DR405287

Overview
NameDR405287
Unique NameDR405287
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length716
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6245 contig Csv1_Contig6245:1..716. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR405287 vs. ExPASy Swiss-Prot
Match: NIFU4_ARATH (NifU-like protein 4, mitochondrial OS=Arabidopsis thaliana GN=NIFU4 PE=2 SV=1)

HSP 1 Score: 291.197 bits (744), Expect = 3.701e-78
Identity = 145/194 (74.74%), Postives = 165/194 (85.05%), Query Frame = 2
Query:  137 SRTLSYLSNPITSQNSTLLKSIP-LSSSVQSGKWNLFRVQRRTMFIQTQPTPNPSSLMFYPGKPVMEVGSADFPNARAAMNSPLAKSLYGVDGITRVFFGSDFITVTKSEDTSWDLLKPEIFAAIMDFYSSGQPLFLDSETAAAKDTAINEDDSETVAMIKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLR 715
            SR   ++S      + T   ++P L+SS+ + KWN    QRRTMFIQTQ TPNPSSLMFYPGKPVMEVGSADFPN R+A+ SPLAKS+Y +DG+ RVFFGSDF+TVTKS+D SWD+LKPEIFAA+MDFYSSGQPLFLDS+ AAAKDTAI+EDDSETVAMIKELLETRIRPAVQDDGGDIEY GFDPE+G VKLR
Sbjct:   37 SRRSLFISATNLLNSRTKDSALPSLNSSLLAQKWNFLGGQRRTMFIQTQSTPNPSSLMFYPGKPVMEVGSADFPNVRSALGSPLAKSIYSIDGVVRVFFGSDFVTVTKSDDVSWDILKPEIFAAVMDFYSSGQPLFLDSQAAAAKDTAISEDDSETVAMIKELLETRIRPAVQDDGGDIEYCGFDPESGIVKLR 230          
BLAST of DR405287 vs. ExPASy Swiss-Prot
Match: NIFU5_ARATH (NifU-like protein 5, mitochondrial OS=Arabidopsis thaliana GN=NIFU5 PE=2 SV=1)

HSP 1 Score: 266.159 bits (679), Expect = 1.275e-70
Identity = 125/155 (80.65%), Postives = 144/155 (92.90%), Query Frame = 2
Query:  251 QRRTMFIQTQPTPNPSSLMFYPGKPVMEVGSADFPNARAAMNSPLAKSLYGVDGITRVFFGSDFITVTKSEDTSWDLLKPEIFAAIMDFYSSGQPLFLDSETAAAKDTAINEDDSETVAMIKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLR 715
            QRRTMFIQTQ TPNPSSLMF PGKPVME+GSADFPN+R+AM+SPLAK+++ +DG+ RVF+GSDF+TVTKS+D +WD+LKP+IFA +MDFYSSGQPLFLDS+  AAKDTAI+EDDSETVAMIKELLETRIRP+VQDDGGDIEY GFD ETG VKLR
Sbjct:   71 QRRTMFIQTQSTPNPSSLMFSPGKPVMEIGSADFPNSRSAMSSPLAKAIFAIDGVVRVFYGSDFVTVTKSDDVTWDILKPDIFAVVMDFYSSGQPLFLDSQATAAKDTAIHEDDSETVAMIKELLETRIRPSVQDDGGDIEYCGFDTETGIVKLR 225          
BLAST of DR405287 vs. ExPASy Swiss-Prot
Match: NFU1_MOUSE (NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Mus musculus GN=Nfu1 PE=1 SV=2)

HSP 1 Score: 177.178 bits (448), Expect = 7.788e-44
Identity = 91/154 (59.09%), Postives = 114/154 (74.03%), Query Frame = 2
Query:  257 RTMFIQTQPTPNPSSLMFYPGKPVMEVGSADFPNARAAMNSPLAKSLYGVDGITRVFFGSDFITVTK-SEDTSWDLLKPEIFAAIMDFYSSGQPLFLDSETAAAKDTAINEDDSETVAMIKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLR 715
            R MFIQTQ TPNP+SL F PGKPV+E  + DFP   AA  SPLA+ L+ ++G+  VFFG DFITVTK +E+  W+LLKP+I+A IMDF++SG PL +  ET      A +E+D E VAMIKELL+TRIRP VQ+DGGD+ YRGF  E G V+L+
Sbjct:   55 RFMFIQTQDTPNPNSLKFIPGKPVLETRTMDFPTPAAAFRSPLARQLFRIEGVKSVFFGPDFITVTKENEELDWNLLKPDIYATIMDFFASGLPL-VTEETPPPPGEAGSEEDDEVVAMIKELLDTRIRPTVQEDGGDVIYRGF--EDGIVRLK 205          
