DR405098

Overview
NameDR405098
Unique NameDR405098
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length619
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DR405098 vs. ExPASy Swiss-Prot
Match: RL23_ARATH (60S ribosomal protein L23 OS=Arabidopsis thaliana GN=RPL23A PE=2 SV=3)

HSP 1 Score: 267.314 bits (682), Expect = 4.328e-71
Identity = 132/140 (94.29%), Postives = 134/140 (95.71%), Query Frame = 3 
Query:   30 MSKRGRGXXAGIKFGMSLGLPVXXTVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 449
            MSKRGRG  +G KF MSLGLPV  TVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKV+PAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV
Sbjct:    1 MSKRGRGGTSGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 140
[Close]
BLAST of DR405098 vs. ExPASy Swiss-Prot
Match: RL23_TOBAC (60S ribosomal protein L23 OS=Nicotiana tabacum GN=RPL23 PE=2 SV=1)

HSP 1 Score: 265.774 bits (678), Expect = 1.259e-70
Identity = 131/140 (93.57%), Postives = 133/140 (95.00%), Query Frame = 3 
Query:   30 MSKRGRGXXAGIKFGMSLGLPVXXTVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 449
            MSKRGRG  AG KF MSLGLPV  T+NCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAV+VRQRKPWRRKDGVFMYFEDNAGVIVN KGEMKGSAITGPIGKECADLWPRIASAANAIV
Sbjct:    1 MSKRGRGGSAGNKFRMSLGLPVAATINCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVVVRQRKPWRRKDGVFMYFEDNAGVIVNAKGEMKGSAITGPIGKECADLWPRIASAANAIV 140
[Close]
BLAST of DR405098 vs. ExPASy Swiss-Prot
Match: RL23_TORRU (60S ribosomal protein L23 OS=Tortula ruralis GN=RPL23 PE=2 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 6.053e-65
Identity = 123/140 (87.86%), Postives = 128/140 (91.43%), Query Frame = 3 
Query:   30 MSKRGRGXXAGIKFGMSLGLPVXXTVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 449
            MSKRGRG  +G KF MSLGLPV   VNCADNTGAKNLY+IS  G++GRLNRLP+A VGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEM  SAITGPIGKECADLWPRIASAANAIV
Sbjct:    1 MSKRGRGGSSGNKFRMSLGLPVGAVVNCADNTGAKNLYVIS-SGVRGRLNRLPAAAVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMNPSAITGPIGKECADLWPRIASAANAIV 139
[Close]
BLAST of DR405098 vs. ExPASy Swiss-Prot
Match: RL23_DANRE (60S ribosomal protein L23 OS=Danio rerio GN=rpl23 PE=2 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 3.109e-61
Identity = 115/139 (82.73%), Postives = 125/139 (89.93%), Query Frame = 3 
Query:   30 MSKRGRGXXAGIKFGMSLGLPVXXTVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAI 446
            MSKRGRG  +G KF +SLGLPV   +NCADNTGAKNLYIISVKGIKGRLNRLPSA VGDMVMATVKKGKP+LRKKV PAV++RQRK +RRKDGVF+YFEDNAGVIVN KGEMKGSAITGP+ KECADLWPRIAS A +I
Sbjct:    1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPSAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSI 139
[Close]
BLAST of DR405098 vs. ExPASy Swiss-Prot
Match: RL23_RAT (60S ribosomal protein L23 OS=Rattus norvegicus GN=Rpl23 PE=2 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 6.926e-61
Identity = 114/139 (82.01%), Postives = 125/139 (89.93%), Query Frame = 3 
Query:   30 MSKRGRGXXAGIKFGMSLGLPVXXTVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAI 446
            MSKRGRG  +G KF +SLGLPV   +NCADNTGAKNLYIISVKGIKGRLNRLP+A VGDMVMATVKKGKP+LRKKV PAV++RQRK +RRKDGVF+YFEDNAGVIVN KGEMKGSAITGP+ KECADLWPRIAS A +I
Sbjct:    1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSI 139
[Close]
BLAST of DR405098 vs. ExPASy Swiss-Prot
Match: RL23_PIG (60S ribosomal protein L23 OS=Sus scrofa GN=RPL23 PE=2 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 6.926e-61
Identity = 114/139 (82.01%), Postives = 125/139 (89.93%), Query Frame = 3 
Query:   30 MSKRGRGXXAGIKFGMSLGLPVXXTVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAI 446
            MSKRGRG  +G KF +SLGLPV   +NCADNTGAKNLYIISVKGIKGRLNRLP+A VGDMVMATVKKGKP+LRKKV PAV++RQRK +RRKDGVF+YFEDNAGVIVN KGEMKGSAITGP+ KECADLWPRIAS A +I
Sbjct:    1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSI 139
[Close]
BLAST of DR405098 vs. ExPASy Swiss-Prot
Match: RL23_MOUSE (60S ribosomal protein L23 OS=Mus musculus GN=Rpl23 PE=2 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 6.926e-61
Identity = 114/139 (82.01%), Postives = 125/139 (89.93%), Query Frame = 3 
Query:   30 MSKRGRGXXAGIKFGMSLGLPVXXTVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAI 446
            MSKRGRG  +G KF +SLGLPV   +NCADNTGAKNLYIISVKGIKGRLNRLP+A VGDMVMATVKKGKP+LRKKV PAV++RQRK +RRKDGVF+YFEDNAGVIVN KGEMKGSAITGP+ KECADLWPRIAS A +I
Sbjct:    1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSI 139
[Close]
BLAST of DR405098 vs. ExPASy Swiss-Prot
Match: RL23_ICTPU (60S ribosomal protein L23 OS=Ictalurus punctatus GN=rpl23 PE=2 SV=2)

