++ T  D        K   G+ +GA GA VG PA+VA++RM ADGRLP  QRR
Sbjct:   25 FLFGGLAGMGATVFVQPLDLVKNRMQLSGEGAKTREYKTS------FHAL-----------------------------ISILRAEGLRGIYTGLSAGLLRQATYTTTRLGIYTVLFERLTGADGTPPGFLLKAVIGMTAGATGAFVGTPAEVALIRMTADGRLPVDQRR 159          
BLAST of DR405602 vs. ExPASy Swiss-Prot
Match: M2OM_RAT (Mitochondrial 2-oxoglutarate/malate carrier protein OS=Rattus norvegicus GN=Slc25a11 PE=2 SV=3)

HSP 1 Score: 94.7449 bits (234), Expect = 4.217e-19
Identity = 60/170 (35.29%), Postives = 85/170 (50.00%), Query Frame = 1
Query:  130 FVEGGIASIVAGCSTHPLDLIKVRMQLQGENVAVPQQVHSLRPALAFHSNSATVFPSNSIHIPTTAPELPPRVGPISVGVKIFQTEGVAALFSGVSATVLRQTLYSTTRMGLYDVLKQKWTDKDSNRMTLSRKVAAGLISGAVGATVGNPADVAMVRMQADGRLPPAQRR 639
            F+ GG+A + A     PLDL+  RMQL GE     +   S      FH+ ++                             I + EG+  +++G+SA +LRQ  Y+TTR+G+Y VL ++ T  D        K   G+ +GA GA VG PA+VA++RM ADGRLP  QRR
Sbjct:   25 FLFGGLAGMGATVFVQPLDLVXNRMQLSGEGAKTREYKTS------FHALTS-----------------------------ILKAEGLRGIYTGLSAGLLRQATYTTTRLGIYTVLFERLTGADGTPPGFLLKALIGMTAGATGAFVGPPAEVALIRMTADGRLPADQRR 159          
BLAST of DR405602 vs. ExPASy Swiss-Prot
Match: DIC_MOUSE (Mitochondrial dicarboxylate carrier OS=Mus musculus GN=Slc25a10 PE=2 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 5.507e-19
Identity = 56/168 (33.33%), Postives = 80/168 (47.62%), Query Frame = 1
Query:  139 GGIASIVAGCSTHPLDLIKVRMQLQGENVAVPQQVHSLRPALAFHSNSATVFPSNSIHIPTTAPELPPRVGPISVGVKIFQTEGVAALFSGVSATVLRQTLYSTTRMGLYDVLKQKWTDKDSNRMTLSRKVAAGLISGAVGATVGNPADVAMVRMQADGRLPPAQRRN 642
            GG+AS  A C THPLDL+KV +Q Q E                                         ++    + +++ +T+G  AL++G+SA++ RQ  YS TR  +Y+ ++   T      +    KV  G ISG  G  VG PAD+  VRMQ D +LPP+QRRN
Sbjct:   12 GGLASCGAACCTHPLDLLKVHLQTQQE----------------------------------------VKLRMTGMALQVVRTDGFLALYNGLSASLCRQMTYSLTRFAIYETMRDYMTKDSQGPLPFYNKVLLGGISGLTGGFVGTPADLVNVRMQNDMKLPPSQRRN 139          
BLAST of DR405602 vs. ExPASy Swiss-Prot
Match: DIC_HUMAN (Mitochondrial dicarboxylate carrier OS=Homo sapiens GN=SLC25A10 PE=1 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 1.602e-18
Identity = 54/168 (32.14%), Postives = 79/168 (47.02%), Query Frame = 1
Query:  139 GGIASIVAGCSTHPLDLIKVRMQLQGENVAVPQQVHSLRPALAFHSNSATVFPSNSIHIPTTAPELPPRVGPISVGVKIFQTEGVAALFSGVSATVLRQTLYSTTRMGLYDVLKQKWTDKDSNRMTLSRKVAAGLISGAVGATVGNPADVAMVRMQADGRLPPAQRRN 642