BLAST of DR405287 vs. ExPASy Swiss-Prot
Match: NFU1_DROME (NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Drosophila melanogaster GN=CG32500 PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 7.788e-44
Identity = 91/155 (58.71%), Postives = 113/155 (72.90%), Query Frame = 2
Query:  254 RRTMFIQTQPTPNPSSLMFYPGKPVMEVGSA-DFPNARAAMNSPLAKSLYGVDGITRVFFGSDFITVTKSEDTSWDLLKPEIFAAIMDFYSSGQPLFLDSETAAAKDTAINEDDSETVAMIKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLR 715
            RR+MFIQTQ TPNP SL F PG  V+  G+  DFPN   A NSPLAK L+ V+G+  VFFG+DF+T++K E   W L+KPE+FA IMDF++SG P+  D++  A  DT I EDD ETV MIKELL+TRIRP VQ+DGGDI + G+  E G VKL+
Sbjct:   64 RRSMFIQTQDTPNPESLKFLPGVDVLGKGNTYDFPNGTTAHNSPLAKLLFRVEGVKGVFFGADFVTISKQEGAEWSLIKPEVFAVIMDFFASGLPVLNDAQPNA--DTEILEDDDETVMMIKELLDTRIRPTVQEDGGDIVFMGY--EGGVVKLK 214          
BLAST of DR405287 vs. ExPASy Swiss-Prot
Match: NFU1_DROSE (NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Drosophila sechellia GN=GM13534 PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.329e-43
Identity = 91/155 (58.71%), Postives = 113/155 (72.90%), Query Frame = 2
Query:  254 RRTMFIQTQPTPNPSSLMFYPGKPVMEVGSA-DFPNARAAMNSPLAKSLYGVDGITRVFFGSDFITVTKSEDTSWDLLKPEIFAAIMDFYSSGQPLFLDSETAAAKDTAINEDDSETVAMIKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLR 715
            RR+MFIQTQ TPNP SL F PG  V+  G+  DFPN   A +SPLAK L+ V+G+  VFFG+DFIT++K E   W L+KPE+FA IMDF++SG P+  D++  A  DT I EDD ETV MIKELL+TRIRP VQ+DGGDI + G+  E G VKL+
Sbjct:   64 RRSMFIQTQDTPNPESLKFLPGVDVLGKGNTYDFPNGTTAHSSPLAKLLFRVEGVKGVFFGADFITISKQEGAEWSLIKPEVFAVIMDFFASGLPVLNDAQPNA--DTEILEDDDETVMMIKELLDTRIRPTVQEDGGDIVFMGY--EAGVVKLK 214          
BLAST of DR405287 vs. ExPASy Swiss-Prot
Match: NFU1_DROYA (NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Drosophila yakuba GN=GE15286 PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.735e-43
Identity = 90/155 (58.06%), Postives = 113/155 (72.90%), Query Frame = 2
Query:  254 RRTMFIQTQPTPNPSSLMFYPGKPVMEVGSA-DFPNARAAMNSPLAKSLYGVDGITRVFFGSDFITVTKSEDTSWDLLKPEIFAAIMDFYSSGQPLFLDSETAAAKDTAINEDDSETVAMIKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLR 715
            RR+MFIQTQ TPNP SL F PG  V+  G+  DFPN   A +SPLAK L+ V+G+  VFFG+DF+T++K E   W L+KPE+FA IMDF++SG P+  D++  A  DT I EDD ETV MIKELL+TRIRP VQ+DGGDI + G+  E G VKL+
Sbjct:   64 RRSMFIQTQDTPNPDSLKFLPGVDVLGKGNTYDFPNGTTAHSSPLAKLLFRVEGVKGVFFGADFVTISKQEGAEWSLIKPEVFAVIMDFFASGLPVLHDAQPNA--DTEILEDDDETVMMIKELLDTRIRPTVQEDGGDIVFMGY--EAGVVKLK 214          
BLAST of DR405287 vs. ExPASy Swiss-Prot
Match: NFU1_DROER (NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Drosophila erecta GN=GG17526 PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.735e-43
