DR405116

Overview
NameDR405116
Unique NameDR405116
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length408
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR405116 vs. ExPASy Swiss-Prot
Match: PSBI_WHEAT (Photosystem II reaction center protein I OS=Triticum aestivum GN=psbI PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.056e-12
Identity = 34/36 (94.44%), Postives = 34/36 (94.44%), Query Frame = 1
Query:   55 MLXLKLFVYTVVIFFVSLFIFGFLSNDSGRNPGREE 162
            ML LKLFVYTVVIFFVSLFIFGFLSND GRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36          
BLAST of DR405116 vs. ExPASy Swiss-Prot
Match: PSBI_VITVI (Photosystem II reaction center protein I OS=Vitis vinifera GN=psbI PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.056e-12
Identity = 34/36 (94.44%), Postives = 34/36 (94.44%), Query Frame = 1
Query:   55 MLXLKLFVYTVVIFFVSLFIFGFLSNDSGRNPGREE 162
            ML LKLFVYTVVIFFVSLFIFGFLSND GRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36          
BLAST of DR405116 vs. ExPASy Swiss-Prot
Match: PSBI_TOBAC (Photosystem II reaction center protein I OS=Nicotiana tabacum GN=psbI PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.056e-12
Identity = 34/36 (94.44%), Postives = 34/36 (94.44%), Query Frame = 1
Query:   55 MLXLKLFVYTVVIFFVSLFIFGFLSNDSGRNPGREE 162
            ML LKLFVYTVVIFFVSLFIFGFLSND GRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36          
BLAST of DR405116 vs. ExPASy Swiss-Prot
Match: PSBI_SPIOL (Photosystem II reaction center protein I OS=Spinacia oleracea GN=psbI PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.056e-12
Identity = 34/36 (94.44%), Postives = 34/36 (94.44%), Query Frame = 1
Query:   55 MLXLKLFVYTVVIFFVSLFIFGFLSNDSGRNPGREE 162
            ML LKLFVYTVVIFFVSLFIFGFLSND GRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36          
BLAST of DR405116 vs. ExPASy Swiss-Prot
Match: PSBI_SOYBN (Photosystem II reaction center protein I OS=Glycine max GN=psbI PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.056e-12
Identity = 34/36 (94.44%), Postives = 34/36 (94.44%), Query Frame = 1
Query:   55 MLXLKLFVYTVVIFFVSLFIFGFLSNDSGRNPGREE 162
            ML LKLFVYTVVIFFVSLFIFGFLSND GRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36          
BLAST of DR405116 vs. ExPASy Swiss-Prot
Match: PSBI_SORBI (Photosystem II reaction center protein I OS=Sorghum bicolor GN=psbI PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.056e-12
Identity = 34/36 (94.44%), Postives = 34/36 (94.44%), Query Frame = 1
Query:   55 MLXLKLFVYTVVIFFVSLFIFGFLSNDSGRNPGREE 162
            ML LKLFVYTVVIFFVSLFIFGFLSND GRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36          
BLAST of DR405116 vs. ExPASy Swiss-Prot
Match: PSBI_SOLTU (Photosystem II reaction center protein I OS=Solanum tuberosum GN=psbI PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.056e-12
Identity = 34/36 (94.44%), Postives = 34/36 (94.44%), Query Frame = 1
Query:   55 MLXLKLFVYTVVIFFVSLFIFGFLSNDSGRNPGREE 162
            ML LKLFVYTVVIFFVSLFIFGFLSND GRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36          
BLAST of DR405116 vs. ExPASy Swiss-Prot
Match: PSBI_SOLLC (Photosystem II reaction center protein I OS=Solanum lycopersicum GN=psbI PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.056e-12
Identity = 34/36 (94.44%), Postives = 34/36 (94.44%), Query Frame = 1
Query:   55 MLXLKLFVYTVVIFFVSLFIFGFLSNDSGRNPGREE 162
            ML LKLFVYTVVIFFVSLFIFGFLSND GRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36          
BLAST of DR405116 vs. ExPASy Swiss-Prot
Match: PSBI_SOLBU (Photosystem II reaction center protein I OS=Solanum bulbocastanum GN=psbI PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.056e-12
Identity = 34/36 (94.44%), Postives = 34/36 (94.44%), Query Frame = 1
Query:   55 MLXLKLFVYTVVIFFVSLFIFGFLSNDSGRNPGREE 162
            ML LKLFVYTVVIFFVSLFIFGFLSND GRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36          
BLAST of DR405116 vs. ExPASy Swiss-Prot
Match: PSBI_SINAL (Photosystem II reaction center protein I OS=Sinapis alba GN=psbI PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.056e-12
Identity = 34/36 (94.44%), Postives = 34/36 (94.44%), Query Frame = 1
Query:   55 MLXLKLFVYTVVIFFVSLFIFGFLSNDSGRNPGREE 162
            ML LKLFVYTVVIFFVSLFIFGFLSND GRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36          
The following BLAST results are available for this feature:
BLAST of DR405116 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
PSBI_WHEAT3.056e-1294.44Photosystem II reaction center protein I OS=Tritic... [more]
PSBI_VITVI3.056e-1294.44Photosystem II reaction center protein I OS=Vitis ... [more]
PSBI_TOBAC3.056e-1294.44Photosystem II reaction center protein I OS=Nicoti... [more]
PSBI_SPIOL3.056e-1294.44Photosystem II reaction center protein I OS=Spinac... [more]
PSBI_SOYBN3.056e-1294.44Photosystem II reaction center protein I OS=Glycin... [more]
PSBI_SORBI3.056e-1294.44Photosystem II reaction center protein I OS=Sorghu... [more]
PSBI_SOLTU3.056e-1294.44Photosystem II reaction center protein I OS=Solanu... [more]
PSBI_SOLLC3.056e-1294.44Photosystem II reaction center protein I OS=Solanu... [more]
PSBI_SOLBU3.056e-1294.44Photosystem II reaction center protein I OS=Solanu... [more]
PSBI_SINAL3.056e-1294.44Photosystem II reaction center protein I OS=Sinapi... [more]

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Properties
Property NameValue
Genbank descriptionCSAB-PNP1240G22 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone CSAB-PNP1240G22 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405116 ID=DR405116; Name=DR405116; organism=Citrus sinensis; type=EST; length=408bp
GGGGAATCTATTCTCTTTTCCCTTTTCCCAAAAACCTGATTTGGAGATTG
TGTNATGCTTNNNCTCAAACTCTTTGTTTACACCGTAGTGATATTCTTTG
TTTCGCTCTTCATCTTCGGATTCCTGTCTAATGATTCAGGGCGTAATCCC
GGACGCGAAGAATAAAAAAGGAAGGAGTTGCTTACTTTATTCGTATAAAC
GTTCTTAGGATTTTTTGATTCCCAGTTACTATTAAAAATAAAGTAAAAGT
GTTCGCTAAAGTTAAATTTGAAAAATACCAAGCCATCGCCCGAAACGGAA
AGAGAGGGATTCGAACCCTCGGTACGAAGAACTCGTACACCGGATTAGCA
ATCCGACGCTTTAATCCACTCAGCCATCTCTCCTAATTGAAAATAAAAAA
AAAAAAAA
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