            GG+AS  A C THPLDL+KV +Q Q E                                         ++    + +++ +T+G+ AL+SG+SA++ RQ  YS TR  +Y+ ++ +        +    KV  G +SG  G  VG PAD+  VRMQ D +LP  QRRN
Sbjct:   13 GGLASCGAACCTHPLDLLKVHLQTQQE----------------------------------------VKLRMTGMALRVVRTDGILALYSGLSASLCRQMTYSLTRFAIYETVRDRVAKGSQGPLPFHEKVLLGSVSGLAGGFVGTPADLVNVRMQNDVKLPQGQRRN 140          
BLAST of DR405602 vs. ExPASy Swiss-Prot
Match: UCP5_MOUSE (Brain mitochondrial carrier protein 1 OS=Mus musculus GN=Slc25a14 PE=2 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 7.953e-18
Identity = 54/166 (32.53%), Postives = 88/166 (53.01%), Query Frame = 1
Query:  124 KGFVEGGIASIVAGCSTHPLDLIKVRMQLQGENVAVPQQVHSLRPALAFHSNSATVFPSNSIHIPTTAPELPPRVGPISVGVKIFQTEGVAALFSGVSATVLRQTLYSTTRMGLYDVLKQKWTDKDSNRMTLSRKVAAGLISGAVGATVGNPADVAMVRMQADGRL 621
            K FV GG+ASIVA   T P+DL K R+Q+QG+++ V  +   ++    FH+                               +I++ EG+ AL+SG++  +LRQ  Y T ++G+Y  LK+ + ++  +  TL   +  G++SG + +T+ NP DV  +RMQA G L
Sbjct:   42 KPFVYGGLASIVAEFGTFPVDLTKTRLQVQGQSIDV--RFKEIKYRGMFHAL-----------------------------FRIYKEEGILALYSGIAPALLRQASYGTIKIGIYQSLKRLFVERLEDE-TLLINMICGVVSGVISSTIANPTDVLKIRMQAQGSL 175          
BLAST of DR405602 vs. ExPASy Swiss-Prot
Match: KMCP1_XENTR (Kidney mitochondrial carrier protein 1 OS=Xenopus tropicalis GN=slc25a30 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.039e-17
Identity = 59/166 (35.54%), Postives = 85/166 (51.20%), Query Frame = 1
Query:  124 KGFVEGGIASIVAGCSTHPLDLIKVRMQLQGENVAVPQQVHSLRPALAFHSNSATVFPSNSIHIPTTAPELPPRVGPISVGVKIFQTEGVAALFSGVSATVLRQTLYSTTRMGLYDVLKQKWTDKDSNRMTLSRKVAAGLISGAVGATVGNPADVAMVRMQADGRL 621
            K F+ GG+ASI A C T P+DL K R+Q+QG+                  +N A               E+  R G +   V+I++ EGV AL+SG++  +LRQ  Y T ++G Y  LK+ + D   +  TL   V  G++SG V + + NP DV  +RMQA G L
Sbjct:    7 KPFIYGGLASITAECGTFPIDLTKTRLQVQGQ------------------ANDAKY------------KEIRYR-GMLHAIVRIWKEEGVKALYSGIAPAMLRQASYGTIKIGTYQSLKRLFVDCPEDE-TLVINVFCGVLSGVVSSCIANPTDVLKIRMQAQGSL 140          
BLAST of DR405602 vs. ExPASy Swiss-Prot
Match: KMCP1_MACFA (Kidney mitochondrial carrier protein 1 OS=Macaca fascicularis GN=SLC25A30 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.947e-17
Identity = 56/162 (34.57%), Postives = 85/162 (52.47%), Query Frame = 1
Query:  124 KGFVEGGIASIVAGCSTHPLDLIKVRMQLQGENVAVPQQVHSLRPALAFHSNSATVFPSNSIHIPTTAPELPPRVGPISVGVKIFQTEGVAALFSGVSATVLRQTLYSTTRMGLYDVLKQKWTDKDSNRMTLSRKVAAGLISGAVGATVGNPADVAMVRMQA 609
