DR404568

Overview
NameDR404568
Unique NameDR404568
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length296
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR404568 vs. ExPASy Swiss-Prot
Match: RL3_ORYSJ (60S ribosomal protein L3 OS=Oryza sativa subsp. japonica GN=RPL3 PE=2 SV=2)

HSP 1 Score: 165.236 bits (417), Expect = 1.882e-41
Identity = 78/86 (90.70%), Postives = 81/86 (94.19%), Query Frame = 2
Query:   38 MEIQVXXGTIAXKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTV 295
            MEIQ+  GTIA KVDY Y FFEK+IPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVS+TV
Sbjct:  182 MEIQINGGTIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTV 267          

HSP 2 Score: 24.2534 bits (51), Expect = 1.882e-41
Identity = 10/11 (90.91%), Postives = 10/11 (90.91%), Query Frame = 1
Query:    4 MKGLKHKKAHL 36
            MKGLK KKAHL
Sbjct:  171 MKGLKQKKAHL 181          
BLAST of DR404568 vs. ExPASy Swiss-Prot
Match: RL31_ARATH (60S ribosomal protein L3-1 OS=Arabidopsis thaliana GN=ARP1 PE=2 SV=5)

HSP 1 Score: 165.236 bits (417), Expect = 3.195e-41
Identity = 77/86 (89.53%), Postives = 82/86 (95.35%), Query Frame = 2
Query:   38 MEIQVXXGTIAXKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTV 295
            MEIQ+  GTIA KVD+AY FFEKQIP++AVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVS+TV
Sbjct:  182 MEIQINGGTIAQKVDFAYSFFEKQIPIEAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTV 267          

HSP 2 Score: 23.483 bits (49), Expect = 3.195e-41
Identity = 9/11 (81.82%), Postives = 10/11 (90.91%), Query Frame = 1
Query:    4 MKGLKHKKAHL 36
            MKGLK KKAH+
Sbjct:  171 MKGLKQKKAHM 181          
BLAST of DR404568 vs. ExPASy Swiss-Prot
Match: RL32_ARATH (60S ribosomal protein L3-2 OS=Arabidopsis thaliana GN=ARP2 PE=2 SV=4)

HSP 1 Score: 157.918 bits (398), Expect = 2.204e-39
Identity = 74/85 (87.06%), Postives = 78/85 (91.76%), Query Frame = 2
Query:   41 EIQVXXGTIAXKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTV 295
            EIQ+  G IA KVDYA   FEKQ+PVDA+FQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVS+TV
Sbjct:  183 EIQINGGDIAKKVDYACSLFEKQVPVDAIFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTV 267          

HSP 2 Score: 24.6386 bits (52), Expect = 2.204e-39
Identity = 10/12 (83.33%), Postives = 11/12 (91.67%), Query Frame = 1
Query:    4 MKGLKHKKAHLD 39
            MKGLK KKAHL+
Sbjct:  171 MKGLKQKKAHLN 182          
BLAST of DR404568 vs. ExPASy Swiss-Prot
Match: RL3_TOXCA (60S ribosomal protein L3 OS=Toxocara canis GN=RPL3 PE=2 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 5.043e-31
Identity = 60/86 (69.77%), Postives = 72/86 (83.72%), Query Frame = 2
Query:   38 MEIQVXXGTIAXKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTV 295
            MEIQ+  GT+A KVD+A    EKQ+PVD+VF +DEMID IGVTKGKG++GV +RW   +LPRKTH+GLRKVACIGAWHP+RV FTV
Sbjct:  181 MEIQINGGTVAEKVDWAREHLEKQVPVDSVFAQDEMIDCIGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTV 266          
BLAST of DR404568 vs. ExPASy Swiss-Prot
Match: RL3_MOUSE (60S ribosomal protein L3 OS=Mus musculus GN=Rpl3 PE=2 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 6.586e-31
Identity = 61/86 (70.93%), Postives = 73/86 (84.88%), Query Frame = 2
Query:   38 MEIQVXXGTIAXKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTV 295
            MEIQV  GT+A K+D+A    E+Q+PV+ VF +DEMID+IGVTKGKGY+GV +RW   +LPRKTHRGLRKVACIGAWHPARV+FTV
Sbjct:  181 MEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFTV 266          
BLAST of DR404568 vs. ExPASy Swiss-Prot
Match: RL3_RAT (60S ribosomal protein L3 OS=Rattus norvegicus GN=Rpl3 PE=1 SV=3)

