DR404578
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DR404578 vs. ExPASy Swiss-Prot
Match: ARFR_ORYSJ (Auxin response factor 18 OS=Oryza sativa subsp. japonica GN=ARF18 PE=2 SV=1) HSP 1 Score: 207.223 bits (526), Expect = 7.311e-53 Identity = 122/246 (49.59%), Postives = 164/246 (66.67%), Query Frame = 3 Query: 3 GARHAQFGISSSDFHVNNKLQSGLFLSGLQRFTPNS--RDSDGILTSHTNSSENLSCLLTMGNSNQNLEKSENIKKH-QFLLFGQPILTKQQISHSCSDDVVSQVLGKSSSDEHSDKV--KASSDGSGSIHEQRXXXXXXXXXXXXWNRSFQVTESGLDTGHCKVFLESEDVGRTLDLSVLSSYEELYRRLAIMFGIERSDMLSHVLYQDASGAIKRTGDEPFSDFMKSAKRLTILMGSGSDSVGR 725 GARHAQFGIS SD H+N KLQS L GL + R + G++ H + +++SCLLT+G S QN +KS+ K Q +LFG+PILT+QQIS D S + KSSSD +++ K++SD S Q + +V + GL+TGHCKVF++SEDVGRTLDLSV+ SYEELYRRLA MFGIE+++++SHV Y+DA+GA+K TGDEPFS+F K+A+RL IL + D++ R Sbjct: 460 GARHAQFGISLSDLHLN-KLQSSLSPHGLHQLDHGMQPRIAAGLIIGHPAARDDISCLLTIG-SPQNNKKSDGKKAPAQLMLFGKPILTEQQISLG---DAASVDVKKSSSDGNAENTVNKSNSDVSSPRSNQNGTTDNLSCGGVPLCQDNKVLDVGLETGHCKVFMQSEDVGRTLDLSVVGSYEELYRRLADMFGIEKAELMSHVFYRDAAGALKHTGDEPFSEFTKTARRLNILTDTSGDNLAR 700
BLAST of DR404578 vs. ExPASy Swiss-Prot
Match: ARFV_ORYSJ (Auxin response factor 22 OS=Oryza sativa subsp. japonica GN=ARF22 PE=2 SV=1) HSP 1 Score: 185.652 bits (470), Expect = 2.278e-46 Identity = 110/239 (46.03%), Postives = 154/239 (64.44%), Query Frame = 3 Query: 3 GARHAQFGISSSDFHVNNKLQSGLFLSG----LQRFTPNSRDSDGILTSHTNSSENLSCLLTMGNSNQNLEKSENIKKH-QFLLFGQPILTKQQISHSCSDDVVSQ-VLGKSSSDEHSDKVKASSDGSGSIHEQRXXXXXXXXXXXXWNRSFQVTESGLDTGHCKVFLESEDVGRTLDLSVLSSYEELYRRLAIMFGIERSDMLSHVLYQDASGAIKRTGDEPFSDFMKSAKRLTILMG 701 GARHAQFG+ +D H NKL GL SG L TP SR S G + S + +N+SCLL++ ++ Q EKS++ K +LFG+ I T+QQI+ S S + +S V G SS + ++ K +SDGSGS ++ + ++ GL+ GHCKVF+ESEDVGRT+DLSV SYEELY RLA MFGIE+ ++++H+ ++DA+G +K G+ PFSDFMK+A+RLTI+ G Sbjct: 456 GARHAQFGLPLTD-HQLNKLHLGLLHSGSFNRLDAITPPSRISKGFVVSSAPAHDNISCLLSI-STPQVAEKSDDRKTTPHIMLFGKAIFTEQQITSSGSTETLSPGVTGNSSPNGNAHKTGNASDGSGS-----------SICIGFSSQGHEASDLGLEAGHCKVFMESEDVGRTIDLSVFGSYEELYGRLADMFGIEKEEIINHLHFRDAAGVVKHPGEVPFSDFMKAARRLTIIAG 681
BLAST of DR404578 vs. ExPASy Swiss-Prot
