DR404550

Overview
NameDR404550
Unique NameDR404550
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length780
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR404550 vs. ExPASy Swiss-Prot
Match: ATPD_SPIOL (ATP synthase delta chain, chloroplastic OS=Spinacia oleracea GN=ATPD PE=1 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 1.109e-17
Identity = 47/139 (33.81%), Postives = 81/139 (58.27%), Query Frame = 3
Query:  324 ASGYAAALLDKALCLSSLEAVQRDVLKLSRLLKNEQIQAVCADPFVGDKDKGQIVKELLSSWKVNRYLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQLFHIAKRVQNLCGAAQVKIRNLI 740
            AS YA+AL D A    +LEA   DV KL R+   E +    A+P +   +K  ++ E++++  +  + A  + +LI+  ++ +V ++L EF+ +++ + GT V  V+S  K+E D L  IAK VQ + GA  V+I+ +I
Sbjct:   75 ASRYASALADVADVTGTLEATNSDVEKLIRIFSEEPVYYFFANPVISIDNKRSVLDEIITTSGLQPHTANFINILIDSERINLVKEILNEFEDVFNKITGTEVAVVTSVVKLENDHLAQIAKGVQKITGAKNVRIKTVI 213          
BLAST of DR404550 vs. ExPASy Swiss-Prot
Match: ATPD_TOBAC (ATP synthase delta chain, chloroplastic OS=Nicotiana tabacum GN=ATPD PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.502e-17
Identity = 44/139 (31.65%), Postives = 81/139 (58.27%), Query Frame = 3
Query:  324 ASGYAAALLDKALCLSSLEAVQRDVLKLSRLLKNEQIQAVCADPFVGDKDKGQIVKELLSSWKVNRYLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQLFHIAKRVQNLCGAAQVKIRNLI 740
            A  YA AL D A    +LE    D+ K+ ++  +E +      P VG++ K ++V E++SS  +  ++A  L +L++  +V ++ ++++EF+++Y+ L  T +  V+S  K+E   L  IAK VQ L G+  V+I+ +I
Sbjct:   66 AGSYANALADIAKSNGTLEQTTADLEKIEKISDDEAVFNFFVSPIVGEEKKRELVDEIVSSSSIQPHVANFLNILVDMKRVELIKEIVKEFEKVYNTLTDTELAVVTSVVKLESQHLAQIAKGVQRLTGSKNVRIKTVI 204          
BLAST of DR404550 vs. ExPASy Swiss-Prot
Match: ATPD_PEA (ATP synthase delta chain, chloroplastic OS=Pisum sativum GN=ATPD PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.355e-15
Identity = 45/139 (32.37%), Postives = 79/139 (56.83%), Query Frame = 3
Query:  324 ASGYAAALLDKALCLSSLEAVQRDVLKLSRLLKNEQIQAVCADPFVGDKDKGQIVKELLSSWKVNRYLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQLFHIAKRVQNLCGAAQVKIRNLI 740
            A  YAAAL D A   ++L+A+  D  K+ +L  + ++    + P V D  K Q++ E  ++     +    L +LI+  ++ M+ D+++EF+ +Y+ L  T +V V+S  K+E   L  IAK+VQ L GA +V+ + L+
Sbjct:   69 AGSYAAALADLANSNNTLDAITADFDKIEQLFSDPKVFDYFSSPIVEDSTKRQLIGEFATTSGFQPHTHNFLNVLIDSKRIDMIIDIIKEFEFVYNTLTDTELVVVTSVVKLESHHLAQIAKQVQKLTGAKKVRTKTLL 207          
BLAST of DR404550 vs. ExPASy Swiss-Prot
Match: ATPD_CHLRE (ATP synthase delta chain, chloroplastic OS=Chlamydomonas reinhardtii GN=ATPD PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.820e-13
Identity = 42/140 (30.00%), Postives = 82/140 (58.57%), Query Frame = 3
Query:  324 ASGYAAALLDKALCLSSLEAVQRDVLKLSRLLK-NEQIQAVCADPFVGDKDKGQIVKELLSSWKVNRYLAALLRMLIERNKVAMVSDVLEEFQRIYDDLIGTRVVFVSSAKKMEEDQLFHIAKRVQNLCGAAQVKIRNLI 740
            +  YA AL++ A     LEAV  DV  ++ L+K N ++ A+  +P V    K  ++ ++       +Y    L +L+E++++++V ++ E F+ +Y  +  T+V  + SA K+E++Q F IAK++Q L G+  +K++ +I
Sbjct:   39 SESYAKALVELADEKGKLEAVHADVDAVAGLMKENAKLSALIMNPVVESDKKRAVLAKIAKEAGFQQYTINWLNLLVEKDRLSLVPEICECFEDLYCQMTDTQVATLRSAVKLEQEQQFLIAKKLQELTGSKNIKLKPVI 178          
The following BLAST results are available for this feature:
BLAST of DR404550 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
ATPD_SPIOL1.109e-1733.81ATP synthase delta chain, chloroplastic OS=Spinaci... [more]
ATPD_TOBAC5.502e-1731.65ATP synthase delta chain, chloroplastic OS=Nicotia... [more]
ATPD_PEA1.355e-1532.37ATP synthase delta chain, chloroplastic OS=Pisum s... [more]
ATPD_CHLRE4.820e-1330.00ATP synthase delta chain, chloroplastic OS=Chlamyd... [more]
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Properties
Property NameValue
Genbank descriptionCSAE-PNP1243L04 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone CSAE-PNP1243L04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404550 ID=DR404550; Name=DR404550; organism=Citrus sinensis; type=EST; length=780bp
GGGGAAGGCCAACGGACAAAAGTTTGGTTTCTTCCATCCGCAATTTTGTA
TCCATGGATACTCTTTCAAGCTCGGTTTCCACCTTCAAATTTGCAGCTCT
TCACTCAACACCTCGAGAATTACATAACTTCAAAGCTCCTCCAAACACAT
CCCAATCTCATCATCAGTTTCATCCACACCAGTCCCACCTCAGCTCAACC
AGACCCAACAAAACTGCCGCTTCTTTCACTCGCAGGAGCTTCTCTAATAG
TTATCCATCGTTAATTTCCTCCTCCGGAACCTCAACTCCCAAGTCAGCTT
CCCCAAATAGCCATCAGAAACCTGCCAGCGGCTACGCTGCAGCCCTTCTA
GACAAAGCTCTATGCCTCAGTTCACTTGAAGCTGTCCAAAGGGATGTCCT
AAAGTTATCAAGGTTGCTCAAGAATGAGCAAATTCAAGCTGTCTGTGCTG
ACCCTTTTGTGGGTGATAAAGACAAGGGGCAAATAGTGAAGGAACTGTTG
AGTAGTTGGAAAGTTAATAGGTATTTGGCGGCTCTGCTGAGGATGCTGAT
TGAGAGAAATAAGGTGGCCATGGTGAGTGATGTTTTGGAGGAATTTCAGA
GGATCTATGACGACTTGATTGGGACTCGAGTTGTGTTTGTTTCGTCTGCA
AAGAAGATGGAGGAAGATCAACTCTTTCATATTGCTAAGAGAGTTCAAAA
CCTTTGTGGGGCTGCACAAGTCAAGATTAGAAATTTGATTCAAGGAGGGA
GTGCCATCCTATCCTTAATCATGTTCATTG
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