FC922081

Overview
NameFC922081
Unique NameFC922081
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length274
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC922081 vs. ExPASy Swiss-Prot
Match: PSB6_TOBAC (Proteasome subunit beta type-6 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.264e-42
Identity = 82/89 (92.13%), Postives = 86/89 (96.63%), Query Frame = 1
Query:    1 VANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGV 267
            VANRASDKITQLTDNVY+CRSGSAADSQ VSDYVRYFLHQHTIQLGQPATVKVAANL RLLSYNNK+ LQTGMI+GGWDKYEGGKIYG+
Sbjct:   39 VANRASDKITQLTDNVYVCRSGSAADSQIVSDYVRYFLHQHTIQLGQPATVKVAANLTRLLSYNNKDRLQTGMIIGGWDKYEGGKIYGI 127          
BLAST of FC922081 vs. ExPASy Swiss-Prot
Match: PSB6_ARATH (Proteasome subunit beta type-6 OS=Arabidopsis thaliana GN=PBA1 PE=1 SV=2)

HSP 1 Score: 170.629 bits (431), Expect = 2.157e-42
Identity = 80/91 (87.91%), Postives = 87/91 (95.60%), Query Frame = 1
Query:    1 VANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVXL 273
            VANRASDKITQLTDNVY+CRSGSAADSQ VSDYVRYFLHQHTIQ GQPATVKV+ANL+R+L+YNNKN LQTG+IVGGWDKYEGGKIYG+ L
Sbjct:   38 VANRASDKITQLTDNVYVCRSGSAADSQVVSDYVRYFLHQHTIQHGQPATVKVSANLIRMLAYNNKNMLQTGLIVGGWDKYEGGKIYGIPL 128          
BLAST of FC922081 vs. ExPASy Swiss-Prot
Match: PSB6_DICDI (Proteasome subunit beta type-6 OS=Dictyostelium discoideum GN=psmB6 PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.028e-24
Identity = 49/91 (53.85%), Postives = 67/91 (73.63%), Query Frame = 1
Query:    1 VANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVXL 273
            +ANR ++KIT + + +Y CRSGSAAD+Q +SDYVRY+L  HT +L     VK AA+L +LL Y+NKN L  G+IV GWDK++GG +Y + L
Sbjct:   40 IANRVTNKITPIHERIYCCRSGSAADTQAISDYVRYYLEMHTSELCDEPDVKTAASLFQLLCYSNKNNLMAGIIVAGWDKHQGGSVYNISL 130          
BLAST of FC922081 vs. ExPASy Swiss-Prot
Match: PSB6_SCHPO (Probable proteasome subunit beta type-6 OS=Schizosaccharomyces pombe GN=SPBC4C3.10c PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.228e-22
Identity = 46/91 (50.55%), Postives = 64/91 (70.33%), Query Frame = 1
Query:    1 VANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVXL 273
            +ANR +DK+TQLTDN++ CRSGSAAD+QTV+D ++Y+L  + IQ G   +V  AA L   + Y NKN L  G+IV G+D+  GG +Y + L
Sbjct:   50 IANRVTDKLTQLTDNIWCCRSGSAADTQTVADLLKYYLSMYRIQFGHDPSVHTAATLASEMCYQNKNMLSAGLIVAGYDEKTGGDVYSIPL 140          
BLAST of FC922081 vs. ExPASy Swiss-Prot
Match: PSB6_RAT (Proteasome subunit beta type-6 OS=Rattus norvegicus GN=Psmb6 PE=1 SV=3)

HSP 1 Score: 92.4337 bits (228), Expect = 7.464e-19
Identity = 41/91 (45.05%), Postives = 62/91 (68.13%), Query Frame = 1
Query:    1 VANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVXL 273
            +ANR +DK+T + D+++ CRSGSAAD+Q V+D V Y L  H+I+L +P  V  AA+L + + Y  +  L  G+I+ GWD  EGG++Y V +
Sbjct:   59 IANRVTDKLTPIHDHIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYSVPM 149          
BLAST of FC922081 vs. ExPASy Swiss-Prot
Match: PSB6_MOUSE (Proteasome subunit beta type-6 OS=Mus musculus GN=Psmb6 PE=1 SV=3)

HSP 1 Score: 92.4337 bits (228), Expect = 7.464e-19
Identity = 41/91 (45.05%), Postives = 62/91 (68.13%), Query Frame = 1
Query:    1 VANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVXL 273
            +ANR +DK+T + D+++ CRSGSAAD+Q V+D V Y L  H+I+L +P  V  AA+L + + Y  +  L  G+I+ GWD  EGG++Y V +
Sbjct:   59 IANRVTDKLTPIHDHIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYSVPM 149          
BLAST of FC922081 vs. ExPASy Swiss-Prot
Match: PSB6_HUMAN (Proteasome subunit beta type-6 OS=Homo sapiens GN=PSMB6 PE=1 SV=4)