Match: ARFJ_ARATH (Auxin response factor 10 OS=Arabidopsis thaliana GN=ARF10 PE=2 SV=1) HSP 1 Score: 179.489 bits (454), Expect = 1.633e-44 Identity = 121/264 (45.83%), Postives = 152/264 (57.58%), Query Frame = 3 Query: 3 GARHAQ--FGISS---------SDFHVNNKLQS-GLFLSGLQRFTPN-----SRDSDGILTSHTNSSENLSCLLTMGNSNQNLEKSENI---KKHQFLLFGQPILTKQQISHSCSDDVVSQVLGKSSSDEHSDKVKASSDGSGSIHEQRXXXXXXXXXXXXWNRSFQVTESGLDTGHCKVFLESEDVGRTLDLSVLSSYEELYRRLAIMFGIE-RSDMLSHVLYQDASGAIKRTGDEPFSDFMKSAKRLTILMGSGSDSVGRTW 731 GAR AQ FG S S + NNKL S +FLS F P +RDS+ +S N+SC LTMGN +K +++ K HQF+LFGQPILT+QQ+ + + L + + E + A WN S Q GL+TGHCKVF+ESEDVGRTLDLSV+ SY+ELYR+LA MF IE RSD+L+HV+Y+DA+G IKR GDEPFSDFMK+ KRLTI M G D+V +TW Sbjct: 447 GARQAQQLFGSPSPSLLSDLNLSSYTGNNKLHSPAMFLSS---FNPRHHHYQARDSE--------NSNNISCSLTMGNPAMVQDKKKSVGSVKTHQFVLFGQPILTEQQVMNR------KRFLEEEAEAEEEKGLVARG--------------------LTWNYSLQ----GLETGHCKVFMESEDVGRTLDLSVIGSYQELYRKLAEMFHIEERSDLLTHVVYRDANGVIKRIGDEPFSDFMKATKRLTIKMDIGGDNVRKTW 669
BLAST of DR404578 vs. ExPASy Swiss-Prot
Match: ARFH_ORYSJ (Auxin response factor 8 OS=Oryza sativa subsp. japonica GN=ARF8 PE=2 SV=1) HSP 1 Score: 156.762 bits (395), Expect = 1.133e-37 Identity = 104/244 (42.62%), Postives = 147/244 (60.25%), Query Frame = 3 Query: 3 GARHAQFGISSSDFHVNNKLQSGLFLSGLQR---FTPNSRDSDGILTSHTNSSENLSCLLTMGNSNQNLEKSENIKKHQFLLFGQPILTKQQISHSCSDDVVSQVLGKSSSDEHSDKVKASSDGSGSIHEQRXXXXXXXXXXXXWNR-SFQVTESGLDTGHCKVFLESEDVGRTLDLSVLSSYEELYRRLAIMFGIERSDMLSHVLYQDASGAIKRTGDEPFSDFMKSAKRLTILMGSGSDSVG 722 GARHAQFG S SD H+ + LQS L GL+R P S I T T S + L+MG +K ++ K +LFGQ ILT++Q+S S + + G SS + +++K +S+GSGS Q W R + V+E GL+ G CKVF+ES+ VGR LDLS L+S+E+LY RL+ MF I+ +++ S VLY+ A+G ++ GDEPFS+F+K A+RLTIL +GSD++G Sbjct: 447 GARHAQFGPSLSDLHLTH-LQSSLMYPGLRRPDHVGPTSIPPPRISTDLTMGSSPPARALSMG-----AKKPDDAKPPGLMLFGQRILTERQMSLSGTTSPAAT--GNSSLNWNTEK--GASEGSGSGVIQNSPTDNTSSERLQWFRENSTVSELGLEPGQCKVFIESDTVGRNLDLSSLASFEQLYGRLSEMFCIDSAELRSRVLYRGATGEVRHAGDEPFSEFIKLARRLTILTDAGSDNLG 680
BLAST of DR404578 vs. ExPASy Swiss-Prot
Match: ARFP_ARATH (Auxin response factor 16 OS=Arabidopsis thaliana GN=ARF16 PE=2 SV=1) HSP 1 Score: 151.754 bits (382), Expect = 3.646e-36 Identity = 108/248 (43.55%), Postives = 142/248 (57.26%), Query Frame = 3 Query: 3 GARH---AQFGISSSDFH--VNNKLQSGLFLSGLQRFTPNSRDSDGILTSHTNSSENLSCLLTMGNSNQNLEKSENIKKHQFLLFGQPILTKQQISHSCSDDVVS----QVLGKSSSDEHSDKVKASSDGSGSIHEQRXXXXXXXXXXXXWNRSFQVTESGLDTGHCKVFLESEDVGRTLDLSVLSSYEELYRRLAIMFGIERSDMLSHVLYQDASGAIKRTGDEPFSDFMKSAKRLTILMGSGSDSV 719 GARH +G+SSSD H N+ S LQ +P S G+ T + + C LTMG + N KS KK +LFG+ IL ++Q+S S D + Q+ S+ + SS GS ++ SGL+TGHCKVF+ES+DVGRTLDLSVL SYEEL R+L+ MFGI++S+MLS VLY+DASGAIK G+EPFS+F+K+A+RLTIL GS+SV Sbjct: 447 GARHNAHQYYGLSSSDLHHYYLNRPPPPPPPSSLQ-LSP----SLGLRNIDTKNEKGF-CFLTMGTTPCNDTKS---KKSHIVLFGKLILPEEQLSEKGSTDTANIEKTQISSGGSNQNGVAGREFSSSDEGSPCSKKVHDA-----------------SGLETGHCKVFMESDDVGRTLDLSVLGSYEELSRKLSDMFGIKKSEMLSSVLYRDASGAIKYAGNEPFSEFLKTARRLTILTEQGSESV 668
