FC922081
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC922081 vs. ExPASy Swiss-Prot
Match: PSB6_TOBAC (Proteasome subunit beta type-6 OS=Nicotiana tabacum PE=2 SV=1) HSP 1 Score: 171.4 bits (433), Expect = 1.264e-42 Identity = 82/89 (92.13%), Postives = 86/89 (96.63%), Query Frame = 1 Query: 1 VANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGV 267 VANRASDKITQLTDNVY+CRSGSAADSQ VSDYVRYFLHQHTIQLGQPATVKVAANL RLLSYNNK+ LQTGMI+GGWDKYEGGKIYG+ Sbjct: 39 VANRASDKITQLTDNVYVCRSGSAADSQIVSDYVRYFLHQHTIQLGQPATVKVAANLTRLLSYNNKDRLQTGMIIGGWDKYEGGKIYGI 127
BLAST of FC922081 vs. ExPASy Swiss-Prot
Match: PSB6_ARATH (Proteasome subunit beta type-6 OS=Arabidopsis thaliana GN=PBA1 PE=1 SV=2) HSP 1 Score: 170.629 bits (431), Expect = 2.157e-42 Identity = 80/91 (87.91%), Postives = 87/91 (95.60%), Query Frame = 1 Query: 1 VANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVXL 273 VANRASDKITQLTDNVY+CRSGSAADSQ VSDYVRYFLHQHTIQ GQPATVKV+ANL+R+L+YNNKN LQTG+IVGGWDKYEGGKIYG+ L Sbjct: 38 VANRASDKITQLTDNVYVCRSGSAADSQVVSDYVRYFLHQHTIQHGQPATVKVSANLIRMLAYNNKNMLQTGLIVGGWDKYEGGKIYGIPL 128
BLAST of FC922081 vs. ExPASy Swiss-Prot
Match: PSB6_DICDI (Proteasome subunit beta type-6 OS=Dictyostelium discoideum GN=psmB6 PE=1 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 2.028e-24 Identity = 49/91 (53.85%), Postives = 67/91 (73.63%), Query Frame = 1 Query: 1 VANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVXL 273 +ANR ++KIT + + +Y CRSGSAAD+Q +SDYVRY+L HT +L VK AA+L +LL Y+NKN L G+IV GWDK++GG +Y + L Sbjct: 40 IANRVTNKITPIHERIYCCRSGSAADTQAISDYVRYYLEMHTSELCDEPDVKTAASLFQLLCYSNKNNLMAGIIVAGWDKHQGGSVYNISL 130
BLAST of FC922081 vs. ExPASy Swiss-Prot
Match: PSB6_SCHPO (Probable proteasome subunit beta type-6 OS=Schizosaccharomyces pombe GN=SPBC4C3.10c PE=2 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 4.228e-22 Identity = 46/91 (50.55%), Postives = 64/91 (70.33%), Query Frame = 1 Query: 1 VANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVXL 273 +ANR +DK+TQLTDN++ CRSGSAAD+QTV+D ++Y+L + IQ G +V AA L + Y NKN L G+IV G+D+ GG +Y + L Sbjct: 50 IANRVTDKLTQLTDNIWCCRSGSAADTQTVADLLKYYLSMYRIQFGHDPSVHTAATLASEMCYQNKNMLSAGLIVAGYDEKTGGDVYSIPL 140
BLAST of FC922081 vs. ExPASy Swiss-Prot
Match: PSB6_RAT (Proteasome subunit beta type-6 OS=Rattus norvegicus GN=Psmb6 PE=1 SV=3) HSP 1 Score: 92.4337 bits (228), Expect = 7.464e-19 Identity = 41/91 (45.05%), Postives = 62/91 (68.13%), Query Frame = 1 Query: 1 VANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVXL 273 +ANR +DK+T + D+++ CRSGSAAD+Q V+D V Y L H+I+L +P V AA+L + + Y + L G+I+ GWD EGG++Y V + Sbjct: 59 IANRVTDKLTPIHDHIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYSVPM 149
BLAST of FC922081 vs. ExPASy Swiss-Prot
Match: PSB6_MOUSE (Proteasome subunit beta type-6 OS=Mus musculus GN=Psmb6 PE=1 SV=3) HSP 1 Score: 92.4337 bits (228), Expect = 7.464e-19 Identity = 41/91 (45.05%), Postives = 62/91 (68.13%), Query Frame = 1 Query: 1 VANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVXL 273 +ANR +DK+T + D+++ CRSGSAAD+Q V+D V Y L H+I+L +P V AA+L + + Y + L G+I+ GWD EGG++Y V + Sbjct: 59 IANRVTDKLTPIHDHIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYSVPM 149
BLAST of FC922081 vs. ExPASy Swiss-Prot
Match: PSB6_HUMAN (Proteasome subunit beta type-6 OS=Homo sapiens GN=PSMB6 PE=1 SV=4) HSP 1 Score: 92.0485 bits (227), Expect = 9.748e-19 Identity = 41/91 (45.05%), Postives = 61/91 (67.03%), Query Frame = 1 Query: 1 VANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVXL 273 +ANR +DK+T + D ++ CRSGSAAD+Q V+D V Y L H+I+L +P V AA+L + + Y + L G+I+ GWD EGG++Y V + Sbjct: 60 IANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYSVPM 150
BLAST of FC922081 vs. ExPASy Swiss-Prot
Match: PSB6_BOVIN (Proteasome subunit beta type-6 OS=Bos taurus GN=PSMB6 PE=1 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 9.748e-19 Identity = 41/91 (45.05%), Postives = 61/91 (67.03%), Query Frame = 1 Query: 1 VANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVXL 273 +ANR +DK+T + D ++ CRSGSAAD+Q V+D V Y L H+I+L +P V AA+L + + Y + L G+I+ GWD EGG++Y V + Sbjct: 60 IANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYSVPM 150
BLAST of FC922081 vs. ExPASy Swiss-Prot
Match: PSB6_YEAST (Proteasome component PRE3 OS=Saccharomyces cerevisiae GN=PRE3 PE=1 SV=2) HSP 1 Score: 84.7297 bits (208), Expect = 1.556e-16 Identity = 40/91 (43.96%), Postives = 63/91 (69.23%), Query Frame = 1 Query: 1 VANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVXL 273 +ANR +DK+T++ D ++ CRSGSAAD+Q ++D V+Y L +T Q G P+T + AA++ + L Y NK+ L G+IV G+D G++Y + L Sbjct: 45 IANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQYHLELYTSQYGTPST-ETAASVFKELCYENKDNLTAGIIVAGYDDKNKGEVYTIPL 134
BLAST of FC922081 vs. ExPASy Swiss-Prot
Match: PSB9_HUMAN (Proteasome subunit beta type-9 OS=Homo sapiens GN=PSMB9 PE=1 SV=2) HSP 1 Score: 83.5741 bits (205), Expect = 3.467e-16 Identity = 40/88 (45.45%), Postives = 56/88 (63.64%), Query Frame = 1 Query: 1 VANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYG 264 V NR DK++ L + +Y SGSAAD+Q V+D Y L H I+L +P V AAN+VR +SY + L ++V GWD+ EGG++YG Sbjct: 46 VVNRVFDKLSPLHERIYCALSGSAADAQAVADMAAYQLELHGIELEEPPLVLAAANVVRNISYKYREDLSAHLMVAGWDQREGGQVYG 133 The following BLAST results are available for this feature:
BLAST of FC922081 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 22
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC922081 ID=FC922081; Name=FC922081; organism=Citrus sinensis; type=EST; length=274bpback to top |