DR404728

Overview
NameDR404728
Unique NameDR404728
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length703
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR404728 vs. ExPASy Swiss-Prot
Match: DAPF_ARATH (Diaminopimelate epimerase, chloroplastic OS=Arabidopsis thaliana GN=DAPF PE=1 SV=1)

HSP 1 Score: 265.388 bits (677), Expect = 2.131e-70
Identity = 134/201 (66.67%), Postives = 150/201 (74.63%), Query Frame = 2
Query:  101 MAITTTRSLSVTPVTRRSATPINPXXXXXXXXXXXXXXXXNLTLKVPSFRVSASSMSSIHAPESASRTSFLDRRESGFLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPI 703
            M I    ++SV P +RR +   +                     K PS RVSA++       E  S  SFLD++E+G LHFVKYHGLGNDFILVDNR+S+EP+IT EQAAKLCDRNFG+GADGVIFAMPGVNGTDY MRIFNSDGSEPEMCGNGVRCFARFIAELENL GK SFT+HTGAGLIVPEIQDDG+VKVDMG PI
Sbjct:    1 MEIAAVSTVSVAPQSRRVSNAFS-RNLGSVSSLSFGFFEKEYCFKSPSLRVSAAASMDAVTAEKFSPASFLDKKETGVLHFVKYHGLGNDFILVDNRDSSEPKITQEQAAKLCDRNFGVGADGVIFAMPGVNGTDYAMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGKHSFTIHTGAGLIVPEIQDDGQVKVDMGTPI 200          
BLAST of DR404728 vs. ExPASy Swiss-Prot
Match: DAPF_ORYSJ (Putative diaminopimelate epimerase, chloroplastic OS=Oryza sativa subsp. japonica GN=DAPF PE=3 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 2.523e-63
Identity = 116/156 (74.36%), Postives = 134/156 (85.90%), Query Frame = 2
Query:  239 PSFRVSASSMSSIHAPESASRTSFLDRRESG-FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPI 703
            P+ R   ++M+ +  P SA+  +FL+RRES   LHFVKY GLGNDFI+VDNR+S  P++TPE+AAKLCDRNFG+GADGVIF MPGVNG DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENL G  SF +HTGAGLI+PEIQ+DGKVKVDMG+PI
Sbjct:   38 PTARRCVAAMA-VSTPRSAAAAAFLERRESERALHFVKYQGLGNDFIMVDNRDSAVPKVTPEEAAKLCDRNFGVGADGVIFVMPGVNGADYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGTHSFKIHTGAGLIIPEIQNDGKVKVDMGQPI 192          
BLAST of DR404728 vs. ExPASy Swiss-Prot
Match: DAPF_ORYSI (Putative diaminopimelate epimerase, chloroplastic OS=Oryza sativa subsp. indica GN=DAPF PE=3 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 5.621e-63
Identity = 115/156 (73.72%), Postives = 134/156 (85.90%), Query Frame = 2
Query:  239 PSFRVSASSMSSIHAPESASRTSFLDRRESG-FLHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPI 703
            P+ R   ++M+ +  P SA+  +FL+RRES   LHFVKY GLGNDFI++DNR+S  P++TPE+AAKLCDRNFG+GADGVIF MPGVNG DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENL G  SF +HTGAGLI+PEIQ+DGKVKVDMG+PI
Sbjct:   41 PTARRCVAAMA-VSTPRSAAAAAFLERRESERALHFVKYQGLGNDFIMMDNRDSAVPKVTPEEAAKLCDRNFGVGADGVIFVMPGVNGADYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGTHSFKIHTGAGLIIPEIQNDGKVKVDMGQPI 195          
BLAST of DR404728 vs. ExPASy Swiss-Prot
Match: DAPF_TRIEI (Diaminopimelate epimerase OS=Trichodesmium erythraeum (strain IMS101) GN=dapF PE=3 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.099e-50
Identity = 91/120 (75.83%), Postives = 105/120 (87.50%), Query Frame = 2
Query:  341 FVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEP 700
            F KYHGLGNDFIL+DNR+  +P +TPEQA +LCDRNFGIGADGVIFA+PGV  TDYTMRIFNSDGSEPEMCGNG+RC A+FIAELEN N K  + +HTGAG+IVPE+Q DG+V VDMG+P
