DR405598

Overview
NameDR405598
Unique NameDR405598
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length662
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DR405598_ssr75 microsatellite DR405598_ssr75:75..98. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1509 contig Csv1_Contig1509:129..790. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR405598 vs. ExPASy Swiss-Prot
Match: CY561_PONAB (Cytochrome b561 OS=Pongo abelii GN=CYB561 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 9.483e-22
Identity = 57/155 (36.77%), Postives = 74/155 (47.74%), Query Frame = 1
Query:  184 WCLGFRGGLAWEDTNKNLIFNLHPVXXXXXXXXXXXEAIMSYKGL-NLRKEVKKXXXXXXXXXXXXXXXXXXYAAFKYHNESAIVNLYSLHSWLGIAVISLYGVQWLYGFVIFFYPGGSTGLRSESLPWHVLFGLFVYILAVANAAIGFLEKLXF 645
            W   +RGG+AWE    +L FN HP+           +A++ Y+   N  K   K                   A F YH +    +LYSLHSW GI V  LY VQWL GF  F +PG S  LRS   P H+ FG  +++L+V  A +G  E L F
Sbjct:   34 WLGLYRGGIAWES---DLQFNAHPLCMVIGLIFLQGDALLVYRVFRNEAKRTTKVLHGLLHIFALVIALVGLVAVFDYHRKEGYADLYSLHSWCGILVFVLYFVQWLVGFSFFLFPGASFSLRSRYRPQHIFFGATIFLLSVGTALLGLKEALLF 185          
BLAST of DR405598 vs. ExPASy Swiss-Prot
Match: CY561_SHEEP (Cytochrome b561 OS=Ovis aries GN=CYB561 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.239e-21
Identity = 56/155 (36.13%), Postives = 76/155 (49.03%), Query Frame = 1
Query:  184 WCLGFRGGLAWEDTNKNLIFNLHPVXXXXXXXXXXXEAIMSYKGL-NLRKEVKKXXXXXXXXXXXXXXXXXXYAAFKYHNESAIVNLYSLHSWLGIAVISLYGVQWLYGFVIFFYPGGSTGLRSESLPWHVLFGLFVYILAVANAAIGFLEKLXF 645
            W   +RGG+AWE     L FN+HP+           +A++ Y+   N  K   K                   A F++H +    +LYSLHSW GI V +L+  QWL GF  F +PG S  LRS   P HV FG  +++L+VA A +G  E L F
Sbjct:   35 WLGMYRGGIAWESA---LQFNVHPLCMVIGLVFLQGDALLVYRVFRNEAKRTTKVLHGLLHVFAFVIALVGLVAVFEHHRKKGYADLYSLHSWCGILVFALFFAQWLVGFSFFLFPGASFSLRSRYRPQHVFFGAAIFLLSVATALLGLKEALLF 186          
BLAST of DR405598 vs. ExPASy Swiss-Prot
Match: CY561_BOVIN (Cytochrome b561 OS=Bos taurus GN=CYB561 PE=1 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.239e-21
Identity = 56/155 (36.13%), Postives = 76/155 (49.03%), Query Frame = 1
Query:  184 WCLGFRGGLAWEDTNKNLIFNLHPVXXXXXXXXXXXEAIMSYKGL-NLRKEVKKXXXXXXXXXXXXXXXXXXYAAFKYHNESAIVNLYSLHSWLGIAVISLYGVQWLYGFVIFFYPGGSTGLRSESLPWHVLFGLFVYILAVANAAIGFLEKLXF 645
            W   +RGG+AWE     L FN+HP+           +A++ Y+   N  K   K                   A F++H +    +LYSLHSW GI V +L+  QWL GF  F +PG S  LRS   P HV FG  +++L+VA A +G  E L F
Sbjct:   35 WLGMYRGGIAWESA---LQFNVHPLCMIIGLVFLQGDALLVYRVFRNEAKRTTKVLHGLLHVFAFVIALVGLVAVFEHHRKKGYADLYSLHSWCGILVFALFFAQWLVGFSFFLFPGASFSLRSRYRPQHVFFGAAIFLLSVATALLGLKEALLF 186          
