EY679342

Overview
NameEY679342
Unique NameEY679342
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length903
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679342 vs. ExPASy Swiss-Prot
Match: PSAH2_ARATH (Photosystem I reaction center subunit VI-2, chloroplastic OS=Arabidopsis thaliana GN=PSAH2 PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 1.294e-50
Identity = 92/108 (85.19%), Postives = 99/108 (91.67%), Query Frame = 2
Query:    2 SLATIAAVQP-ATIKGLGGSSLAGTKLTVKPTRQSFRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETLAAPFTKRGLLLKFLIIG 322
            S ATIAAVQP A +KGLGGSSLAG KL +KP+RQSF+ KS +AGAVVAKYGDKSVYFDLEDLGNTTGQWD+YGSDAPSPYN LQSKFFET AAPFTKRGLLLKFLI+G
Sbjct:    3 SFATIAAVQPSAAVKGLGGSSLAGAKLFIKPSRQSFKTKSTRAGAVVAKYGDKSVYFDLEDLGNTTGQWDVYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILG 110          

HSP 2 Score: 36.5798 bits (83), Expect = 1.294e-50
Identity = 15/29 (51.72%), Postives = 20/29 (68.97%), Query Frame = 3
Query:  342 YFNATARGDILPITKGLSLPPKPGPRGMI 428
            Y +A + GD+LPI +G   PPK GPRG +
Sbjct:  117 YVSANSTGDVLPIKRGPQEPPKLGPRGKL 145          
BLAST of EY679342 vs. ExPASy Swiss-Prot
Match: PSAH_BRARA (Photosystem I reaction center subunit VI, chloroplastic OS=Brassica rapa GN=PSAH PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 2.865e-50
Identity = 92/108 (85.19%), Postives = 99/108 (91.67%), Query Frame = 2
Query:    2 SLATIAAVQP-ATIKGLGGSSLAGTKLTVKPTRQSFRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETLAAPFTKRGLLLKFLIIG 322
            S ATIAAVQP + +KGLGGSSL G KL +KP+RQSF+PKS +AGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYN LQSKFFET AAPFTKRGLLLKFLI+G
Sbjct:    3 SFATIAAVQPYSAVKGLGGSSLTGAKLFIKPSRQSFKPKSTRAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILG 110          

HSP 2 Score: 33.8834 bits (76), Expect = 2.865e-50
Identity = 14/29 (48.28%), Postives = 20/29 (68.97%), Query Frame = 3
Query:  342 YFNATARGDILPITKGLSLPPKPGPRGMI 428
            Y +A++ GD+LPI +G    PK GPRG +
Sbjct:  117 YVSASSTGDVLPIKRGPQEKPKLGPRGKL 145          
BLAST of EY679342 vs. ExPASy Swiss-Prot
Match: PSAH1_ARATH (Photosystem I reaction center subunit VI-1, chloroplastic OS=Arabidopsis thaliana GN=PSAH1 PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 2.865e-50
Identity = 90/108 (83.33%), Postives = 99/108 (91.67%), Query Frame = 2
Query:    2 SLATIAAVQP-ATIKGLGGSSLAGTKLTVKPTRQSFRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETLAAPFTKRGLLLKFLIIG 322
            SLAT+AAV+P A IKGLGGSSLAG KL++KP+R SF+PKS +A  VVAKYGDKSVYFDLEDLGNTTGQWD+YGSDAPSPYN LQSKFFET AAPFTKRGLLLKFLI+G
Sbjct:    3 SLATVAAVKPSAAIKGLGGSSLAGAKLSIKPSRLSFKPKSIRANGVVAKYGDKSVYFDLEDLGNTTGQWDVYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILG 110          

HSP 2 Score: 36.965 bits (84), Expect = 2.865e-50
Identity = 15/29 (51.72%), Postives = 21/29 (72.41%), Query Frame = 3
Query:  342 YFNATARGDILPITKGLSLPPKPGPRGMI 428
            Y +AT+ G++LPI +G   PPK GPRG +
Sbjct:  117 YVSATSTGEVLPIKRGPQEPPKLGPRGKL 145          
BLAST of EY679342 vs. ExPASy Swiss-Prot
Match: PSAH_SPIOL (Photosystem I reaction center subunit VI, chloroplastic OS=Spinacia oleracea GN=PSAH PE=1 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 2.865e-50
Identity = 86/107 (80.37%), Postives = 98/107 (91.59%), Query Frame = 2
Query:    2 SLATIAAVQPATIKGLGGSSLAGTKLTVKPTRQSFRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETLAAPFTKRGLLLKFLIIG 322
            SLAT+AAVQP T+KGL GSS+AGTKL +KP RQSF+  + ++GA+VAKYGDKSVYFDLED+ NTTGQWD+YGSDAPSPYNSLQSKFFET AAPFTKRGLLLKFLI+G
Sbjct:    3 SLATLAAVQPTTLKGLAGSSIAGTKLHIKPARQSFKLNNVRSGAIVAKYGDKSVYFDLEDIANTTGQWDVYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILG 109          