Sbjct:    5 FTKYHGLGNDFILIDNRHQLQPILTPEQAIELCDRNFGIGADGVIFALPGVKQTDYTMRIFNSDGSEPEMCGNGIRCLAKFIAELEN-NNKTKYNIHTGAGIIVPELQGDGQVTVDMGQP 123          
BLAST of DR404728 vs. ExPASy Swiss-Prot
Match: DAPF_SYNY3 (Diaminopimelate epimerase OS=Synechocystis sp. (strain PCC 6803) GN=dapF PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.138e-47
Identity = 88/122 (72.13%), Postives = 105/122 (86.07%), Query Frame = 2
Query:  335 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEP 700
            L F KYHGLGNDFILVDNR STEP +TP+QA +LCDR+FGIGADGVIFA+PG  GTDYTMRIFNSDGSEPEMCGNG+RC A+F+A+LE +  K ++ +HT AG+I P++  DG+VKVDMGEP
Sbjct:    3 LSFSKYHGLGNDFILVDNRQSTEPCLTPDQAQQLCDRHFGIGADGVIFALPGQGGTDYTMRIFNSDGSEPEMCGNGIRCLAKFLADLEGVEEK-TYRIHTLAGVITPQLLADGQVKVDMGEP 123          
BLAST of DR404728 vs. ExPASy Swiss-Prot
Match: DAPF2_ANASP (Diaminopimelate epimerase 2 OS=Anabaena sp. (strain PCC 7120) GN=dapF2 PE=3 SV=2)

HSP 1 Score: 186.037 bits (471), Expect = 1.643e-46
Identity = 84/123 (68.29%), Postives = 103/123 (83.74%), Query Frame = 2
Query:  335 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLN-GKQSFTVHTGAGLIVPEIQDDGKVKVDMGEP 700
            + F KYHGLGNDFIL+DNR S  P ITPE+A ++CDR+FGIGADGVIFA+PG NGTDYTMRIFNSDGSEPEMCGNG+RC A F+A+LE L+  K ++ +HT AG+I P++  DG++KVDMG P
Sbjct:    3 IEFTKYHGLGNDFILIDNRASKTPAITPEKAVEMCDRHFGIGADGVIFALPGENGTDYTMRIFNSDGSEPEMCGNGIRCLAAFLADLEGLSRNKDTYRIHTLAGVITPQLTPDGQIKVDMGLP 125          
BLAST of DR404728 vs. ExPASy Swiss-Prot
Match: DAPF_NOSP7 (Diaminopimelate epimerase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=dapF PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.817e-45
Identity = 84/123 (68.29%), Postives = 102/123 (82.93%), Query Frame = 2
Query:  335 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLN-GKQSFTVHTGAGLIVPEIQDDGKVKVDMGEP 700
            + F KYHGLGNDFIL+DNR+S+ P +TPEQA +LCDR+FGIGADGVIFA+PG NGTDYTMRIFNSDGSEPEMCGNG+RC A F+A+LE  +  K S+ +HT  G++ P++  DG VKVDMG P
Sbjct:    3 IEFTKYHGLGNDFILIDNRSSSLPVLTPEQAIQLCDRHFGIGADGVIFALPGENGTDYTMRIFNSDGSEPEMCGNGIRCLAGFLADLEGQSRNKDSYRIHTLGGVMTPQLLSDGLVKVDMGLP 125          
BLAST of DR404728 vs. ExPASy Swiss-Prot
Match: DAPF_SYNP2 (Diaminopimelate epimerase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=dapF PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.426e-44
Identity = 84/124 (67.74%), Postives = 99/124 (79.84%), Query Frame = 2
Query:  335 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGK-QSFTVHTGAGLIVPEIQDDGKVKVDMGEPI 703
            L F KY GLGNDFIL+DNR  T P +TPEQA +LCDR+FGIGADGVIFA+PG  G DYTMRIFNSDGSEPEMCGNG+RC ARFI  LE  N   +++++HT AG+I P ++ D  V+VDMGEPI
Sbjct:    3 LEFTKYQGLGNDFILLDNRQQTTPLVTPEQAIQLCDRHFGIGADGVIFALPGQAGADYTMRIFNSDGSEPEMCGNGIRCLARFIDHLEGGNAPGKTYSIHTLAGMIRPRLETDALVRVDMGEPI 126          
BLAST of DR404728 vs. ExPASy Swiss-Prot
Match: DAPF_SYNP6 (Diaminopimelate epimerase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=dapF PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 7.632e-44
Identity = 84/121 (69.42%), Postives = 99/121 (81.82%), Query Frame = 2
Query:  335 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQS-FTVHTGAGLIVPEIQDDGKVKVDMG 694