BLAST of DR405598 vs. ExPASy Swiss-Prot
Match: CY561_HUMAN (Cytochrome b561 OS=Homo sapiens GN=CYB561 PE=2 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 1.618e-21
Identity = 57/155 (36.77%), Postives = 73/155 (47.10%), Query Frame = 1
Query:  184 WCLGFRGGLAWEDTNKNLIFNLHPVXXXXXXXXXXXEAIMSYKGL-NLRKEVKKXXXXXXXXXXXXXXXXXXYAAFKYHNESAIVNLYSLHSWLGIAVISLYGVQWLYGFVIFFYPGGSTGLRSESLPWHVLFGLFVYILAVANAAIGFLEKLXF 645
            W   +RGG+AWE    +L FN HP+            A++ Y+   N  K   K                   A F YH +    +LYSLHSW GI V  LY VQWL GF  F +PG S  LRS   P H+ FG  +++L+V  A +G  E L F
Sbjct:   34 WLGLYRGGIAWES---DLQFNAHPLCMVIGLIFLQGNALLVYRVFRNEAKRTTKVLHGLLHIFALVIALVGLVAVFDYHRKKGYADLYSLHSWCGILVFVLYFVQWLVGFSFFLFPGASFSLRSRYRPQHIFFGATIFLLSVGTALLGLKEALLF 185          
BLAST of DR405598 vs. ExPASy Swiss-Prot
Match: CY561_PIG (Cytochrome b561 OS=Sus scrofa GN=CYB561 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.604e-21
Identity = 56/155 (36.13%), Postives = 73/155 (47.10%), Query Frame = 1
Query:  184 WCLGFRGGLAWEDTNKNLIFNLHPVXXXXXXXXXXXEAIMSYKGL-NLRKEVKKXXXXXXXXXXXXXXXXXXYAAFKYHNESAIVNLYSLHSWLGIAVISLYGVQWLYGFVIFFYPGGSTGLRSESLPWHVLFGLFVYILAVANAAIGFLEKLXF 645
            W   +RGG+AWE     L FN+HP+           +A++ Y+   N  K   K                   A F YH +  I +LYSLHSW GI V  L+  QWL G   F +PG S  LRS   P HV FG  +++L+V  A +G  E L F
Sbjct:   35 WLGAYRGGIAWESA---LQFNVHPLCMIIGLVFLQGDALLVYRVFRNEAKRTTKILHGLLHVLAFVIALVGLVAVFDYHRKKGIADLYSLHSWCGILVFVLFLAQWLVGLGFFLFPGASFSLRSRYRPQHVFFGAAIFLLSVGTALLGLKEALLF 186          
BLAST of DR405598 vs. ExPASy Swiss-Prot
Match: CY561_MOUSE (Cytochrome b561 OS=Mus musculus GN=Cyb561 PE=2 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 4.706e-21
Identity = 55/155 (35.48%), Postives = 73/155 (47.10%), Query Frame = 1
Query:  184 WCLGFRGGLAWEDTNKNLIFNLHPVXXXXXXXXXXXEAIMSYKGLNLR-KEVKKXXXXXXXXXXXXXXXXXXYAAFKYHNESAIVNLYSLHSWLGIAVISLYGVQWLYGFVIFFYPGGSTGLRSESLPWHVLFGLFVYILAVANAAIGFLEKLXF 645
            W   +RGG+AWE +   L FN+HP+           +A++ Y+      K   K                   A F YH +    +LYSLHSW GI V  LY VQWL GF  F +PG S  LRS   P H+ FG  +++ +V  A +G  E L F
Sbjct:   33 WLGLYRGGIAWESS---LQFNVHPLCMVIGMIFLQGDALLVYRVFRREAKRTTKILHGLLHVFAFIIALVGLVAVFDYHKKKGYADLYSLHSWCGILVFVLYFVQWLVGFSFFLFPGASFSLRSRYRPQHIFFGATIFLFSVGTALLGLKEALLF 184          
BLAST of DR405598 vs. ExPASy Swiss-Prot
Match: CYAC3_RAT (Cytochrome b ascorbate-dependent protein 3 OS=Rattus norvegicus GN=Cybasc3 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.085e-17
