DR404578

Overview
NameDR404578
Unique NameDR404578
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length732
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR404578 vs. ExPASy Swiss-Prot
Match: ARFR_ORYSJ (Auxin response factor 18 OS=Oryza sativa subsp. japonica GN=ARF18 PE=2 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 7.311e-53
Identity = 122/246 (49.59%), Postives = 164/246 (66.67%), Query Frame = 3
Query:    3 GARHAQFGISSSDFHVNNKLQSGLFLSGLQRFTPNS--RDSDGILTSHTNSSENLSCLLTMGNSNQNLEKSENIKKH-QFLLFGQPILTKQQISHSCSDDVVSQVLGKSSSDEHSDKV--KASSDGSGSIHEQRXXXXXXXXXXXXWNRSFQVTESGLDTGHCKVFLESEDVGRTLDLSVLSSYEELYRRLAIMFGIERSDMLSHVLYQDASGAIKRTGDEPFSDFMKSAKRLTILMGSGSDSVGR 725
            GARHAQFGIS SD H+N KLQS L   GL +       R + G++  H  + +++SCLLT+G S QN +KS+  K   Q +LFG+PILT+QQIS     D  S  + KSSSD +++    K++SD S     Q               +  +V + GL+TGHCKVF++SEDVGRTLDLSV+ SYEELYRRLA MFGIE+++++SHV Y+DA+GA+K TGDEPFS+F K+A+RL IL  +  D++ R
Sbjct:  460 GARHAQFGISLSDLHLN-KLQSSLSPHGLHQLDHGMQPRIAAGLIIGHPAARDDISCLLTIG-SPQNNKKSDGKKAPAQLMLFGKPILTEQQISLG---DAASVDVKKSSSDGNAENTVNKSNSDVSSPRSNQNGTTDNLSCGGVPLCQDNKVLDVGLETGHCKVFMQSEDVGRTLDLSVVGSYEELYRRLADMFGIEKAELMSHVFYRDAAGALKHTGDEPFSEFTKTARRLNILTDTSGDNLAR 700          
BLAST of DR404578 vs. ExPASy Swiss-Prot
Match: ARFV_ORYSJ (Auxin response factor 22 OS=Oryza sativa subsp. japonica GN=ARF22 PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.278e-46
Identity = 110/239 (46.03%), Postives = 154/239 (64.44%), Query Frame = 3
Query:    3 GARHAQFGISSSDFHVNNKLQSGLFLSG----LQRFTPNSRDSDGILTSHTNSSENLSCLLTMGNSNQNLEKSENIKKH-QFLLFGQPILTKQQISHSCSDDVVSQ-VLGKSSSDEHSDKVKASSDGSGSIHEQRXXXXXXXXXXXXWNRSFQVTESGLDTGHCKVFLESEDVGRTLDLSVLSSYEELYRRLAIMFGIERSDMLSHVLYQDASGAIKRTGDEPFSDFMKSAKRLTILMG 701
            GARHAQFG+  +D H  NKL  GL  SG    L   TP SR S G + S   + +N+SCLL++ ++ Q  EKS++ K     +LFG+ I T+QQI+ S S + +S  V G SS + ++ K   +SDGSGS                  ++  + ++ GL+ GHCKVF+ESEDVGRT+DLSV  SYEELY RLA MFGIE+ ++++H+ ++DA+G +K  G+ PFSDFMK+A+RLTI+ G
Sbjct:  456 GARHAQFGLPLTD-HQLNKLHLGLLHSGSFNRLDAITPPSRISKGFVVSSAPAHDNISCLLSI-STPQVAEKSDDRKTTPHIMLFGKAIFTEQQITSSGSTETLSPGVTGNSSPNGNAHKTGNASDGSGS-----------SICIGFSSQGHEASDLGLEAGHCKVFMESEDVGRTIDLSVFGSYEELYGRLADMFGIEKEEIINHLHFRDAAGVVKHPGEVPFSDFMKAARRLTIIAG 681          
BLAST of DR404578 vs. ExPASy Swiss-Prot
Match: ARFJ_ARATH (Auxin response factor 10 OS=Arabidopsis thaliana GN=ARF10 PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.633e-44