HSP 2 Score: 37.7354 bits (86), Expect = 2.865e-50
Identity = 17/29 (58.62%), Postives = 20/29 (68.97%), Query Frame = 3
Query:  342 YFNATARGDILPITKGLSLPPKPGPRGMI 428
            Y +A A  D+LPIT+G   PPK GPRG I
Sbjct:  116 YVSANAPQDVLPITRGPQQPPKLGPRGKI 144          
BLAST of EY679342 vs. ExPASy Swiss-Prot
Match: PSAH_ORYSJ (Photosystem I reaction center subunit VI, chloroplastic OS=Oryza sativa subsp. japonica GN=PSAH PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 2.992e-43
Identity = 76/111 (68.47%), Postives = 91/111 (81.98%), Query Frame = 2
Query:    5 LATIAAVQPATIKGLGGSSLAGTKLTVKPT-----RQSFRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETLAAPFTKRGLLLKFLIIG 322
            +A++ AVQP  +KGL GSS++G KL V+P+     R + RP++    AVVAKYG+KSVYFDLED+GNTTGQWDLYGSDAPSPYN LQSKFFET A PFTKRGLLLKFL++G
Sbjct:    1 MASLVAVQPVAVKGLAGSSISGRKLAVRPSPRALCRTTRRPRA----AVVAKYGEKSVYFDLEDIGNTTGQWDLYGSDAPSPYNPLQSKFFETFAGPFTKRGLLLKFLLLG 107          

HSP 2 Score: 42.3578 bits (98), Expect = 2.992e-43
Identity = 19/30 (63.33%), Postives = 22/30 (73.33%), Query Frame = 3
Query:  339 AYFNATARGDILPITKGLSLPPKPGPRGMI 428
            AY +A+A  D+LPI KG  LPP PGPRG I
Sbjct:  113 AYVSASASPDLLPIKKGPQLPPTPGPRGKI 142          
BLAST of EY679342 vs. ExPASy Swiss-Prot
Match: PSAH_ORYSI (Photosystem I reaction center subunit VI, chloroplastic OS=Oryza sativa subsp. indica GN=PSAH PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 2.992e-43
Identity = 76/111 (68.47%), Postives = 91/111 (81.98%), Query Frame = 2
Query:    5 LATIAAVQPATIKGLGGSSLAGTKLTVKPT-----RQSFRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETLAAPFTKRGLLLKFLIIG 322
            +A++ AVQP  +KGL GSS++G KL V+P+     R + RP++    AVVAKYG+KSVYFDLED+GNTTGQWDLYGSDAPSPYN LQSKFFET A PFTKRGLLLKFL++G
Sbjct:    1 MASLVAVQPVAVKGLAGSSISGRKLAVRPSPRALCRTTRRPRA----AVVAKYGEKSVYFDLEDIGNTTGQWDLYGSDAPSPYNPLQSKFFETFAGPFTKRGLLLKFLLLG 107          

HSP 2 Score: 42.3578 bits (98), Expect = 2.992e-43
Identity = 19/30 (63.33%), Postives = 22/30 (73.33%), Query Frame = 3
Query:  339 AYFNATARGDILPITKGLSLPPKPGPRGMI 428
            AY +A+A  D+LPI KG  LPP PGPRG I
Sbjct:  113 AYVSASASPDLLPIKKGPQLPPTPGPRGKI 142          
BLAST of EY679342 vs. ExPASy Swiss-Prot
Match: PSAH_HORVU (Photosystem I reaction center subunit VI, chloroplastic OS=Hordeum vulgare GN=PSAH PE=1 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 6.620e-43
Identity = 74/108 (68.52%), Postives = 89/108 (82.41%), Query Frame = 2
Query:    5 LATIAAVQPATIKGLGGSSLAGTKLTVKPTRQSFRPKSFKA--GAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETLAAPFTKRGLLLKFLIIG 322
            +A++ AVQPA +KGL GSS++G KL V+P+  +    + +A   AVVAKYG+KSVYFDL+D+ NTTGQWDLYGSDAPSPYN LQSKFF T AAPFTKRGLLLKFL+IG
Sbjct:    1 MASLVAVQPAAVKGLSGSSISGRKLAVRPSSAAVSRSTRRARGAAVVAKYGEKSVYFDLDDIANTTGQWDLYGSDAPSPYNGLQSKFFNTFAAPFTKRGLLLKFLLIG 108          