HSP 1 Score: 130.954 bits (328), Expect = 1.916e-30
Identity = 60/86 (69.77%), Postives = 73/86 (84.88%), Query Frame = 2
Query:   38 MEIQVXXGTIAXKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTV 295
            MEIQV  GT+A K+D+A    E+Q+PV+ VF +DEMID+IGVTKGKGY+GV +RW   +LPRKTHRGLRKVACIGAWHPARV+F+V
Sbjct:  181 MEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSV 266          
BLAST of DR404568 vs. ExPASy Swiss-Prot
Match: RL3_HUMAN (60S ribosomal protein L3 OS=Homo sapiens GN=RPL3 PE=1 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 1.916e-30
Identity = 60/86 (69.77%), Postives = 73/86 (84.88%), Query Frame = 2
Query:   38 MEIQVXXGTIAXKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTV 295
            MEIQV  GT+A K+D+A    E+Q+PV+ VF +DEMID+IGVTKGKGY+GV +RW   +LPRKTHRGLRKVACIGAWHPARV+F+V
Sbjct:  181 MEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSV 266          
BLAST of DR404568 vs. ExPASy Swiss-Prot
Match: RL3_BOVIN (60S ribosomal protein L3 OS=Bos taurus GN=RPL3 PE=2 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 3.269e-30
Identity = 59/86 (68.60%), Postives = 72/86 (83.72%), Query Frame = 2
Query:   38 MEIQVXXGTIAXKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTV 295
            ME+QV  GT+A K+D+A    E+Q+PV  VF +DEMID+IGVTKGKGY+GV +RW   +LPRKTHRGLRKVACIGAWHPARV+F+V
Sbjct:  181 MEVQVNGGTVAEKLDWARERLEQQVPVSQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSV 266          
BLAST of DR404568 vs. ExPASy Swiss-Prot
Match: RL3_ASPFU (60S ribosomal protein L3 OS=Aspergillus fumigatus GN=rpl3 PE=1 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 7.282e-30
Identity = 56/86 (65.12%), Postives = 71/86 (82.56%), Query Frame = 2
Query:   38 MEIQVXXGTIAXKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTV 295
            MEIQV  G++A KVD+A   FEK I +D++F+KDEMID+I VTKG G++GV +RWG  +LPRKTH+GLRKVACIGAWHP+ V +TV
Sbjct:  180 MEIQVNGGSVADKVDFARNLFEKPIEIDSIFEKDEMIDVIAVTKGHGFQGVTSRWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTV 265          
BLAST of DR404568 vs. ExPASy Swiss-Prot
Match: RL3_NEUCR (60S ribosomal protein L3 OS=Neurospora crassa GN=rpl-3 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 6.165e-29
Identity = 52/86 (60.47%), Postives = 70/86 (81.40%), Query Frame = 2
Query:   38 MEIQVXXGTIAXKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTV 295
            MEIQ+  G++A KV++ +G FEK + +D++F+KDE+ID+I VTKG G+ GV  RWG  +LPRKTH+GLRKVACIGAWHP+ V +TV
Sbjct:  180 MEIQINGGSVADKVEFGHGLFEKPVSIDSIFEKDEVIDVIAVTKGHGFTGVTARWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTV 265          
The following BLAST results are available for this feature:
BLAST of DR404568 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
RL3_ORYSJ1.882e-4190.7060S ribosomal protein L3 OS=Oryza sativa subsp. ja... [more]
RL31_ARATH3.195e-4189.5360S ribosomal protein L3-1 OS=Arabidopsis thaliana... [more]
RL32_ARATH2.204e-3987.0660S ribosomal protein L3-2 OS=Arabidopsis thaliana... [more]
RL3_TOXCA5.043e-3169.7760S ribosomal protein L3 OS=Toxocara canis GN=RPL3... [more]
RL3_MOUSE6.586e-3170.9360S ribosomal protein L3 OS=Mus musculus GN=Rpl3 P... [more]
RL3_RAT1.916e-3069.7760S ribosomal protein L3 OS=Rattus norvegicus GN=R... [more]
RL3_HUMAN1.916e-3069.7760S ribosomal protein L3 OS=Homo sapiens GN=RPL3 P... [more]
RL3_BOVIN3.269e-3068.6060S ribosomal protein L3 OS=Bos taurus GN=RPL3 PE=... [more]
RL3_ASPFU7.282e-3065.1260S ribosomal protein L3 OS=Aspergillus fumigatus ... [more]
RL3_NEUCR6.165e-2960.4760S ribosomal protein L3 OS=Neurospora crassa GN=r... [more]

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Properties
Property NameValue
Genbank descriptionCSAE-PNP1243M01 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone CSAE-PNP1243M01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404568 ID=DR404568; Name=DR404568; organism=Citrus sinensis; type=EST; length=296bp
GGGATGAAGGGTTTGAAGCATAAGAAGGCACACCTCGATGGAAATCCAGG
TCAANNNNGGCACCATTGCTNNAAAAGTTGACTATGCATATGGCTTCTTT
GAAAAGCAAATTCCTGTTGATGCTGTTTTCCAGAAGGATGAGATGATTGA
CATCATCGGTGTCACGAAAGGTAAAGGTTATGAAGGTGTTGTCACCCGTT
GGGGTGTTACCCGCCTTCCTCGCAAGACTCACAGAGGTCTGCGTAAGGTG
GCTTGTATTGGTGCCTGGCACCCTGCTAGGGTTTCCTTCACAGTTG
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