DR404568
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DR404568 vs. ExPASy Swiss-Prot
Match: RL3_ORYSJ (60S ribosomal protein L3 OS=Oryza sativa subsp. japonica GN=RPL3 PE=2 SV=2) HSP 1 Score: 165.236 bits (417), Expect = 1.882e-41 Identity = 78/86 (90.70%), Postives = 81/86 (94.19%), Query Frame = 2 Query: 38 MEIQVXXGTIAXKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTV 295 MEIQ+ GTIA KVDY Y FFEK+IPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVS+TV Sbjct: 182 MEIQINGGTIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTV 267 HSP 2 Score: 24.2534 bits (51), Expect = 1.882e-41 Identity = 10/11 (90.91%), Postives = 10/11 (90.91%), Query Frame = 1 Query: 4 MKGLKHKKAHL 36 MKGLK KKAHL Sbjct: 171 MKGLKQKKAHL 181
BLAST of DR404568 vs. ExPASy Swiss-Prot
Match: RL31_ARATH (60S ribosomal protein L3-1 OS=Arabidopsis thaliana GN=ARP1 PE=2 SV=5) HSP 1 Score: 165.236 bits (417), Expect = 3.195e-41 Identity = 77/86 (89.53%), Postives = 82/86 (95.35%), Query Frame = 2 Query: 38 MEIQVXXGTIAXKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTV 295 MEIQ+ GTIA KVD+AY FFEKQIP++AVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVS+TV Sbjct: 182 MEIQINGGTIAQKVDFAYSFFEKQIPIEAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTV 267 HSP 2 Score: 23.483 bits (49), Expect = 3.195e-41 Identity = 9/11 (81.82%), Postives = 10/11 (90.91%), Query Frame = 1 Query: 4 MKGLKHKKAHL 36 MKGLK KKAH+ Sbjct: 171 MKGLKQKKAHM 181
BLAST of DR404568 vs. ExPASy Swiss-Prot
Match: RL32_ARATH (60S ribosomal protein L3-2 OS=Arabidopsis thaliana GN=ARP2 PE=2 SV=4) HSP 1 Score: 157.918 bits (398), Expect = 2.204e-39 Identity = 74/85 (87.06%), Postives = 78/85 (91.76%), Query Frame = 2 Query: 41 EIQVXXGTIAXKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTV 295 EIQ+ G IA KVDYA FEKQ+PVDA+FQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVS+TV Sbjct: 183 EIQINGGDIAKKVDYACSLFEKQVPVDAIFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTV 267 HSP 2 Score: 24.6386 bits (52), Expect = 2.204e-39 Identity = 10/12 (83.33%), Postives = 11/12 (91.67%), Query Frame = 1 Query: 4 MKGLKHKKAHLD 39 MKGLK KKAHL+ Sbjct: 171 MKGLKQKKAHLN 182
BLAST of DR404568 vs. ExPASy Swiss-Prot
Match: RL3_TOXCA (60S ribosomal protein L3 OS=Toxocara canis GN=RPL3 PE=2 SV=2) HSP 1 Score: 132.88 bits (333), Expect = 5.043e-31 Identity = 60/86 (69.77%), Postives = 72/86 (83.72%), Query Frame = 2 Query: 38 MEIQVXXGTIAXKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTV 295 MEIQ+ GT+A KVD+A EKQ+PVD+VF +DEMID IGVTKGKG++GV +RW +LPRKTH+GLRKVACIGAWHP+RV FTV Sbjct: 181 MEIQINGGTVAEKVDWAREHLEKQVPVDSVFAQDEMIDCIGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTV 266
BLAST of DR404568 vs. ExPASy Swiss-Prot
Match: RL3_MOUSE (60S ribosomal protein L3 OS=Mus musculus GN=Rpl3 PE=2 SV=2) HSP 1 Score: 132.494 bits (332), Expect = 6.586e-31 Identity = 61/86 (70.93%), Postives = 73/86 (84.88%), Query Frame = 2 Query: 38 MEIQVXXGTIAXKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTV 295 MEIQV GT+A K+D+A E+Q+PV+ VF +DEMID+IGVTKGKGY+GV +RW +LPRKTHRGLRKVACIGAWHPARV+FTV Sbjct: 181 MEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFTV 266