Identity = 121/264 (45.83%), Postives = 152/264 (57.58%), Query Frame = 3
Query:    3 GARHAQ--FGISS---------SDFHVNNKLQS-GLFLSGLQRFTPN-----SRDSDGILTSHTNSSENLSCLLTMGNSNQNLEKSENI---KKHQFLLFGQPILTKQQISHSCSDDVVSQVLGKSSSDEHSDKVKASSDGSGSIHEQRXXXXXXXXXXXXWNRSFQVTESGLDTGHCKVFLESEDVGRTLDLSVLSSYEELYRRLAIMFGIE-RSDMLSHVLYQDASGAIKRTGDEPFSDFMKSAKRLTILMGSGSDSVGRTW 731
            GAR AQ  FG  S         S +  NNKL S  +FLS    F P      +RDS+        +S N+SC LTMGN     +K +++   K HQF+LFGQPILT+QQ+ +        + L + +  E    + A                        WN S Q    GL+TGHCKVF+ESEDVGRTLDLSV+ SY+ELYR+LA MF IE RSD+L+HV+Y+DA+G IKR GDEPFSDFMK+ KRLTI M  G D+V +TW
Sbjct:  447 GARQAQQLFGSPSPSLLSDLNLSSYTGNNKLHSPAMFLSS---FNPRHHHYQARDSE--------NSNNISCSLTMGNPAMVQDKKKSVGSVKTHQFVLFGQPILTEQQVMNR------KRFLEEEAEAEEEKGLVARG--------------------LTWNYSLQ----GLETGHCKVFMESEDVGRTLDLSVIGSYQELYRKLAEMFHIEERSDLLTHVVYRDANGVIKRIGDEPFSDFMKATKRLTIKMDIGGDNVRKTW 669          
BLAST of DR404578 vs. ExPASy Swiss-Prot
Match: ARFH_ORYSJ (Auxin response factor 8 OS=Oryza sativa subsp. japonica GN=ARF8 PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.133e-37
Identity = 104/244 (42.62%), Postives = 147/244 (60.25%), Query Frame = 3
Query:    3 GARHAQFGISSSDFHVNNKLQSGLFLSGLQR---FTPNSRDSDGILTSHTNSSENLSCLLTMGNSNQNLEKSENIKKHQFLLFGQPILTKQQISHSCSDDVVSQVLGKSSSDEHSDKVKASSDGSGSIHEQRXXXXXXXXXXXXWNR-SFQVTESGLDTGHCKVFLESEDVGRTLDLSVLSSYEELYRRLAIMFGIERSDMLSHVLYQDASGAIKRTGDEPFSDFMKSAKRLTILMGSGSDSVG 722
            GARHAQFG S SD H+ + LQS L   GL+R     P S     I T  T  S   +  L+MG      +K ++ K    +LFGQ ILT++Q+S S +    +   G SS + +++K   +S+GSGS   Q             W R +  V+E GL+ G CKVF+ES+ VGR LDLS L+S+E+LY RL+ MF I+ +++ S VLY+ A+G ++  GDEPFS+F+K A+RLTIL  +GSD++G
Sbjct:  447 GARHAQFGPSLSDLHLTH-LQSSLMYPGLRRPDHVGPTSIPPPRISTDLTMGSSPPARALSMG-----AKKPDDAKPPGLMLFGQRILTERQMSLSGTTSPAAT--GNSSLNWNTEK--GASEGSGSGVIQNSPTDNTSSERLQWFRENSTVSELGLEPGQCKVFIESDTVGRNLDLSSLASFEQLYGRLSEMFCIDSAELRSRVLYRGATGEVRHAGDEPFSEFIKLARRLTILTDAGSDNLG 680          
BLAST of DR404578 vs. ExPASy Swiss-Prot
Match: ARFP_ARATH (Auxin response factor 16 OS=Arabidopsis thaliana GN=ARF16 PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.646e-36
Identity = 108/248 (43.55%), Postives = 142/248 (57.26%), Query Frame = 3
