CX070246

Overview
NameCX070246
Unique NameCX070246
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length811
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX070246 vs. ExPASy Swiss-Prot
Match: E1310_ARATH (Glucan endo-1,3-beta-glucosidase 10 OS=Arabidopsis thaliana GN=At5g42100 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.472e-17
Identity = 38/46 (82.61%), Postives = 42/46 (91.30%), Query Frame = 2 
Query:    8 TPMRPNCDLNIYVFALFNENLKPGPTSERNYGLFKPDGSPAYSLGI 145
            TP+RP CDL I+VFALFNEN+KPGPTSERNYGLF PDG+P YSLGI
Sbjct:  303 TPIRPECDLTIFVFALFNENMKPGPTSERNYGLFNPDGTPVYSLGI 348
[Close]
BLAST of CX070246 vs. ExPASy Swiss-Prot
Match: E1311_ARATH (Glucan endo-1,3-beta-glucosidase 11 OS=Arabidopsis thaliana GN=At1g32860 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.010e-16
Identity = 39/45 (86.67%), Postives = 43/45 (95.56%), Query Frame = 2 
Query:    8 TPMRPNCDLNIYVFALFNENLKPGPTSERNYGLFKPDGSPAYSLG 142
            TP++PN DL+IYVFALFNENLKPGPTSERNYGLFKPDG+ AYSLG
Sbjct:  304 TPLKPNNDLSIYVFALFNENLKPGPTSERNYGLFKPDGTQAYSLG 348
[Close]
BLAST of CX070246 vs. ExPASy Swiss-Prot
Match: E1314_ARATH (Glucan endo-1,3-beta-glucosidase 14 OS=Arabidopsis thaliana GN=At2g27500/F10A12.18 PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.365e-13
Identity = 32/48 (66.67%), Postives = 40/48 (83.33%), Query Frame = 2 
Query:    2 KGTPMRPNCDLNIYVFALFNENLKPGPTSERNYGLFKPDGSPAYSLGI 145
            KGTP + +  +++YVFALFNENLKPGP SERNYGLF PDG P Y++G+
Sbjct:  301 KGTPAKQSVPIDVYVFALFNENLKPGPVSERNYGLFYPDGKPVYNVGM 348
The following BLAST results are available for this feature:
BLAST of CX070246 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
E1310_ARATH3.472e-1782.61Glucan endo-1,3-beta-glucosidase 10 OS=Arabidopsis... [more]
E1311_ARATH1.010e-1686.67Glucan endo-1,3-beta-glucosidase 11 OS=Arabidopsis... [more]
E1314_ARATH1.365e-1366.67Glucan endo-1,3-beta-glucosidase 14 OS=Arabidopsis... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_15F07_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-15F07-L13-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070246 ID=CX070246; Name=CX070246; organism=Citrus sinensis; type=EST; length=811bp
GAAAGGGACTCCCATGAGACCCAACTGTGATTTGAACATTTATGTGTTTG
CTTTGTTTAATGAAAATCTGAAGCCTGGACCTACTTCTGAGAGAAATTAC
GGGCTGTTTAAGCCGGATGGATCCCCGGCTTATTCACTTGGGATTAGTGC
GGTGACCGCCGCCAACACCACTGTCGCTTCCCCCACTCCCCCCGCCCTGC
CGGATACTTCCTCTGGTAACGATCCCGATTCTGGTTCCGGTTCCACTGGC
TATTTGTCCATCTCTTCTGCCACTAAGGCAAGATATGAGTTTGTTGGGTC
CGTGATGCTCGTGCTGGTGTTCTTTTTAATCAGTTTGCTTCTGTAGCTAG
GGATTGTAGAAAATTTGGAATCGGCATTCAACGTTAGGCATGATAATCAA
AATCAGCCGTTAAAAGTCCGTGAAACAATAAGAGACAGCTTTGGGGTTGG
GGAAAGGTGAAATTCCGTGCCTCTTTGCCTTTACGCAACTCAAATGTTTA
TGGCTTTTCCAAAAAAAAAACTCCTCTAATGTTTATGGGAATCATCATCC
TCTCGTCGATAAAGTAGCATCCCCAATATATAAATATATTCCCAATGAAC
CACCTACAGTTGATCTAATGCAAGTGGGTTCGTGATTGTCAAATACCTTG
ATCATCAGTCATCTCTTTTTTCAGGATGTGGGGCTTGTTAGTTGGTAGAG
CGTTTGATACTTAAATCTGTGTTACTTTTGCTCTTTCTAGTTGCCACTGA
CCCACAACTGCTTCATTTTTGCAGGGGTGTATATTTCAATAACTTAGATC
GTGCAATATGT
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