Identity = 90/155 (58.06%), Postives = 113/155 (72.90%), Query Frame = 2
Query:  254 RRTMFIQTQPTPNPSSLMFYPGKPVMEVGSA-DFPNARAAMNSPLAKSLYGVDGITRVFFGSDFITVTKSEDTSWDLLKPEIFAAIMDFYSSGQPLFLDSETAAAKDTAINEDDSETVAMIKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLR 715
            RR+MFIQTQ TPNP SL F PG  V+  G+  DFPN   A +SPLAK L+ V+G+  VFFG+DF+T++K E   W L+KPE+FA IMDF++SG P+  D++  A  DT I EDD ETV MIKELL+TRIRP VQ+DGGDI + G+  E G VKL+
Sbjct:   64 RRSMFIQTQDTPNPDSLKFLPGVDVLGKGNTYDFPNGTTAHSSPLAKLLFRVEGVKGVFFGADFVTISKQEGAEWSLIKPEVFAVIMDFFASGLPVLHDAQPNA--DTEILEDDDETVMMIKELLDTRIRPTVQEDGGDIVFMGY--EAGVVKLK 214          
BLAST of DR405287 vs. ExPASy Swiss-Prot
Match: NFU1_HUMAN (NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Homo sapiens GN=NFU1 PE=1 SV=2)

HSP 1 Score: 175.637 bits (444), Expect = 2.266e-43
Identity = 101/191 (52.88%), Postives = 129/191 (67.54%), Query Frame = 2
Query:  155 LSNPITSQNSTLLKSIPLSSSVQSGKWNL---FRVQRRTMFIQTQPTPNPSSLMFYPGKPVMEVGSADFPNARAAMNSPLAKSLYGVDGITRVFFGSDFITVTK-SEDTSWDLLKPEIFAAIMDFYSSGQPLFLDSETAAAKDTAINEDDSETVAMIKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLR 715
            L NP T      +K  PL   VQ   + L   F    R MFIQTQ TPNP+SL F PGKPV+E  + DFP   AA  SPLA+ L+ ++G+  VFFG DFITVTK +E+  W+LLKP+I+A IMDF++SG PL +  ET + +  A +E+D E VAMIKELL+TRIRP VQ+DGGD+ Y+GF  E G V+L+
Sbjct:   26 LKNPYT------IKKQPLHQFVQRPLFPLPAAFYHPVRYMFIQTQDTPNPNSLKFIPGKPVLETRTMDFPTPAAAFRSPLARQLFRIEGVKSVFFGPDFITVTKENEELDWNLLKPDIYATIMDFFASGLPL-VTEETPSGE--AGSEEDDEVVAMIKELLDTRIRPTVQEDGGDVIYKGF--EDGIVQLK 205          
BLAST of DR405287 vs. ExPASy Swiss-Prot
Match: NFU1_DROSI (NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Drosophila simulans GN=GD15490 PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.048e-43
Identity = 90/155 (58.06%), Postives = 113/155 (72.90%), Query Frame = 2
Query:  254 RRTMFIQTQPTPNPSSLMFYPGKPVMEVGSA-DFPNARAAMNSPLAKSLYGVDGITRVFFGSDFITVTKSEDTSWDLLKPEIFAAIMDFYSSGQPLFLDSETAAAKDTAINEDDSETVAMIKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLR 715
            RR+MFIQTQ TPNP SL F PG  V+  G+  DFP+   A +SPLAK L+ V+G+  VFFG+DFIT++K E   W L+KPE+FA IMDF++SG P+  D++  A  DT I EDD ETV MIKELL+TRIRP VQ+DGGDI + G+  E G VKL+
Sbjct:   64 RRSMFIQTQDTPNPESLKFLPGVDVLGKGNTYDFPHGTTAHSSPLAKLLFRVEGVKGVFFGADFITISKQEGAEWSLIKPEVFAVIMDFFASGLPVLNDAQPNA--DTEILEDDDETVMMIKELLDTRIRPTVQEDGGDIVFMGY--EAGVVKLK 214          
BLAST of DR405287 vs. ExPASy Swiss-Prot
Match: NFU1_DROWI (NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Drosophila willistoni GN=GK25604 PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 6.593e-43
Identity = 98/194 (50.52%), Postives = 130/194 (67.01%), Query Frame = 2