BLAST of DR404578 vs. ExPASy Swiss-Prot
Match: ARFJ_ORYSJ (Auxin response factor 10 OS=Oryza sativa subsp. japonica GN=ARF10 PE=2 SV=3) HSP 1 Score: 135.961 bits (341), Expect = 2.070e-31 Identity = 91/254 (35.83%), Postives = 133/254 (52.36%), Query Frame = 3 Query: 3 GARHAQFGISSSDFHVNN-----KLQSGLFLSGLQRFTPNSRD-----SDGILTSHTNSSENLSCLLTMGNSNQNLEKSENIKKHQFLLFGQPILTKQQISHSCSDDVVSQVLGKSSSDEHSDKVKASSDGSGSIHEQ----RXXXXXXXXXXXXWNRSFQVTESGLDTGHCKVFLESEDVGRTLDLSVLSSYEELYRRLAIMFGIERSDMLSHVLYQDASGAIKRTGDEPFSDFMKSAKRLTILMGSGSDSVG 722 GARHAQF +FH+ N L +G+ L R P R S + ++ +C + G +K ++ K FLLFGQ ILT++QI + SD +S + ++K +S+GS S Q + N + +E L+ G CKVF+ESE VGR+LDLS LSS+EELY L+ MF I ++ SH++Y+ +G +K GDEPF F+KSA++L IL +GSD++G Sbjct: 456 GARHAQFASPFPEFHIGNLQPNLMLYAGIRLPPADRAAPAPRPPRIIISTDLTIGSPGKPDDAACSPSSGG-----KKIDDTKPRGFLLFGQAILTEEQIKNGNSDG------RPASPNWDAEKAPNTSEGSDSGVTQGSPTKNTTPSWSLPYFGGNNISRASEYELNPGQCKVFVESETVGRSLDLSALSSFEELYACLSDMFSIGSDELRSHLVYRSPAGEVKHAGDEPFCAFVKSARKLRILTDAGSDNLG 698
BLAST of DR404578 vs. ExPASy Swiss-Prot
Match: ARFJ_ORYSI (Auxin responsive factor 10 OS=Oryza sativa subsp. indica GN=ARF10 PE=2 SV=2) HSP 1 Score: 135.961 bits (341), Expect = 2.070e-31 Identity = 91/254 (35.83%), Postives = 133/254 (52.36%), Query Frame = 3 Query: 3 GARHAQFGISSSDFHVNN-----KLQSGLFLSGLQRFTPNSRD-----SDGILTSHTNSSENLSCLLTMGNSNQNLEKSENIKKHQFLLFGQPILTKQQISHSCSDDVVSQVLGKSSSDEHSDKVKASSDGSGSIHEQ----RXXXXXXXXXXXXWNRSFQVTESGLDTGHCKVFLESEDVGRTLDLSVLSSYEELYRRLAIMFGIERSDMLSHVLYQDASGAIKRTGDEPFSDFMKSAKRLTILMGSGSDSVG 722 GARHAQF +FH+ N L +G+ L R P R S + ++ +C + G +K ++ K FLLFGQ ILT++QI + SD +S + ++K +S+GS S Q + N + +E L+ G CKVF+ESE VGR+LDLS LSS+EELY L+ MF I ++ SH++Y+ +G +K GDEPF F+KSA++L IL +GSD++G Sbjct: 456 GARHAQFASPFPEFHIGNLQPNLMLYAGIRLPPADRAAPAPRPPRIIISTDLTIGSPGKPDDAACSPSSGG-----KKIDDTKPRGFLLFGQAILTEEQIKNGNSDG------RPASPNWDAEKAPNTSEGSDSGVTQGSPTKNTTPSWSLPYFGGNNISRASEYELNPGQCKVFVESETVGRSLDLSALSSFEELYACLSDMFSIGSDELRSHLVYRSPAGEVKHAGDEPFCAFVKSARKLRILTDAGSDNLG 698 The following BLAST results are available for this feature:
BLAST of DR404578 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 7
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >DR404578 ID=DR404578; Name=DR404578; organism=Citrus sinensis; type=EST; length=732bpback to top |