            L F KYHGLGNDFILVDNR S EPR+TPEQA ++CDRNFG+GADGVIFA+PG   +DY MRIFNSDGSEPEMCGNG+RC A+F++EL+   G QS + + TGAGLIVP + + G V VDMG
Sbjct:    3 LQFAKYHGLGNDFILVDNRESGEPRLTPEQAVQVCDRNFGVGADGVIFALPGSGDSDYVMRIFNSDGSEPEMCGNGIRCLAKFLSELD--GGAQSRYRIATGAGLIVPTLTETGLVTVDMG 121          
BLAST of DR404728 vs. ExPASy Swiss-Prot
Match: DAPF_SYNE7 (Diaminopimelate epimerase OS=Synechococcus elongatus (strain PCC 7942) GN=dapF PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 7.632e-44
Identity = 84/121 (69.42%), Postives = 99/121 (81.82%), Query Frame = 2
Query:  335 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQS-FTVHTGAGLIVPEIQDDGKVKVDMG 694
            L F KYHGLGNDFILVDNR S EPR+TPEQA ++CDRNFG+GADGVIFA+PG   +DY MRIFNSDGSEPEMCGNG+RC A+F++EL+   G QS + + TGAGLIVP + + G V VDMG
Sbjct:    3 LQFAKYHGLGNDFILVDNRESGEPRLTPEQAVQVCDRNFGVGADGVIFALPGSGDSDYVMRIFNSDGSEPEMCGNGIRCLAKFLSELD--GGAQSRYRIATGAGLIVPTLTETGLVTVDMG 121          
The following BLAST results are available for this feature:
BLAST of DR404728 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 374
Match NameE-valueIdentityDescription
DAPF_ARATH2.131e-7066.67Diaminopimelate epimerase, chloroplastic OS=Arabid... [more]
DAPF_ORYSJ2.523e-6374.36Putative diaminopimelate epimerase, chloroplastic ... [more]
DAPF_ORYSI5.621e-6373.72Putative diaminopimelate epimerase, chloroplastic ... [more]
DAPF_TRIEI1.099e-5075.83Diaminopimelate epimerase OS=Trichodesmium erythra... [more]
DAPF_SYNY31.138e-4772.13Diaminopimelate epimerase OS=Synechocystis sp. (st... [more]
DAPF2_ANASP1.643e-4668.29Diaminopimelate epimerase 2 OS=Anabaena sp. (strai... [more]
DAPF_NOSP71.817e-4568.29Diaminopimelate epimerase OS=Nostoc punctiforme (s... [more]
DAPF_SYNP23.426e-4467.74Diaminopimelate epimerase OS=Synechococcus sp. (st... [more]
DAPF_SYNP67.632e-4469.42Diaminopimelate epimerase OS=Synechococcus sp. (st... [more]
DAPF_SYNE77.632e-4469.42Diaminopimelate epimerase OS=Synechococcus elongat... [more]

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Properties
Property NameValue
Genbank descriptionCSAA-PNP1239E01 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone CSAA-PNP1239E01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404728 ID=DR404728; Name=DR404728; organism=Citrus sinensis; type=EST; length=703bp
GGGGAACGGCACTGTATCACACAAACTAAACCAACCACCGCATTTGACAT
TACCGCGACCAAGAGCAGAAACAGAAAAGCCGTCAAAGCAAGCATCGAGC
ATGGCCATAACCACCACGCGCTCACTCTCCGTCACGCCCGTAACTCGCCG
CTCTGCCACTCCAATCAATCCTCTTCGATCCTCCTCTTTATCTTATTCGT
TGACTCGACAATTCAGTTCCAATTTGACTCTCAAAGTCCCTAGCTTCCGC
GTCTCGGCATCTTCTATGAGCAGCATTCACGCTCCGGAGAGCGCTTCGCG
AACCTCTTTTCTTGACCGCAGAGAGAGCGGCTTCCTTCATTTCGTCAAGT
ACCATGGCCTCGGCAACGACTTCATTTTGGTTGATAACAGGAATTCTACG
GAACCTAGGATAACTCCGGAGCAAGCGGCGAAGCTGTGTGATCGGAATTT
TGGCATTGGGGCCGATGGAGTGATCTTCGCCATGCCTGGAGTCAATGGCA
CTGATTATACAATGAGAATTTTCAATTCTGATGGTAGCGAGCCAGAGATG
TGTGGCAATGGAGTTCGATGCTTTGCCAGATTCATTGCTGAGCTTGAAAA
TTTAAATGGGAAGCAAAGTTTCACTGTCCACACTGGAGCTGGTCTCATTG
TTCCAGAAATTCAAGATGACGGGAAGGTCAAAGTGGATATGGGTGAACCA
ATA
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