Query:  137 SRTLSYLSNPITSQNSTLLKSIPLSSSVQSGKWNLFRVQRRTMFIQTQPTPNPSSLMFYPGKPVMEVGSA-DFPNARAAMNSPLAKSLYGVDGITRVFFGSDFITVTKSEDTSWDLLKPEIFAAIMDFYSSGQPLFLDSETAAAKDTAINEDDSETVAMIKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLR 715
            SR   +L++ + +Q+S +  S P + S+      +  + +RTMFIQTQ TPNP SL F PG  V+  G+  DFP+  AA  SPLAK L+ V+G+  VFFGSDFIT++K E   W L+KPE+FA IMDF++SG P+  ++   A  DT I EDD ETV MIKELL+TRIRP VQ+DGGDI +  +D   G VKL+
Sbjct:   33 SRGFVHLTSSV-AQSSAIHVSTPSTPSL------MLIMGKRTMFIQTQDTPNPESLKFLPGVEVLGKGNTYDFPSVAAAHCSPLAKLLFRVEGVRSVFFGSDFITISKEEAAEWGLIKPEVFAVIMDFFASGLPILHEARNNA--DTEILEDDDETVMMIKELLDTRIRPTVQEDGGDIVFMSYD--NGVVKLK 215          
The following BLAST results are available for this feature:
BLAST of DR405287 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
NIFU4_ARATH3.701e-7874.74NifU-like protein 4, mitochondrial OS=Arabidopsis ... [more]
NIFU5_ARATH1.275e-7080.65NifU-like protein 5, mitochondrial OS=Arabidopsis ... [more]
NFU1_MOUSE7.788e-4459.09NFU1 iron-sulfur cluster scaffold homolog, mitocho... [more]
NFU1_DROME7.788e-4458.71NFU1 iron-sulfur cluster scaffold homolog, mitocho... [more]
NFU1_DROSE1.329e-4358.71NFU1 iron-sulfur cluster scaffold homolog, mitocho... [more]
NFU1_DROYA1.735e-4358.06NFU1 iron-sulfur cluster scaffold homolog, mitocho... [more]
NFU1_DROER1.735e-4358.06NFU1 iron-sulfur cluster scaffold homolog, mitocho... [more]
NFU1_HUMAN2.266e-4352.88NFU1 iron-sulfur cluster scaffold homolog, mitocho... [more]
NFU1_DROSI5.048e-4358.06NFU1 iron-sulfur cluster scaffold homolog, mitocho... [more]
NFU1_DROWI6.593e-4350.52NFU1 iron-sulfur cluster scaffold homolog, mitocho... [more]

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Properties
Property NameValue
Genbank descriptionCSAB-PNP1240P22 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone CSAB-PNP1240P22 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405287 ID=DR405287; Name=DR405287; organism=Citrus sinensis; type=EST; length=716bp
GGGGAATCACAAGAGAAGAGAGCTTTCTTCAAGCTGAAGCATGAGGGGAC
TGGGACGGCTATTGCAGCGAGGTCTTTCTTCACACCGGCAGAGGCCGGGT
TTCCCCAAACAAAACGACGCCGTAGTTTATGCGTATTCCAGAACGCTGTC
GTATTTGTCAAACCCGATCACTTCTCAAAATTCCACGTTACTAAAATCTA
TTCCTCTCTCTTCTTCTGTACAATCCGGAAAATGGAATCTTTTTCGAGTG
CAGAGGAGGACAATGTTTATACAAACGCAGCCAACACCAAATCCTTCGTC
TCTTATGTTTTATCCAGGGAAGCCTGTTATGGAAGTTGGGAGTGCAGATT
TCCCGAATGCTCGCGCAGCAATGAACTCTCCATTGGCAAAATCCCTTTAC
GGGGTTGATGGTATTACTCGGGTTTTCTTTGGTTCAGATTTCATCACTGT
GACAAAATCAGAGGATACTTCTTGGGATTTACTCAAACCTGAAATTTTTG
CTGCAATTATGGACTTTTATTCGTCAGGGCAACCACTTTTTCTAGACTCA
GAAACTGCAGCAGCCAAAGACACAGCTATTAATGAGGATGACTCAGAAAC
TGTTGCAATGATCAAAGAACTCCTCGAGACCCGTATTCGGCCAGCTGTGC
AAGATGACGGTGGGGACATTGAGTACAGAGGATTTGATCCGGAAACAGGA
ACAGTCAAATTAAGAA
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