Query:    3 GARH---AQFGISSSDFH--VNNKLQSGLFLSGLQRFTPNSRDSDGILTSHTNSSENLSCLLTMGNSNQNLEKSENIKKHQFLLFGQPILTKQQISHSCSDDVVS----QVLGKSSSDEHSDKVKASSDGSGSIHEQRXXXXXXXXXXXXWNRSFQVTESGLDTGHCKVFLESEDVGRTLDLSVLSSYEELYRRLAIMFGIERSDMLSHVLYQDASGAIKRTGDEPFSDFMKSAKRLTILMGSGSDSV 719
            GARH     +G+SSSD H    N+       S LQ  +P    S G+    T + +   C LTMG +  N  KS   KK   +LFG+ IL ++Q+S   S D  +    Q+    S+       + SS   GS   ++                     SGL+TGHCKVF+ES+DVGRTLDLSVL SYEEL R+L+ MFGI++S+MLS VLY+DASGAIK  G+EPFS+F+K+A+RLTIL   GS+SV
Sbjct:  447 GARHNAHQYYGLSSSDLHHYYLNRPPPPPPPSSLQ-LSP----SLGLRNIDTKNEKGF-CFLTMGTTPCNDTKS---KKSHIVLFGKLILPEEQLSEKGSTDTANIEKTQISSGGSNQNGVAGREFSSSDEGSPCSKKVHDA-----------------SGLETGHCKVFMESDDVGRTLDLSVLGSYEELSRKLSDMFGIKKSEMLSSVLYRDASGAIKYAGNEPFSEFLKTARRLTILTEQGSESV 668          
BLAST of DR404578 vs. ExPASy Swiss-Prot
Match: ARFJ_ORYSJ (Auxin response factor 10 OS=Oryza sativa subsp. japonica GN=ARF10 PE=2 SV=3)

HSP 1 Score: 135.961 bits (341), Expect = 2.070e-31
Identity = 91/254 (35.83%), Postives = 133/254 (52.36%), Query Frame = 3
Query:    3 GARHAQFGISSSDFHVNN-----KLQSGLFLSGLQRFTPNSRD-----SDGILTSHTNSSENLSCLLTMGNSNQNLEKSENIKKHQFLLFGQPILTKQQISHSCSDDVVSQVLGKSSSDEHSDKVKASSDGSGSIHEQ----RXXXXXXXXXXXXWNRSFQVTESGLDTGHCKVFLESEDVGRTLDLSVLSSYEELYRRLAIMFGIERSDMLSHVLYQDASGAIKRTGDEPFSDFMKSAKRLTILMGSGSDSVG 722
            GARHAQF     +FH+ N      L +G+ L    R  P  R      S  +        ++ +C  + G      +K ++ K   FLLFGQ ILT++QI +  SD         +S +  ++K   +S+GS S   Q    +             N   + +E  L+ G CKVF+ESE VGR+LDLS LSS+EELY  L+ MF I   ++ SH++Y+  +G +K  GDEPF  F+KSA++L IL  +GSD++G
Sbjct:  456 GARHAQFASPFPEFHIGNLQPNLMLYAGIRLPPADRAAPAPRPPRIIISTDLTIGSPGKPDDAACSPSSGG-----KKIDDTKPRGFLLFGQAILTEEQIKNGNSDG------RPASPNWDAEKAPNTSEGSDSGVTQGSPTKNTTPSWSLPYFGGNNISRASEYELNPGQCKVFVESETVGRSLDLSALSSFEELYACLSDMFSIGSDELRSHLVYRSPAGEVKHAGDEPFCAFVKSARKLRILTDAGSDNLG 698          
BLAST of DR404578 vs. ExPASy Swiss-Prot
Match: ARFJ_ORYSI (Auxin responsive factor 10 OS=Oryza sativa subsp. indica GN=ARF10 PE=2 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 2.070e-31
Identity = 91/254 (35.83%), Postives = 133/254 (52.36%), Query Frame = 3
Query:    3 GARHAQFGISSSDFHVNN-----KLQSGLFLSGLQRFTPNSRD-----SDGILTSHTNSSENLSCLLTMGNSNQNLEKSENIKKHQFLLFGQPILTKQQISHSCSDDVVSQVLGKSSSDEHSDKVKASSDGSGSIHEQ----RXXXXXXXXXXXXWNRSFQVTESGLDTGHCKVFLESEDVGRTLDLSVLSSYEELYRRLAIMFGIERSDMLSHVLYQDASGAIKRTGDEPFSDFMKSAKRLTILMGSGSDSVG 722