HSP 1 Score: 233.417 bits (594), Expect = 6.926e-61
Identity = 114/139 (82.01%), Postives = 125/139 (89.93%), Query Frame = 3 
Query:   30 MSKRGRGXXAGIKFGMSLGLPVXXTVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAI 446
            MSKRGRG  +G KF +SLGLPV   +NCADNTGAKNLYIISVKGIKGRLNRLP+A VGDMVMATVKKGKP+LRKKV PAV++RQRK +RRKDGVF+YFEDNAGVIVN KGEMKGSAITGP+ KECADLWPRIAS A +I
Sbjct:    1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSI 139
[Close]
BLAST of DR405098 vs. ExPASy Swiss-Prot
Match: RL23_HUMAN (60S ribosomal protein L23 OS=Homo sapiens GN=RPL23 PE=1 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 6.926e-61
Identity = 114/139 (82.01%), Postives = 125/139 (89.93%), Query Frame = 3 
Query:   30 MSKRGRGXXAGIKFGMSLGLPVXXTVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAI 446
            MSKRGRG  +G KF +SLGLPV   +NCADNTGAKNLYIISVKGIKGRLNRLP+A VGDMVMATVKKGKP+LRKKV PAV++RQRK +RRKDGVF+YFEDNAGVIVN KGEMKGSAITGP+ KECADLWPRIAS A +I
Sbjct:    1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSI 139
[Close]
BLAST of DR405098 vs. ExPASy Swiss-Prot
Match: RL23_BOVIN (60S ribosomal protein L23 OS=Bos taurus GN=RPL23 PE=2 SV=2)

HSP 1 Score: 233.417 bits (594), Expect = 6.926e-61
Identity = 114/139 (82.01%), Postives = 125/139 (89.93%), Query Frame = 3 
Query:   30 MSKRGRGXXAGIKFGMSLGLPVXXTVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAI 446
            MSKRGRG  +G KF +SLGLPV   +NCADNTGAKNLYIISVKGIKGRLNRLP+A VGDMVMATVKKGKP+LRKKV PAV++RQRK +RRKDGVF+YFEDNAGVIVN KGEMKGSAITGP+ KECADLWPRIAS A +I
Sbjct:    1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSI 139
The following BLAST results are available for this feature:
BLAST of DR405098 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 439
Match NameE-valueIdentityDescription
RL23_ARATH4.328e-7194.2960S ribosomal protein L23 OS=Arabidopsis thaliana ... [more]
RL23_TOBAC1.259e-7093.5760S ribosomal protein L23 OS=Nicotiana tabacum GN=... [more]
RL23_TORRU6.053e-6587.8660S ribosomal protein L23 OS=Tortula ruralis GN=RP... [more]
RL23_DANRE3.109e-6182.7360S ribosomal protein L23 OS=Danio rerio GN=rpl23 ... [more]
RL23_RAT6.926e-6182.0160S ribosomal protein L23 OS=Rattus norvegicus GN=... [more]
RL23_PIG6.926e-6182.0160S ribosomal protein L23 OS=Sus scrofa GN=RPL23 P... [more]
RL23_MOUSE6.926e-6182.0160S ribosomal protein L23 OS=Mus musculus GN=Rpl23... [more]
RL23_ICTPU6.926e-6182.0160S ribosomal protein L23 OS=Ictalurus punctatus G... [more]
RL23_HUMAN6.926e-6182.0160S ribosomal protein L23 OS=Homo sapiens GN=RPL23... [more]
RL23_BOVIN6.926e-6182.0160S ribosomal protein L23 OS=Bos taurus GN=RPL23 P... [more]

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Properties
Property NameValue
Genbank descriptionCSAB-PNP1240F22 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone CSAB-PNP1240F22 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405098 ID=DR405098; Name=DR405098; organism=Citrus sinensis; type=EST; length=619bp
GGGGATTGCTGTCACCTTCATCTGCGAAAATGTCGAAGCGAGGACGTGGA
GNNNNNGCAGGTATCAAGTTCGGGATGTCACTGGGTTTGCCAGTGGNNNC
AACTGTGAACTGTGCTGACAACACTGGGGCAAAGAACCTTTACATCATCT
CAGTTAAGGGAATCAAAGGTCGCCTCAACCGTTTGCCGTCTGCCTGTGTT
GGAGACATGGTTATGGCTACCGTGAAGAAAGGGAAGCCTGATCTTAGGAA
GAAGGTGATGCCCGCCGTCATTGTAAGGCAGCGCAAGCCATGGCGCAGAA
AGGATGGTGTCTTCATGTACTTTGAAGATAATGCTGGTGTTATTGTGAAT
CCAAAGGGAGAAATGAAGGGTTCTGCCATCACCGGTCCAATTGGTAAAGA
GTGTGCTGATTTGTGGCCGAGAATTGCAAGTGCAGCCAATGCTATCGTTT
AAGACGTTCAAGACCGATAACCTATATCATCCTTTTTGTTGCACTAAAAA
GAAATCTAGTGAAGTTTCATAGTAGGAAGGAGTAAAGCTTTTCTGTGAAC
TTTCTGTATGATTTTGTTATTCTAGTTTTGTAAGTGGTATGAAAGTTTGG
AGTTTTGTTGAAAAAAAAA
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