HSP 2 Score: 42.3578 bits (98), Expect = 6.620e-43
Identity = 19/30 (63.33%), Postives = 22/30 (73.33%), Query Frame = 3
Query:  339 AYFNATARGDILPITKGLSLPPKPGPRGMI 428
            AY +A+A  D+LPI KG  LPP PGPRG I
Sbjct:  114 AYVSASASPDLLPIKKGPQLPPTPGPRGKI 143          
BLAST of EY679342 vs. ExPASy Swiss-Prot
Match: PSAH_MAIZE (Photosystem I reaction center subunit VI, chloroplastic OS=Zea mays GN=PSAH PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 5.505e-42
Identity = 78/109 (71.56%), Postives = 92/109 (84.40%), Query Frame = 2
Query:    5 LATIAAV--QPATIKGLGGSSLAGTKLTV-KPTRQSFRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETLAAPFTKRGLLLKFLIIG 322
            +A++AAV  +P  IKGL GSS++G KL V +P+ +S R    +A AVVAKYGDKSVYFDL+D+GNTTGQWDLYGSDAPSPYN LQSKFFET AAPFTKRGLLLKFL++G
Sbjct:    1 MASLAAVSVKPVAIKGLAGSSISGRKLAVARPSARSIRRP--RAAAVVAKYGDKSVYFDLDDIGNTTGQWDLYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLLLG 107          

HSP 2 Score: 40.4318 bits (93), Expect = 5.505e-42
Identity = 18/30 (60.00%), Postives = 22/30 (73.33%), Query Frame = 3
Query:  339 AYFNATARGDILPITKGLSLPPKPGPRGMI 428
            AY +A+A  D+LPI KG   PP+PGPRG I
Sbjct:  113 AYVSASASPDLLPIKKGPQEPPQPGPRGKI 142          
BLAST of EY679342 vs. ExPASy Swiss-Prot
Match: PSAH_PEA (Photosystem I reaction center subunit VI (Fragment) OS=Pisum sativum GN=PSAH PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.614e-13
Identity = 33/36 (91.67%), Postives = 35/36 (97.22%), Query Frame = 2
Query:  143 KYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQ 250
            KYGDKSVYFDLED+GNTTGQWDLYGSDAPSPY+ LQ
Sbjct:    1 KYGDKSVYFDLEDIGNTTGQWDLYGSDAPSPYSXLQ 36          
The following BLAST results are available for this feature:
BLAST of EY679342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
PSAH2_ARATH1.294e-5085.19Photosystem I reaction center subunit VI-2, chloro... [more]
PSAH_BRARA2.865e-5085.19Photosystem I reaction center subunit VI, chloropl... [more]
PSAH1_ARATH2.865e-5083.33Photosystem I reaction center subunit VI-1, chloro... [more]
PSAH_SPIOL2.865e-5080.37Photosystem I reaction center subunit VI, chloropl... [more]
PSAH_ORYSJ2.992e-4368.47Photosystem I reaction center subunit VI, chloropl... [more]
PSAH_ORYSI2.992e-4368.47Photosystem I reaction center subunit VI, chloropl... [more]
PSAH_HORVU6.620e-4368.52Photosystem I reaction center subunit VI, chloropl... [more]
PSAH_MAIZE5.505e-4271.56Photosystem I reaction center subunit VI, chloropl... [more]
PSAH_PEA1.614e-1391.67Photosystem I reaction center subunit VI (Fragment... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-401-059-B05-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679342 ID=EY679342; Name=EY679342; organism=Citrus sinensis; type=EST; length=903bp
ATCTCTTGCAACCATAGCTGCTGTGCAACCAGCCACCATCAAAGGCCTTG
GAGGCAGCTCTCTTGCTGGAACTAAGCTCACCGTCAAGCCAACTCGCCAG
AGTTTCAGACCCAAAAGCTTCAAGGCTGGTGCTGTTGTGGCTAAGTATGG
TGATAAGAGTGTGTACTTTGATTTGGAGGATTTGGGCAACACTACGGGCC
AGTGGGACTTGTACGGATCAGATGCTCCTTCACCGTACAACTCTCTTCAG
AGCAAGTTCTTTGAGACATTAGCGGCTCCATTCACCAAGAGAGGATTATT
GCTCAAGTTCTTGATTATTGGGAGGAGGTTCAACCCTTGCTTACTTCAAT
GCTACAGCTAGAGGTGACATTCTCCCAATCACGAAGGGCCTCTCACTTCC
ACCAAAGCCCGGACCGCGTGGTATGATCTCAATTATTTTTCAATCCTCTT
ACTATTATACATTTCATTGAAAGTAACATCTCGGTATTGCATAATCTTTA
AGTCTGTCCTTTATCCTTACTTAAAACTTCCTTTGATATTAATGTATCAA
TATTTGCTTCATATTAATATCATATAAGTTCTTATTATATAATCTTTAAT
AATAATTATGTTGGTCGGCTTGGCTAAAAGATTCAACCTATAATACCGTC
TTGTGATCATAGTATATCTTCTTCCTTTAAATAAATTAAATAATCTATTA
AATATTCGCCCTTAATATCAGATTGTGATTGGAAAAAACATTAAATTGTC
TAAATTTTATCACATTGAGTAAATTTTTCACTTCTTTCTCCCGTTTTATA
TTACATTGATCGTCTTATATCTTTCTCTATTTTTGTTTGTTTATTATATG
GATTGTTATTATTTCGTTTGACATTTATATAACACTTTTTAAAACAAAGA
ACA
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