DR405244

Overview
NameDR405244
Unique NameDR405244
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length555
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DR405244 vs. ExPASy Swiss-Prot
Match: EF1A_ORYSJ (Elongation factor 1-alpha OS=Oryza sativa subsp. japonica GN=REFA1 PE=2 SV=2)

HSP 1 Score: 181.8 bits (460), Expect = 1.945e-45
Identity = 88/91 (96.70%), Postives = 91/91 (100.00%), Query Frame = 1 
Query:    4 GYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDP 276
            GYAPVLDCHTSHIAVKF+ELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFS+YPPLGRFAVRDMRQTVAVGVIK+VEKKDP
Sbjct:  344 GYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNVEKKDP 434
[Close]
BLAST of DR405244 vs. ExPASy Swiss-Prot
Match: EF1A_MAIZE (Elongation factor 1-alpha OS=Zea mays GN=EF1A PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.945e-45
Identity = 88/91 (96.70%), Postives = 90/91 (98.90%), Query Frame = 1 
Query:    4 GYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDP 276
            GYAPVLDCHTSHIAVKF+ELVTKIDRRSGKELEKEPKFLKNGDAGMVKM+PTKPMVVETFS YPPLGRFAVRDMRQTVAVGVIKSVEKKDP
Sbjct:  344 GYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMVPTKPMVVETFSQYPPLGRFAVRDMRQTVAVGVIKSVEKKDP 434
[Close]
BLAST of DR405244 vs. ExPASy Swiss-Prot
Match: EF1A_VICFA (Elongation factor 1-alpha OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 4.332e-45
Identity = 86/91 (94.51%), Postives = 91/91 (100.00%), Query Frame = 1 
Query:    4 GYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDP 276
            GYAPVLDCHTSHIAVKF+EL+TKIDRRSGKE+EKEPKFLKNGDAGMVKMIPTKPMVVETF++YPPLGRFAVRDMRQTVAVGVIKSVEKKDP
Sbjct:  344 GYAPVLDCHTSHIAVKFAELITKIDRRSGKEIEKEPKFLKNGDAGMVKMIPTKPMVVETFAEYPPLGRFAVRDMRQTVAVGVIKSVEKKDP 434
[Close]
BLAST of DR405244 vs. ExPASy Swiss-Prot
Match: EF1A_PEA (Elongation factor 1-alpha OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 4.332e-45
Identity = 86/91 (94.51%), Postives = 91/91 (100.00%), Query Frame = 1 
Query:    4 GYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDP 276
            GYAPVLDCHTSHIAVKF+EL+TKIDRRSGKE+EKEPKFLKNGDAGMVKMIPTKPMVVETF++YPPLGRFAVRDMRQTVAVGVIKSVEKKDP
Sbjct:  344 GYAPVLDCHTSHIAVKFAELITKIDRRSGKEIEKEPKFLKNGDAGMVKMIPTKPMVVETFAEYPPLGRFAVRDMRQTVAVGVIKSVEKKDP 434
[Close]
BLAST of DR405244 vs. ExPASy Swiss-Prot
Match: EF1A_SOYBN (Elongation factor 1-alpha OS=Glycine max GN=TEFS1 PE=3 SV=2)

