DR405029

Overview
NameDR405029
Unique NameDR405029
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length703
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DR405029 vs. ExPASy Swiss-Prot
Match: SYFM_ARATH (Phenylalanyl-tRNA synthetase, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=At3g58140 PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.553e-33
Identity = 69/125 (55.20%), Postives = 92/125 (73.60%), Query Frame = 2 
Query:  119 TTFFSKTCSLFIHTNSLKRFAFRVPFXXXXXXXXPLPLKKKWRPPAASALELGGVKMAKDDIVR-DDPTNNVPDTIFTKLGMQLHKRNQHPIGILKNAIYEYFDSNYPNKFNKFDDLCPIVSVKQ 490
            +T FS+     + +N  KRF+F   F        P   K+++  P  SA+++GGV +A++D+VR DDPTNNVPD+IF+KLGMQLH+R++HPIGILKNAIY+YFDSNY NKF KF+DL PIV+ KQ
Sbjct:    8 STIFSRASVALLSSNGFKRFSFVSSFSSSAAYSPPKMRKRRY--PIVSAVDIGGVAIARNDVVREDDPTNNVPDSIFSKLGMQLHRRDKHPIGILKNAIYDYFDSNYSNKFEKFEDLSPIVTTKQ 130
The following BLAST results are available for this feature:
BLAST of DR405029 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
SYFM_ARATH3.553e-3355.20Phenylalanyl-tRNA synthetase, chloroplastic/mitoch... [more]
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Properties
Property NameValue
Genbank descriptionCSAB-PNP1240C14 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone CSAB-PNP1240C14 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405029 ID=DR405029; Name=DR405029; organism=Citrus sinensis; type=EST; length=703bp
GGGGGCATTTTATACGAGGAAATAGATATTTGGAGCATTTTCCTATCTCT
CTCACTCCATACACAGTAACGAGACGAGACGGAGGGAGGGCATAGCGATG
CCTACTTCACTTGCAAACACCACTTTCTTCTCCAAAACTTGTTCACTCTT
TATTCACACGAATTCCCTCAAACGGTTTGCCTTTCGCGTACCCTTTTCTT
CAACTTCAACTTCAACTTCACCTCTTCCTCTTAAAAAGAAATGGAGACCC
CCTGCTGCTTCTGCGCTCGAGCTCGGTGGAGTCAAAATGGCCAAAGATGA
TATTGTGAGGGATGATCCTACGAACAATGTACCAGATACAATATTTACTA
AACTGGGAATGCAACTTCATAAGAGGAATCAGCACCCAATTGGGATTCTG
AAGAACGCTATTTATGAGTATTTTGATTCTAATTATCCCAACAAGTTTAA
TAAGTTTGATGATCTTTGTCCCATTGTTTCTGTAAAACAGGTATGTCTGT
AAATTTTAAACAAATAATTGTTACCTATGACGTGTTTAAATATTTTTCCT
CTTCTATCTCGTTTTGCTCACCTCAATGAGATATCTTTTTTATTTGAAAT
TTCATGAGATTGACAAAATGCCATCATTGTCCATGCATGTAAGCTTTGTT
GGTGCATTTTGTGATGGTAAATCTACTCCTTGCAGAACTTTGATGATGTT
TTG
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