DR405252

Overview
NameDR405252
Unique NameDR405252
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length676
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DR405252 vs. ExPASy Swiss-Prot
Match: Y4833_ARATH (Uncharacterized protein At4g08330, chloroplastic OS=Arabidopsis thaliana GN=At4g08330 PE=1 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 7.001e-44
Identity = 88/136 (64.71%), Postives = 103/136 (75.74%), Query Frame = 3 
Query:  210 SFSSSISQRHVSYSCGSCGYELNLSSCNRNISSIGLKYGKSMKRGIIAFVDIDESRFTQVDELQCIPHFSKNSWGILRHRTKLLCRKCGNPIGIAYTDKTSAYSPKSNGSDSPSVPGASGRRKYDVRIRALQPSSS 617
            S SSS S RHV+YSCGSCGYELNLSS NR  S+IG KYGKSMK GII+F +IDE RF+QVDE QC+PHFS+ SWG+ RHRTKLLCRKC N IG A  +K   Y+  +  SD P+ P      KYD+RIR+LQPSS+
Sbjct:   26 SSSSSSSMRHVNYSCGSCGYELNLSSTNRITSTIGSKYGKSMKSGIISFFNIDEGRFSQVDEFQCMPHFSRYSWGLFRHRTKLLCRKCNNYIGNASQEKAPEYALVTQNSD-PTSPRIGSVTKYDIRIRSLQPSSA 160
The following BLAST results are available for this feature:
BLAST of DR405252 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y4833_ARATH7.001e-4464.71Uncharacterized protein At4g08330, chloroplastic O... [more]
back to top
Properties
Property NameValue
Genbank descriptionCSAB-PNP1240O03 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone CSAB-PNP1240O03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405252 ID=DR405252; Name=DR405252; organism=Citrus sinensis; type=EST; length=676bp
TTTTTTTTTTTTTGCCCTTTTCACCCGCTACTTAACGGTTGCCTCCTCAG
TTCGGGTTAGCTTCGAGACAGTTGATTCAATTGTTTTGCTCAGTTGTTAA
GCTTTGCTCGAGTCACAGACACGATCAGAGCCGTTGATTTGTCTGTGGAA
ATCAAAATAAGAAAAAAAAAATGGAGGAATCTGTGTATGTTAATGGAAAT
CACCATCACTCCTTTTCTTCATCGATTTCTCAAAGACATGTTAGCTACAG
CTGTGGTTCTTGTGGGTATGAGCTAAACCTTAGCTCTTGTAATAGAAACA
TCTCATCTATTGGATTAAAATACGGAAAATCTATGAAGCGAGGGATAATA
GCGTTCGTAGACATAGATGAGAGCAGATTTACTCAAGTTGATGAGTTGCA
ATGCATACCCCACTTCTCCAAAAACTCGTGGGGCATTTTGCGCCATAGAA
CCAAACTTCTCTGCCGTAAGTGTGGTAACCCTATTGGAATTGCTTATACC
GACAAAACCTCAGCATACTCACCCAAATCAAATGGATCAGATTCACCTTC
AGTCCCTGGTGCTTCTGGTCGTAGAAAATATGATGTTAGAATACGTGCCT
TACAGCCTTCATCCAGTGAGGAATCTGGCATTCCACTCTTCTCATGATAA
TACGGCTTGAGCTTCTTCTTCATCAT
back to top