BLAST of DR404568 vs. ExPASy Swiss-Prot
Match: RL3_RAT (60S ribosomal protein L3 OS=Rattus norvegicus GN=Rpl3 PE=1 SV=3) HSP 1 Score: 130.954 bits (328), Expect = 1.916e-30 Identity = 60/86 (69.77%), Postives = 73/86 (84.88%), Query Frame = 2 Query: 38 MEIQVXXGTIAXKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTV 295 MEIQV GT+A K+D+A E+Q+PV+ VF +DEMID+IGVTKGKGY+GV +RW +LPRKTHRGLRKVACIGAWHPARV+F+V Sbjct: 181 MEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSV 266
BLAST of DR404568 vs. ExPASy Swiss-Prot
Match: RL3_HUMAN (60S ribosomal protein L3 OS=Homo sapiens GN=RPL3 PE=1 SV=2) HSP 1 Score: 130.954 bits (328), Expect = 1.916e-30 Identity = 60/86 (69.77%), Postives = 73/86 (84.88%), Query Frame = 2 Query: 38 MEIQVXXGTIAXKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTV 295 MEIQV GT+A K+D+A E+Q+PV+ VF +DEMID+IGVTKGKGY+GV +RW +LPRKTHRGLRKVACIGAWHPARV+F+V Sbjct: 181 MEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSV 266
BLAST of DR404568 vs. ExPASy Swiss-Prot
Match: RL3_BOVIN (60S ribosomal protein L3 OS=Bos taurus GN=RPL3 PE=2 SV=2) HSP 1 Score: 130.183 bits (326), Expect = 3.269e-30 Identity = 59/86 (68.60%), Postives = 72/86 (83.72%), Query Frame = 2 Query: 38 MEIQVXXGTIAXKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTV 295 ME+QV GT+A K+D+A E+Q+PV VF +DEMID+IGVTKGKGY+GV +RW +LPRKTHRGLRKVACIGAWHPARV+F+V Sbjct: 181 MEVQVNGGTVAEKLDWARERLEQQVPVSQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSV 266
BLAST of DR404568 vs. ExPASy Swiss-Prot
Match: RL3_ASPFU (60S ribosomal protein L3 OS=Aspergillus fumigatus GN=rpl3 PE=1 SV=2) HSP 1 Score: 129.028 bits (323), Expect = 7.282e-30 Identity = 56/86 (65.12%), Postives = 71/86 (82.56%), Query Frame = 2 Query: 38 MEIQVXXGTIAXKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTV 295 MEIQV G++A KVD+A FEK I +D++F+KDEMID+I VTKG G++GV +RWG +LPRKTH+GLRKVACIGAWHP+ V +TV Sbjct: 180 MEIQVNGGSVADKVDFARNLFEKPIEIDSIFEKDEMIDVIAVTKGHGFQGVTSRWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTV 265
BLAST of DR404568 vs. ExPASy Swiss-Prot
Match: RL3_NEUCR (60S ribosomal protein L3 OS=Neurospora crassa GN=rpl-3 PE=3 SV=1) HSP 1 Score: 125.946 bits (315), Expect = 6.165e-29 Identity = 52/86 (60.47%), Postives = 70/86 (81.40%), Query Frame = 2 Query: 38 MEIQVXXGTIAXKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTV 295 MEIQ+ G++A KV++ +G FEK + +D++F+KDE+ID+I VTKG G+ GV RWG +LPRKTH+GLRKVACIGAWHP+ V +TV Sbjct: 180 MEIQINGGSVADKVEFGHGLFEKPVSIDSIFEKDEVIDVIAVTKGHGFTGVTARWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTV 265 The following BLAST results are available for this feature:
BLAST of DR404568 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 48
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Sequences
The
following sequences are available for this feature:
EST sequence >DR404568 ID=DR404568; Name=DR404568; organism=Citrus sinensis; type=EST; length=296bpback to top |