            GARHAQF     +FH+ N      L +G+ L    R  P  R      S  +        ++ +C  + G      +K ++ K   FLLFGQ ILT++QI +  SD         +S +  ++K   +S+GS S   Q    +             N   + +E  L+ G CKVF+ESE VGR+LDLS LSS+EELY  L+ MF I   ++ SH++Y+  +G +K  GDEPF  F+KSA++L IL  +GSD++G
Sbjct:  456 GARHAQFASPFPEFHIGNLQPNLMLYAGIRLPPADRAAPAPRPPRIIISTDLTIGSPGKPDDAACSPSSGG-----KKIDDTKPRGFLLFGQAILTEEQIKNGNSDG------RPASPNWDAEKAPNTSEGSDSGVTQGSPTKNTTPSWSLPYFGGNNISRASEYELNPGQCKVFVESETVGRSLDLSALSSFEELYACLSDMFSIGSDELRSHLVYRSPAGEVKHAGDEPFCAFVKSARKLRILTDAGSDNLG 698          
The following BLAST results are available for this feature:
BLAST of DR404578 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
ARFR_ORYSJ7.311e-5349.59Auxin response factor 18 OS=Oryza sativa subsp. ja... [more]
ARFV_ORYSJ2.278e-4646.03Auxin response factor 22 OS=Oryza sativa subsp. ja... [more]
ARFJ_ARATH1.633e-4445.83Auxin response factor 10 OS=Arabidopsis thaliana G... [more]
ARFH_ORYSJ1.133e-3742.62Auxin response factor 8 OS=Oryza sativa subsp. jap... [more]
ARFP_ARATH3.646e-3643.55Auxin response factor 16 OS=Arabidopsis thaliana G... [more]
ARFJ_ORYSJ2.070e-3135.83Auxin response factor 10 OS=Oryza sativa subsp. ja... [more]
ARFJ_ORYSI2.070e-3135.83Auxin responsive factor 10 OS=Oryza sativa subsp. ... [more]
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Properties
Property NameValue
Genbank descriptionCSAE-PNP1243M13 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone CSAE-PNP1243M13 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404578 ID=DR404578; Name=DR404578; organism=Citrus sinensis; type=EST; length=732bp
GGGGAGCCAGGCATGCTCAATTTGGAATATCTTCATCAGATTTCCATGTT
AACAACAAACTGCAGTCAGGGCTGTTTCTATCCGGTTTGCAGCGGTTCAC
TCCAAATTCTAGAGATTCTGATGGCATCCTGACAAGCCACACAAACAGTA
GTGAGAATTTATCTTGCTTACTGACAATGGGGAATTCTAATCAGAATTTG
GAGAAATCTGAGAACATAAAAAAGCACCAGTTTTTACTCTTTGGTCAACC
AATACTCACAAAGCAACAGATCTCACACAGCTGTTCCGATGATGTAGTTT
CACAAGTGCTTGGGAAAAGTTCATCAGATGAGCATTCAGATAAAGTTAAA
GCATCTTCTGATGGTTCAGGATCTATTCATGAGCAGAGAATTTCAATAGA
AAAGTCCTCCAGTTCTGAATTTTTCTGGAATCGAAGTTTCCAAGTGACTG
AATCTGGTCTTGATACTGGTCATTGCAAGGTTTTCTTGGAGTCAGAGGAT
GTTGGGCGGACTCTGGACCTCTCAGTGCTGAGTTCTTATGAAGAGCTGTA
TCGAAGGCTGGCCATCATGTTTGGAATAGAAAGATCAGACATGTTAAGCC
ATGTGCTTTATCAAGATGCCTCTGGTGCTATTAAACGAACAGGAGATGAA
CCATTCAGTGATTTTATGAAATCAGCAAAAAGACTGACTATTTTGATGGG
TTCTGGCAGTGACAGTGTTGGAAGGACATGGA
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