EY728835

Overview
NameEY728835
Unique NameEY728835
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length802
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY728835 vs. ExPASy Swiss-Prot
Match: GADH1_PECCY (Gluconate 2-dehydrogenase flavoprotein OS=Pectobacterium cypripedii PE=1 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 5.363e-39
Identity = 79/175 (45.14%), Postives = 106/175 (60.57%), Query Frame = -3 
Query:    3 GPIYTHQTTSGVNLFFDESVNINPFMGAGAVAVTMDDFSADNFDHGPHGFVGGGYLQIQVVSGAPIGFHPTPKGTPGWGAEWKKAVKRYYNHAANITITGSAQPWRGGYLSLDPTYKDAWGLPLLRVTYDFPDNDIRMSAFLTERGDEIGRAM--KGVTQTEPGPRKRPFSATVY 521
            G  + +Q  S +   FD++   NPF+GAG   V +DDF+ADNFDHGP+GFVGG    +      P+   PTPKGTP WG++WK AV   YNH  ++   G+ Q +R  YL LDP YK+ +G PLLR+T+D+ DNDIRM+ F+  +  +I  AM  K +     GP    F  TVY
Sbjct:  365 GRNFAYQNISTLKALFDKNTTTNPFIGAGGAGVAVDDFNADNFDHGPYGFVGGSPFWVNQAGTKPVSGLPTPKGTPNWGSQWKAAVADTYNHHISMDAHGAHQSYRANYLDLDPNYKNVYGQPLLRMTFDWQDNDIRMAQFMVGKMRKITEAMNPKMIIGGAKGPGTH-FDTTVY 538
The following BLAST results are available for this feature:
BLAST of EY728835 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
GADH1_PECCY5.363e-3945.14Gluconate 2-dehydrogenase flavoprotein OS=Pectobac... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-704-009-C03-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728835 ID=EY728835; Name=EY728835; organism=Citrus sinensis; type=EST; length=802bp
TGGTACACCGTGGCCGAGAACGGCCGCTTGCGCGGTCCGGGCTCGGTCTG
GGTCACGCCCTTCATGGCGCGGCCGATCTCGTCGCCGCGCTCGGTCAGGA
ACGCCGACATGCGGATGTCGTTGTCGGGGAAGTCGTAGGTCACGCGCAGC
AGCGGCAGGCCCCAGGCGTCCTTATAGGTGGGATCCAGGCTGAGGTAGCC
GCCGCGCCAGGGCTGGGCCGAGCCGGTGATGGTGATGTTGGCGGCGTGGT
TGTAGTAGCGCTTGACCGCTTTCTTCCACTCGGCGCCCCAGCCCGGCGTG
CCCTTGGGCGTGGGGTGAAAGCCGATCGGCGCGCCGCTGACCACCTGGAT
CTGCAGGTAGCCGCCGCCGACGAAGCCGTGCGGGCCATGATCGAAGTTGT
CGGCGCTGAAGTCGTCCATGGTGACCGCCACGGCGCCGGCGCCCATGAAC
GGATTGATGTTCACGGATTCGTCGAAGAACAGGTTCACGCCGGAGGTGGT
CTGGTGCGTGTAGATGGGGCCCCCACGGGCGTGAGCGTCACGGTGTAGAT
GGCTGGCCGGTGCCGGACGGTATAGATTGGTTGCGGGGTTTGCATGCGCC
ATGGGGCTGCTGGCATGGCGGGGGGGGGTGGGCGTGCGCGTTGCGCGGTG
GTGCGTGGTATGGTCGGGGTGCGCTACGTGGGTGCGTGTGCCGCGCGTCG
CCCGAGTGGCGCCTGCCGTCAGTTGTGTGGCAGCACTAGTTAGTGTACGG
CATGACACTGCTCGCCAACCACCCATGGGAAGATGGGGGCGGTGTGGGTC
GG
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