DR404408

Overview
NameDR404408
Unique NameDR404408
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length765
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR404408 vs. ExPASy Swiss-Prot
Match: RAC5_ARATH (Rac-like GTP-binding protein ARAC5 OS=Arabidopsis thaliana GN=ARAC5 PE=1 SV=1)

HSP 1 Score: 317.005 bits (811), Expect = 7.111e-86
Identity = 154/158 (97.47%), Postives = 156/158 (98.73%), Query Frame = 3
Query:  291 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIEC 764
            MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDG+TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITT QGEEL+KLIGSP YIEC
Sbjct:    1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTNQGEELKKLIGSPIYIEC 158          
BLAST of DR404408 vs. ExPASy Swiss-Prot
Match: RAC5_ORYSJ (Rac-like GTP-binding protein 5 OS=Oryza sativa subsp. japonica GN=RAC5 PE=2 SV=2)

HSP 1 Score: 315.464 bits (807), Expect = 2.069e-85
Identity = 152/158 (96.20%), Postives = 157/158 (99.37%), Query Frame = 3
Query:  291 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIEC 764
            MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF+LAFSLISKASYENV+KKWIPELRHYAPGVPIILVGTKLDLRDDKQFF+DHPGAVPI+TAQGEELRKLIG+ AYIEC
Sbjct:    1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVSKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFVDHPGAVPISTAQGEELRKLIGAAAYIEC 158          
BLAST of DR404408 vs. ExPASy Swiss-Prot
Match: RAC1_BETVU (Rac-like GTP-binding protein RHO1 OS=Beta vulgaris GN=RHO1 PE=2 SV=1)

HSP 1 Score: 315.464 bits (807), Expect = 2.069e-85
Identity = 151/158 (95.57%), Postives = 158/158 (100.00%), Query Frame = 3
Query:  291 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIEC 764
            MSASRFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVV+G+TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENV+KKWIPEL+HYAPGVPI+LVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIG+PAYIEC
Sbjct:    1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGAPAYIEC 158          
BLAST of DR404408 vs. ExPASy Swiss-Prot
Match: RAC1_LOTJA (Rac-like GTP-binding protein RAC1 OS=Lotus japonicus GN=RAC1 PE=2 SV=1)

HSP 1 Score: 314.694 bits (805), Expect = 3.529e-85
Identity = 152/158 (96.20%), Postives = 155/158 (98.10%), Query Frame = 3
Query:  291 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIEC 764
            MSASRFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYEN+AKKWIPELRHYAPGVPIILVGTKLDLRDDK F  DHPGAVPITTAQGEELRKLIG+PAYIEC
Sbjct:    1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENIAKKWIPELRHYAPGVPIILVGTKLDLRDDKHFLADHPGAVPITTAQGEELRKLIGAPAYIEC 158          
BLAST of DR404408 vs. ExPASy Swiss-Prot
Match: RHO1_PEA (Rac-like GTP-binding protein RHO1 OS=Pisum sativum GN=RHO1 PE=2 SV=1)

HSP 1 Score: 314.309 bits (804), Expect = 4.609e-85
Identity = 151/158 (95.57%), Postives = 157/158 (99.37%), Query Frame = 3
Query:  291 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIEC 764
            MSASRFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVV+GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENV+KKWIPEL+HYAPGVPIILVGTKLDLRDDKQFF+DHPGAVPITTAQGEELRKLI +PAYIEC
Sbjct:    1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFVDHPGAVPITTAQGEELRKLINAPAYIEC 158          
BLAST of DR404408 vs. ExPASy Swiss-Prot
Match: RAC1_ARATH (Rac-like GTP-binding protein ARAC1 OS=Arabidopsis thaliana GN=ARAC1 PE=2 SV=1)

HSP 1 Score: 314.309 bits (804), Expect = 4.609e-85
Identity = 150/158 (94.94%), Postives = 158/158 (100.00%), Query Frame = 3
Query:  291 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIEC 764
            MSASRFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVV+G+TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENV+KKWIPEL+HYAPGVPI+LVGTKLDLRDDKQFFIDHPGAVPITTAQGEEL+KLIG+PAYIEC
Sbjct:    1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTAQGEELKKLIGAPAYIEC 158          
BLAST of DR404408 vs. ExPASy Swiss-Prot
Match: RAC6_ORYSJ (Rac-like GTP-binding protein 6 OS=Oryza sativa subsp. japonica GN=RAC6 PE=2 SV=1)

HSP 1 Score: 313.153 bits (801), Expect = 1.027e-84
Identity = 150/158 (94.94%), Postives = 156/158 (98.73%), Query Frame = 3
Query:  291 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIEC 764
            MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDG+TVNLGLWDTAGQEDYNRLRPLSYRGADVF+LAFSLISKASYENV+KKWIPEL+HYAPGVPIILVGTKLDLRDDKQFF+DHPGAVPITTAQGEELRK IG+P YIEC
Sbjct:    1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFVDHPGAVPITTAQGEELRKQIGAPYYIEC 158          
BLAST of DR404408 vs. ExPASy Swiss-Prot
Match: RAC6_ARATH (Rac-like GTP-binding protein ARAC6 OS=Arabidopsis thaliana GN=ARAC6 PE=1 SV=2)