Identity = 57/161 (35.40%), Postives = 74/161 (45.96%), Query Frame = 1
Query:  184 WCLGFRGGLAWEDTNKNLIFNLHPVXXXXXXXXXXXEAIMSYK------GLNLRKEVKKXXXXXXXXXXXXXXXXXXYAAFKYHNESAIVNLYSLHSWLGIAVISLYGVQWLYGFVIFFYPGGSTGLRSESLPWHVLFGLFVYILAVANAAIGFLEKLXFL 648
            W   +RGG AW+ T   L+FN HPV            A + Y+      G  L  +V                     A F +HN S I +LYSLHSWLGI  ++L+  QW  GF +F  P  S  LRS   P HV FG  +  L++A+   G  EKL F+
Sbjct:   27 WMQYWRGGFAWDGTV--LMFNWHPVLMVSGMVVLYGAASLVYRLPASWVGPKLPWKVLHAALHLLAFTVTVVGLT---AVFGFHNHSKITHLYSLHSWLGITTVALFACQWFLGFAVFLLPWASQWLRSLLKPVHVFFGACILSLSIASVISGINEKLFFV 182          
BLAST of DR405598 vs. ExPASy Swiss-Prot
Match: CYAC3_MOUSE (Cytochrome b ascorbate-dependent protein 3 OS=Mus musculus GN=Cybasc3 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.417e-17
Identity = 56/161 (34.78%), Postives = 73/161 (45.34%), Query Frame = 1
Query:  184 WCLGFRGGLAWEDTNKNLIFNLHPVXXXXXXXXXXXEAIMSYK------GLNLRKEVKKXXXXXXXXXXXXXXXXXXYAAFKYHNESAIVNLYSLHSWLGIAVISLYGVQWLYGFVIFFYPGGSTGLRSESLPWHVLFGLFVYILAVANAAIGFLEKLXFL 648
            W   +RGG AW+ T   L+FN HPV            A + Y+      G  L  +V                     A F++HN S I +LYSLHSWLGI  + L+  QW  GF +F  P  S  LRS   P HV FG  +  L++ +   G  EKL F+
Sbjct:   27 WMQYWRGGFAWDGTV--LMFNWHPVLMVAGMVVLYGAASLVYRLPSSWVGPRLPWKV---LHAALHLLAFTCTVVGLIAVFRFHNHSRIAHLYSLHSWLGITTVVLFACQWFLGFAVFLLPWASQWLRSLLKPLHVFFGACILSLSITSVISGINEKLFFV 182          
BLAST of DR405598 vs. ExPASy Swiss-Prot
Match: CY561_CAEEL (Putative cytochrome b561 OS=Caenorhabditis elegans GN=F55H2.5 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.851e-17
Identity = 52/161 (32.30%), Postives = 76/161 (47.20%), Query Frame = 1
Query:  184 WCLGFRGGLAW-EDTNKNLIFNLHPVXXXXXXXXXXXEAIMSYKGL-NLRKEVKKXXXXXXXXXXXXXXXXXXYAAFKYHN--------ESAIVNLYSLHSWLGIAVISLYGVQWLYGFVIFFYPGGSTGLRSESLPWHVLFGLFVYILAVANAAIGFLEK 636
            W   F  G AW ED +K   FN HP            EA++ Y+   N RK+  K                   A F YHN         + IVNL SLHSW+G++V+ LY  Q++ GF+ +F+PG    +R   +P+H +FG+ ++I      A+G  E+
Sbjct:   42 WMSKFESGFAWNEDPDKE--FNYHPTFMIMGMVFLFGEALLVYRVFRNERKKFSKTLHVILHSCVLVFMLMALKAVFDYHNLHKDPSGNPAPIVNLVSLHSWIGLSVVILYFAQYIVGFITYFFPGMPIPIRQLVMPFHQMFGVLIFIFVSITVAMGISER 200          
BLAST of DR405598 vs. ExPASy Swiss-Prot
Match: CYAC3_BOVIN (Cytochrome b ascorbate-dependent protein 3 OS=Bos taurus GN=CYBASC3 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.033e-17
Identity = 56/165 (33.94%), Postives = 74/165 (44.85%), Query Frame = 1