HSP 1 Score: 92.0485 bits (227), Expect = 9.748e-19
Identity = 41/91 (45.05%), Postives = 61/91 (67.03%), Query Frame = 1
Query:    1 VANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVXL 273
            +ANR +DK+T + D ++ CRSGSAAD+Q V+D V Y L  H+I+L +P  V  AA+L + + Y  +  L  G+I+ GWD  EGG++Y V +
Sbjct:   60 IANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYSVPM 150          
BLAST of FC922081 vs. ExPASy Swiss-Prot
Match: PSB6_BOVIN (Proteasome subunit beta type-6 OS=Bos taurus GN=PSMB6 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.748e-19
Identity = 41/91 (45.05%), Postives = 61/91 (67.03%), Query Frame = 1
Query:    1 VANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVXL 273
            +ANR +DK+T + D ++ CRSGSAAD+Q V+D V Y L  H+I+L +P  V  AA+L + + Y  +  L  G+I+ GWD  EGG++Y V +
Sbjct:   60 IANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYSVPM 150          
BLAST of FC922081 vs. ExPASy Swiss-Prot
Match: PSB6_YEAST (Proteasome component PRE3 OS=Saccharomyces cerevisiae GN=PRE3 PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 1.556e-16
Identity = 40/91 (43.96%), Postives = 63/91 (69.23%), Query Frame = 1
Query:    1 VANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYGVXL 273
            +ANR +DK+T++ D ++ CRSGSAAD+Q ++D V+Y L  +T Q G P+T + AA++ + L Y NK+ L  G+IV G+D    G++Y + L
Sbjct:   45 IANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQYHLELYTSQYGTPST-ETAASVFKELCYENKDNLTAGIIVAGYDDKNKGEVYTIPL 134          
BLAST of FC922081 vs. ExPASy Swiss-Prot
Match: PSB9_HUMAN (Proteasome subunit beta type-9 OS=Homo sapiens GN=PSMB9 PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 3.467e-16
Identity = 40/88 (45.45%), Postives = 56/88 (63.64%), Query Frame = 1
Query:    1 VANRASDKITQLTDNVYLCRSGSAADSQTVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLQTGMIVGGWDKYEGGKIYG 264
            V NR  DK++ L + +Y   SGSAAD+Q V+D   Y L  H I+L +P  V  AAN+VR +SY  +  L   ++V GWD+ EGG++YG
Sbjct:   46 VVNRVFDKLSPLHERIYCALSGSAADAQAVADMAAYQLELHGIELEEPPLVLAAANVVRNISYKYREDLSAHLMVAGWDQREGGQVYG 133          
The following BLAST results are available for this feature:
BLAST of FC922081 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
PSB6_TOBAC1.264e-4292.13Proteasome subunit beta type-6 OS=Nicotiana tabacu... [more]
PSB6_ARATH2.157e-4287.91Proteasome subunit beta type-6 OS=Arabidopsis thal... [more]
PSB6_DICDI2.028e-2453.85Proteasome subunit beta type-6 OS=Dictyostelium di... [more]
PSB6_SCHPO4.228e-2250.55Probable proteasome subunit beta type-6 OS=Schizos... [more]
PSB6_RAT7.464e-1945.05Proteasome subunit beta type-6 OS=Rattus norvegicu... [more]
PSB6_MOUSE7.464e-1945.05Proteasome subunit beta type-6 OS=Mus musculus GN=... [more]
PSB6_HUMAN9.748e-1945.05Proteasome subunit beta type-6 OS=Homo sapiens GN=... [more]
PSB6_BOVIN9.748e-1945.05Proteasome subunit beta type-6 OS=Bos taurus GN=PS... [more]
PSB6_YEAST1.556e-1643.96Proteasome component PRE3 OS=Saccharomyces cerevis... [more]
PSB9_HUMAN3.467e-1645.45Proteasome subunit beta type-9 OS=Homo sapiens GN=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM1DC10RM1 SLH Citrus sinensis cDNA clone KN0AAM1DC10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC922081 ID=FC922081; Name=FC922081; organism=Citrus sinensis; type=EST; length=274bp
GTTGCTAACCGAGCTTCAGACAAGATTACGCAGCTCACTGATAATGTCTA
CCTTTGCCGCTCGGGATCGGCTGCAGATTCTCAGACTGTCTCCGACTATG
TTCGCTACTTCCTTCATCAACACACGATACAGCTAGGGCAGCCTGCAACT
GTTAAAGTTGCTGCCAATCTTGTCAGGCTGCTATCCTACAATAACAAGAA
CTTTTTGCAAACTGGAATGATTGTTGGCGGTTGGGATAAGTATGAAGGTG
GTAAAATATATGGAGTTCNTCTTG
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