FC922079

Overview
NameFC922079
Unique NameFC922079
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length719
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC922079 vs. ExPASy Swiss-Prot
Match: GIGAN_ARATH (Protein GIGANTEA OS=Arabidopsis thaliana GN=GI PE=1 SV=2)

HSP 1 Score: 389.423 bits (999), Expect = 1.007e-107
Identity = 200/238 (84.03%), Postives = 212/238 (89.08%), Query Frame = 2 
Query:    2 ESSGNGLGKGIASFLVDASDLANFLTMDRHIGFNCSAQFLLRSVLAEKQELCFSVVSLLWNKLIAAPETQPSAESTSAQQGWRQVVDALCNVVSASPTKAATAVVLQAERELQPWIAKDDDQGQKMWRINQRIVKLIVELMRIYDSPESLVILASASDLLLRATDGMLVDGEACTLPQLELLEPTARAIQPILRWGKSGLAIADGLSNLLKCRLPATIRCLSHPSAHVPALSTSVLRD 715
            E SG    KGI  FL+DASDLANFLT DR  GF C  Q LLRSVLAEK EL FSVVSLLW+KLIAAPE QP+AESTSAQQGWRQVVDALCNVVSA+P KAA AVVLQAERELQPWIAKDD++GQKMW+INQRIVK++VELMR +D PESLVILASASDLLLRATDGMLVDGEACTLPQLELLE TARAIQP+L WG SGLA+ DGLSNLLKCRLPATIRCLSHPSAHV ALSTSVLRD
Sbjct:  858 EGSGRPSEKGIKDFLLDASDLANFLTADRLAGFYCGTQKLLRSVLAEKPELSFSVVSLLWHKLIAAPEIQPTAESTSAQQGWRQVVDALCNVVSATPAKAAAAVVLQAERELQPWIAKDDEEGQKMWKINQRIVKVLVELMRNHDRPESLVILASASDLLLRATDGMLVDGEACTLPQLELLEATARAIQPVLAWGPSGLAVVDGLSNLLKCRLPATIRCLSHPSAHVRALSTSVLRD 1095
[Close]
BLAST of FC922079 vs. ExPASy Swiss-Prot
Match: GIGAN_ORYSJ (Protein GIGANTEA OS=Oryza sativa subsp. japonica GN=GI PE=2 SV=2)

HSP 1 Score: 361.303 bits (926), Expect = 2.935e-99
Identity = 185/231 (80.09%), Postives = 207/231 (89.61%), Query Frame = 2 
Query:   23 GKGIASFLVDASDLANFLTMDRHIGFNCSAQFLLRSVLAEKQELCFSVVSLLWNKLIAAPETQPSAESTSAQQGWRQVVDALCNVVSASPTKAATAVVLQAERELQPWIAKDDDQGQKMWRINQRIVKLIVELMRIYDSPESLVILASASDLLLRATDGMLVDGEACTLPQLELLEPTARAIQPILRWGKSGLAIADGLSNLLKCRLPATIRCLSHPSAHVPALSTSVLRD 715
            GK IAS  V+ASDLANFLTMDR+ G+  S Q LLRSVL+EKQELCFSVVSLLW KLIA+PE Q SAESTSA QGWR+VVDALC++VSASPTKA+ A+VLQAE++LQPWIA+DD+QGQKMWR+NQRIVKLI ELMR +DSPE+LVILASASDLLLRATDGMLVDGEACTLPQLELLE TARA+  I+ WG SG+++ADGLSNLLKCRL  TIRCLSHPSAHV ALS SVLRD
Sbjct:  857 GKAIASLQVEASDLANFLTMDRNGGYRGS-QTLLRSVLSEKQELCFSVVSLLWQKLIASPEMQMSAESTSAHQGWRKVVDALCDIVSASPTKASAAIVLQAEKDLQPWIARDDEQGQKMWRVNQRIVKLIAELMRNHDSPEALVILASASDLLLRATDGMLVDGEACTLPQLELLEVTARAVHLIVEWGDSGVSVADGLSNLLKCRLSTTIRCLSHPSAHVRALSMSVLRD 1086
The following BLAST results are available for this feature:
BLAST of FC922079 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
GIGAN_ARATH1.007e-10784.03Protein GIGANTEA OS=Arabidopsis thaliana GN=GI PE=... [more]
GIGAN_ORYSJ2.935e-9980.09Protein GIGANTEA OS=Oryza sativa subsp. japonica G... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAM1DC08RM1 SLH Citrus sinensis cDNA clone KN0AAM1DC08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC922079 ID=FC922079; Name=FC922079; organism=Citrus sinensis; type=EST; length=719bp
TGAAAGCTCAGGAAATGGTTTGGGTAAAGGCATTGCAAGTTTCCTAGTGG
ATGCTTCAGATTTAGCCAATTTCCTCACTATGGACAGGCATATAGGATTC
AATTGTAGTGCACAATTTCTTTTAAGATCAGTACTTGCAGAGAAACAAGA
ATTGTGCTTCTCTGTTGTTTCACTACTATGGAACAAGTTGATTGCAGCCC
CAGAAACCCAACCGAGTGCTGAAAGCACTTCTGCCCAACAAGGGTGGCGA
CAGGTGGTTGACGCACTGTGCAATGTTGTCTCGGCATCACCCACGAAAGC
GGCTACAGCTGTTGTTCTTCAGGCGGAAAGGGAATTGCAACCTTGGATAG
CCAAAGATGATGATCAGGGTCAGAAGATGTGGAGAATCAACCAGCGGATT
GTAAAACTTATTGTGGAGCTGATGAGAATTTATGACAGTCCAGAGTCACT
GGTAATATTGGCAAGCGCATCAGACCTGCTTCTACGTGCCACAGACGGGA
TGCTTGTTGATGGTGAAGCTTGCACACTGCCACAACTTGAGTTACTGGAA
CCAACAGCTAGAGCAATTCAGCCCATCCTGCGGTGGGGAAAGTCTGGATT
AGCAATTGCAGATGGTCTTTCAAACCTTTTAAAGTGTCGTCTACCTGCAA
CGATCCGATGCCTTTCTCATCCAAGTGCCCATGTCCCTGCACTGAGCACT
TCCGTTCTTCGTGACTTTT
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