HSP 1 Score: 312.768 bits (800), Expect = 1.341e-84
Identity = 149/158 (94.30%), Postives = 157/158 (99.37%), Query Frame = 3
Query:  291 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIEC 764
            MSASRFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVV+G+TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENV+KKWIPEL+HYAPGVPI+LVGTKLDLRDDKQFFIDHPGAVPITT QGEEL+KLIG+PAYIEC
Sbjct:    1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIEC 158          
BLAST of DR404408 vs. ExPASy Swiss-Prot
Match: RAC11_ARATH (Rac-like GTP-binding protein ARAC11 OS=Arabidopsis thaliana GN=ARAC11 PE=1 SV=2)

HSP 1 Score: 312.383 bits (799), Expect = 1.751e-84
Identity = 149/158 (94.30%), Postives = 156/158 (98.73%), Query Frame = 3
Query:  291 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIEC 764
            MSASRF+KCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVV+GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENV+KKWIPEL+HYAPGVPI+LVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRK IG+P YIEC
Sbjct:    1 MSASRFVKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKQIGAPTYIEC 158          
BLAST of DR404408 vs. ExPASy Swiss-Prot
Match: RAC4_ARATH (Rac-like GTP-binding protein ARAC4 OS=Arabidopsis thaliana GN=ARAC4 PE=1 SV=1)

HSP 1 Score: 310.457 bits (794), Expect = 6.655e-84
Identity = 150/156 (96.15%), Postives = 153/156 (98.08%), Query Frame = 3
Query:  297 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGSPAYIEC 764
            ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDG+TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYEN+AKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITT QGEEL+KLIGS  YIEC
Sbjct:    2 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENIAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTNQGEELKKLIGSAVYIEC 157          
The following BLAST results are available for this feature:
BLAST of DR404408 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAC5_ARATH7.111e-8697.47Rac-like GTP-binding protein ARAC5 OS=Arabidopsis ... [more]
RAC5_ORYSJ2.069e-8596.20Rac-like GTP-binding protein 5 OS=Oryza sativa sub... [more]
RAC1_BETVU2.069e-8595.57Rac-like GTP-binding protein RHO1 OS=Beta vulgaris... [more]
RAC1_LOTJA3.529e-8596.20Rac-like GTP-binding protein RAC1 OS=Lotus japonic... [more]
RHO1_PEA4.609e-8595.57Rac-like GTP-binding protein RHO1 OS=Pisum sativum... [more]
RAC1_ARATH4.609e-8594.94Rac-like GTP-binding protein ARAC1 OS=Arabidopsis ... [more]
RAC6_ORYSJ1.027e-8494.94Rac-like GTP-binding protein 6 OS=Oryza sativa sub... [more]
RAC6_ARATH1.341e-8494.30Rac-like GTP-binding protein ARAC6 OS=Arabidopsis ... [more]
RAC11_ARATH1.751e-8494.30Rac-like GTP-binding protein ARAC11 OS=Arabidopsis... [more]
RAC4_ARATH6.655e-8496.15Rac-like GTP-binding protein ARAC4 OS=Arabidopsis ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCSAE-PNP1243D20 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone CSAE-PNP1243D20 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404408 ID=DR404408; Name=DR404408; organism=Citrus sinensis; type=EST; length=765bp
GGGGGCCATCCCTCGCTTTCTTTTTTTGGTTGGCATTGTTGCTTTCGCCG
CTGCTCTCTCTCTCTCTCTCTCTGTCTCTCTGCAGATTAGGGTTTAATTA
CCTTCGCTACCTTAATTCAAGACTTCTTTTCACTCAATTCCTGAGCTCCC
GTTGACGAACTGAGTTGTTCTCTTTTAGTCTTCGAAATGAGTGAAGTCTG
TGGCAAGAAGTGCACGTAAAGAACCTGAGCAGTCTTCCAAGGGCATTGTC
GGAATAAACTAAAAAAGAGAATAGAGATCTGGTGGCGCAAATGAGCGCGT
CGAGGTTCATAAAGTGCGTCACTGTCGGTGACGGCGCCGTCGGAAAAACT
TGCATGCTTATTTCTTACACCAGCAACACTTTCCCAACGGACTATGTGCC
AACTGTCTTTGACAATTTCAGTGCGAATGTGGTTGTTGATGGGAGTACGG
TCAACTTAGGGTTATGGGACACTGCTGGTCAGGAGGATTACAATAGATTG
AGACCGTTAAGTTATAGAGGAGCTGATGTGTTTATTCTTGCATTCTCACT
GATTAGCAAGGCCAGCTATGAAAATGTCGCCAAGAAGTGGATTCCAGAAC
TGAGGCACTATGCGCCTGGTGTTCCAATAATTCTTGTTGGGACTAAGCTA
GATCTTCGGGATGATAAGCAGTTCTTTATTGATCATCCAGGTGCAGTACC
AATTACTACAGCTCAGGGAGAGGAACTGAGGAAGCTGATTGGATCTCCTG
CATACATCGAATGTA
back to top