Query:  184 WCLGFRGGLAWEDTNKNLIFNLHPVXXXXXXXXXXXEAIMSYK------GLNLRKEVKKXXXXXXXXXXXXXXXXXXYAAFKYHNESAIVNLYSLHSWLGIAVISLYGVQWLYGFVIFFYPGGSTGLRSESLPWHVLFGLFVYILAVANAAIGFLEKLXFLENSG 660
            W   + GG AW+ +   L+FN HPV            A + Y+      G  L     K                  +A F++HN + I +LYSLHSWLGI  + L+  QW  GF +F  P  S  LRS   P HV FG  +  LA+A+   G  EKL F   +G
Sbjct:   27 WMRYWHGGFAWDGSM--LMFNWHPVLMVTGMVVLYSAASLVYRLPQSWVGPRLPW---KSGHAAMHLLAFLLTVLGLHAVFEFHNHAKIPHLYSLHSWLGITTVFLFACQWFLGFSVFLLPWASMWLRSLLKPIHVFFGASILSLAIASVVSGINEKLFFSLKNG 186          
The following BLAST results are available for this feature:
BLAST of DR405598 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
CY561_PONAB9.483e-2236.77Cytochrome b561 OS=Pongo abelii GN=CYB561 PE=2 SV=... [more]
CY561_SHEEP1.239e-2136.13Cytochrome b561 OS=Ovis aries GN=CYB561 PE=2 SV=1[more]
CY561_BOVIN1.239e-2136.13Cytochrome b561 OS=Bos taurus GN=CYB561 PE=1 SV=2[more]
CY561_HUMAN1.618e-2136.77Cytochrome b561 OS=Homo sapiens GN=CYB561 PE=2 SV=... [more]
CY561_PIG3.604e-2136.13Cytochrome b561 OS=Sus scrofa GN=CYB561 PE=2 SV=1[more]
CY561_MOUSE4.706e-2135.48Cytochrome b561 OS=Mus musculus GN=Cyb561 PE=2 SV=... [more]
CYAC3_RAT1.085e-1735.40Cytochrome b ascorbate-dependent protein 3 OS=Ratt... [more]
CYAC3_MOUSE1.417e-1734.78Cytochrome b ascorbate-dependent protein 3 OS=Mus ... [more]
CY561_CAEEL1.851e-1732.30Putative cytochrome b561 OS=Caenorhabditis elegans... [more]
CYAC3_BOVIN7.033e-1733.94Cytochrome b ascorbate-dependent protein 3 OS=Bos ... [more]

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Properties
Property NameValue
Genbank descriptionCSAD-PNP1242P07 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone CSAD-PNP1242P07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405598 ID=DR405598; Name=DR405598; organism=Citrus sinensis; type=EST; length=662bp
GGGGGTAGCCAAAGAAACCGTTAAAGGGCCAACGACTTTGCTAACTCTGT
AAGNNNNNTTCCTTTTGCCTCTCAAAGAAGAAGAAGAAGAAGAAGAAGNG
AGATGGCTATCGGAGTAAAAGCTCTTCCGATCACGTTTCTGGCACACGCG
GTTGCCATCGTGGCTGCGATTNNNGTGCTGGTTTGGTGCCTTGGCTTTCG
CGGTGGATTAGCATGGGAAGATACTAATAAAAATCTCATCTTCAATCTAC
ATCCTGTGCTGATGCTGATTGGCTTAATCATCATTGGGGGTGAAGCCATT
ATGAGTTACAAAGGACTTAATTTGAGAAAAGAAGTGAAGAAAGTGATACA
CCTTGTTCTCCATGCTATTGCGCTTATACTGGGCATTATCGGCATCTATG
CTGCTTTCAAATATCATAACGAGAGCGCCATTGTCAATCTTTATAGCTTG
CATTCTTGGCTTGGAATTGCCGTAATTTCCCTTTATGGCGTTCAGTGGTT
ATACGGGTTTGTAATTTTCTTCTATCCTGGAGGATCAACTGGACTAAGAA
GTGAATCGCTTCCATGGCACGTACTATTCGGGCTGTTTGTGTACATTCTG
GCCGTTGCCAATGCAGCCATCGGGTTCCTGGAGAAGCTNNCATTCCTGGA
GAATTCAGGCCT
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