HSP 1 Score: 178.718 bits (452), Expect = 1.646e-44
Identity = 86/91 (94.51%), Postives = 90/91 (98.90%), Query Frame = 1 
Query:    4 GYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDP 276
            GYAPVLDCHTSHIAVKF+EL+TKIDRRSGKELEKEPKFLKNGDAG VKMIPTKPMVVETFS+YPPLGRFAVRDMRQTVAVGVIK+VEKKDP
Sbjct:  344 GYAPVLDCHTSHIAVKFAELMTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNVEKKDP 434
[Close]
BLAST of DR405244 vs. ExPASy Swiss-Prot
Match: EF1A_ARATH (Elongation factor 1-alpha OS=Arabidopsis thaliana GN=A1 PE=1 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 2.150e-44
Identity = 85/91 (93.41%), Postives = 90/91 (98.90%), Query Frame = 1 
Query:    4 GYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDP 276
            GYAPVLDCHTSHIAVKFSE++TKIDRRSGKE+EKEPKFLKNGDAGMVKM PTKPMVVETFS+YPPLGRFAVRDMRQTVAVGVIKSV+KKDP
Sbjct:  344 GYAPVLDCHTSHIAVKFSEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDP 434
[Close]
BLAST of DR405244 vs. ExPASy Swiss-Prot
Match: EF1A_TOBAC (Elongation factor 1-alpha OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 2.808e-44
Identity = 84/91 (92.31%), Postives = 91/91 (100.00%), Query Frame = 1 
Query:    4 GYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDP 276
            GYAPVLDCHTSHIAVKF+E++TKIDRRSGKE+EKEPKFLKNGDAGMVKMIPTKPMVVETFS+YPPLGRFAVRDMRQTVAVGVIK+V+KKDP
Sbjct:  344 GYAPVLDCHTSHIAVKFAEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNVDKKDP 434
[Close]
BLAST of DR405244 vs. ExPASy Swiss-Prot
Match: EF1A_MANES (Elongation factor 1-alpha OS=Manihot esculenta GN=EF1 PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 3.668e-44
Identity = 86/91 (94.51%), Postives = 89/91 (97.80%), Query Frame = 1 
Query:    4 GYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDP 276
            GYAPVLDCHTSHIAVKF+E++TKIDRRSGKELEKEPKFLKNGDAG VKMIPTKPMVVETFS YPPLGRFAVRDMRQTVAVGVIKSVEKKDP
Sbjct:  344 GYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSAYPPLGRFAVRDMRQTVAVGVIKSVEKKDP 434
[Close]
BLAST of DR405244 vs. ExPASy Swiss-Prot
Match: EF1A_SOLLC (Elongation factor 1-alpha OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 4.790e-44
Identity = 83/91 (91.21%), Postives = 91/91 (100.00%), Query Frame = 1 
Query:    4 GYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDP 276
            GYAPVLDCHTSHIAVKF+E++TKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETF++YPPLGRFAVRDMRQTVAVGV+K+V+KKDP
Sbjct:  344 GYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFAEYPPLGRFAVRDMRQTVAVGVVKNVDKKDP 434
[Close]
BLAST of DR405244 vs. ExPASy Swiss-Prot
Match: EF1A2_DAUCA (Elongation factor 1-alpha OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 1.820e-43
Identity = 85/91 (93.41%), Postives = 87/91 (95.60%), Query Frame = 1 
Query:    4 GYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDP 276
            GYAPVLDCHTSHIAVKF+E+ TKIDRRSGKELEKEPKFLKNGDAG VKMIPTKPMVVETF  YPPLGRFAVRDMRQTVAVGVIKSVEKKDP
Sbjct:  344 GYAPVLDCHTSHIAVKFAEIQTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFMSYPPLGRFAVRDMRQTVAVGVIKSVEKKDP 434
The following BLAST results are available for this feature:
BLAST of DR405244 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 163
Match NameE-valueIdentityDescription
EF1A_ORYSJ1.945e-4596.70Elongation factor 1-alpha OS=Oryza sativa subsp. j... [more]
EF1A_MAIZE1.945e-4596.70Elongation factor 1-alpha OS=Zea mays GN=EF1A PE=3... [more]
EF1A_VICFA4.332e-4594.51Elongation factor 1-alpha OS=Vicia faba PE=2 SV=1[more]
EF1A_PEA4.332e-4594.51Elongation factor 1-alpha OS=Pisum sativum PE=2 SV... [more]
EF1A_SOYBN1.646e-4494.51Elongation factor 1-alpha OS=Glycine max GN=TEFS1 ... [more]
EF1A_ARATH2.150e-4493.41Elongation factor 1-alpha OS=Arabidopsis thaliana ... [more]
EF1A_TOBAC2.808e-4492.31Elongation factor 1-alpha OS=Nicotiana tabacum PE=... [more]
EF1A_MANES3.668e-4494.51Elongation factor 1-alpha OS=Manihot esculenta GN=... [more]
EF1A_SOLLC4.790e-4491.21Elongation factor 1-alpha OS=Solanum lycopersicum ... [more]
EF1A2_DAUCA1.820e-4393.41Elongation factor 1-alpha OS=Daucus carota PE=2 SV... [more]

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Properties
Property NameValue
Genbank descriptionCSAB-PNP1240N14 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone CSAB-PNP1240N14 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405244 ID=DR405244; Name=DR405244; organism=Citrus sinensis; type=EST; length=555bp
GGGGGATATGCCCCAGTGCTTGACTGCCACACCTCCCACATTGCTGTCAA
GTTTTCTGAGCTTGTGACCAAGATTGACAGGCGATCTGGCAAGGAGCTTG
AGAAGGAGCCCAAGTTCTTGAAGAATGGAGATGCCGGAATGGTTAAGATG
ATTCCCACCAAGCCCATGGTTGTTGAGACCTTCTCCGACTACCCACCCCT
TGGTCGTTTTGCTGTTAGGGACATGCGTCAGACTGTAGCTGTTGGTGTGA
TCAAGAGTGTTGAAAAGAAGGATCCATCGGGTGCCAAGGTCACCAAGTCT
GCTGCCAAGAAGAAGTGAGGAGTTTTTTGGGATCTATCTGCTATAGTTAG
CTTTTATTTTCTCTGTTTATGCTATTTTTGTCATGTTTTAGTTTGTTTTA
CGGTAGACTTCATTTTAATTCTCTGAATTTGGTTTTATATCATTGAGTTT
TTTTTGGTAAGTTGATAAACCAGTTTTTGGATGTCAAACATTTTGTTTCA
AGATTAGCCGTTAGTGCTCGATTTTGAAAAAAAAAAAAAAAAAAAAAAAA
AAAAA
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