            K FV GG+ASI A C T P+DL K R+Q+QG+                  +N A               E+  R G +   V+I + EG+ AL+SG++  +LRQ+ Y T ++G Y  LK+ + ++  +  TL   V  G++SG + +T+ NP DV  +RMQA
Sbjct:    7 KPFVYGGLASITAECGTFPIDLTKTRLQIQGQ------------------TNDAKF------------KEIRYR-GMLHALVRIGREEGLKALYSGIAPAMLRQSSYGTIKIGTYQSLKRLFVERPEDE-TLLINVICGILSGVISSTIANPTDVLKIRMQA 136          
The following BLAST results are available for this feature:
BLAST of DR405602 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
M2OM_DICDI5.495e-2740.80Probable mitochondrial 2-oxoglutarate/malate carri... [more]
M2OM_MOUSE1.311e-2036.47Mitochondrial 2-oxoglutarate/malate carrier protei... [more]
M2OM_HUMAN3.814e-2035.88Mitochondrial 2-oxoglutarate/malate carrier protei... [more]
M2OM_BOVIN3.814e-2035.88Mitochondrial 2-oxoglutarate/malate carrier protei... [more]
M2OM_RAT4.217e-1935.29Mitochondrial 2-oxoglutarate/malate carrier protei... [more]
DIC_MOUSE5.507e-1933.33Mitochondrial dicarboxylate carrier OS=Mus musculu... [more]
DIC_HUMAN1.602e-1832.14Mitochondrial dicarboxylate carrier OS=Homo sapien... [more]
UCP5_MOUSE7.953e-1832.53Brain mitochondrial carrier protein 1 OS=Mus muscu... [more]
KMCP1_XENTR1.039e-1735.54Kidney mitochondrial carrier protein 1 OS=Xenopus ... [more]
KMCP1_MACFA3.947e-1734.57Kidney mitochondrial carrier protein 1 OS=Macaca f... [more]

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Properties
Property NameValue
Genbank descriptionCSAD-PNP1242P12 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone CSAD-PNP1242P12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405602 ID=DR405602; Name=DR405602; organism=Citrus sinensis; type=EST; length=643bp
GGGGACCATCAGCAAGCAAGCATTACTATTACATTACGCGCTTGACACTC
TTCACTTTGTTTCCTGATCCTCCAATTTTTTTTTAATTATTATTATTATT
GTTATTTTTAAATCATGGGTGTTAAAGGATTTGTTGAGGGCGGAATTGCT
TCAATTGTAGCTGGTTGCTCTACACATCCTCTCGATCTAATTAAAGTTCG
CATGCAACTCCAAGGCGAAAACGTCGCCGTTCCCCAGCAAGTCCACTCTC
TCCGTCCGGCTCTGGCTTTTCATTCCAACTCAGCCACTGTCTTTCCCTCT
AATTCCATCCATATCCCCACCACCGCACCAGAGCTGCCGCCACGTGTCGG
TCCTATCTCCGTCGGAGTCAAGATCTTTCAAACCGAAGGCGTCGCCGCTT
TGTTCTCTGGCGTTTCCGCCACCGTGCTGAGACAAACATTGTACTCCACC
ACTCGCATGGGGCTTTACGATGTGCTCAAACAAAAGTGGACTGACAAAGA
CTCCAACCGCATGACGTTGAGCCGCAAAGTAGCGGCCGGTTTGATCTCCG
GAGCAGTTGGGGCCACGGTTGGCAACCCCGCTGACGTGGCAATGGTCCGC
ATGCAAGCCGACGGCCGCCTCCCACCGGCTCAGCGGCGTAACT
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