CX070224

Overview
NameCX070224
Unique NameCX070224
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length792
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX070224 vs. ExPASy Swiss-Prot
Match: CAND1_RAT (Cullin-associated NEDD8-dissociated protein 1 OS=Rattus norvegicus GN=Cand1 PE=1 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.687e-45
Identity = 95/204 (46.57%), Postives = 141/204 (69.12%), Query Frame = 2
Query:    2 KDQDRHVRRAAVLALSTFAHNKPNLIKGXXXXXXXXXYDQTIVKKELIRTVDLGPFKHTVDDGLELRKAAFECVDTLLDSCLDQVNPSSFIVPYLKSGLEDHYDVKMPCHLILSKLADKCPSAVLAVLDSLVDPLQKTINFKPKQDAVKQEVDRNEDMIRSALRAIASLNQISGGDCSMKFKSLMSEISKSPMLWEKFYTIRNE 613
            +D D +VRR A++  ++ AHNKP+LI+          Y++T V+KELIR V++GPFKHTVDDGL++RKAAFEC+ TLLDSCLD+++   F+  +++ GL+DHYD+KM   L+L +L+  CPSAVL  LD LV+PL+ T   K K ++VKQE ++ +++ RSA+RA+A+L  I   + S       S+IS +P L   F +I+ +
Sbjct: 1016 EDPDLNVRRVALVTFNSAAHNKPSLIRDLLDSVLPHLYNETKVRKELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLDRLDIFEFL-NHVEDGLKDHYDIKMLTFLMLVRLSTLCPSAVLQRLDRLVEPLRATCTTKVKANSVKQEFEKQDELKRSAMRAVAALLTIPEAEKSPLMSEFQSQISSNPELAAIFESIQKD 1218          
BLAST of CX070224 vs. ExPASy Swiss-Prot
Match: CAND1_PONAB (Cullin-associated NEDD8-dissociated protein 1 OS=Pongo abelii GN=CAND1 PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.687e-45
Identity = 95/204 (46.57%), Postives = 141/204 (69.12%), Query Frame = 2
Query:    2 KDQDRHVRRAAVLALSTFAHNKPNLIKGXXXXXXXXXYDQTIVKKELIRTVDLGPFKHTVDDGLELRKAAFECVDTLLDSCLDQVNPSSFIVPYLKSGLEDHYDVKMPCHLILSKLADKCPSAVLAVLDSLVDPLQKTINFKPKQDAVKQEVDRNEDMIRSALRAIASLNQISGGDCSMKFKSLMSEISKSPMLWEKFYTIRNE 613
            +D D +VRR A++  ++ AHNKP+LI+          Y++T V+KELIR V++GPFKHTVDDGL++RKAAFEC+ TLLDSCLD+++   F+  +++ GL+DHYD+KM   L+L +L+  CPSAVL  LD LV+PL+ T   K K ++VKQE ++ +++ RSA+RA+A+L  I   + S       S+IS +P L   F +I+ +
Sbjct: 1016 EDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLDRLDIFEFL-NHVEDGLKDHYDIKMLTFLMLVRLSTLCPSAVLQRLDRLVEPLRATCTTKVKANSVKQEFEKQDELKRSAMRAVAALLTIPEAEKSPLMSEFQSQISSNPELAAIFESIQKD 1218          
BLAST of CX070224 vs. ExPASy Swiss-Prot
Match: CAND1_MOUSE (Cullin-associated NEDD8-dissociated protein 1 OS=Mus musculus GN=Cand1 PE=2 SV=2)

HSP 1 Score: 182.956 bits (463), Expect = 1.687e-45
Identity = 95/204 (46.57%), Postives = 141/204 (69.12%), Query Frame = 2
Query:    2 KDQDRHVRRAAVLALSTFAHNKPNLIKGXXXXXXXXXYDQTIVKKELIRTVDLGPFKHTVDDGLELRKAAFECVDTLLDSCLDQVNPSSFIVPYLKSGLEDHYDVKMPCHLILSKLADKCPSAVLAVLDSLVDPLQKTINFKPKQDAVKQEVDRNEDMIRSALRAIASLNQISGGDCSMKFKSLMSEISKSPMLWEKFYTIRNE 613
            +D D +VRR A++  ++ AHNKP+LI+          Y++T V+KELIR V++GPFKHTVDDGL++RKAAFEC+ TLLDSCLD+++   F+  +++ GL+DHYD+KM   L+L +L+  CPSAVL  LD LV+PL+ T   K K ++VKQE ++ +++ RSA+RA+A+L  I   + S       S+IS +P L   F +I+ +
Sbjct: 1016 EDPDLNVRRVALVTFNSAAHNKPSLIRDLLDSVLPHLYNETKVRKELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLDRLDIFEFL-NHVEDGLKDHYDIKMLTFLMLVRLSTLCPSAVLQRLDRLVEPLRATCTTKVKANSVKQEFEKQDELKRSAMRAVAALLTIPEAEKSPLMSEFQSQISSNPELAAIFESIQKD 1218          
BLAST of CX070224 vs. ExPASy Swiss-Prot
Match: CAND1_HUMAN (Cullin-associated NEDD8-dissociated protein 1 OS=Homo sapiens GN=CAND1 PE=1 SV=2)

HSP 1 Score: 182.956 bits (463), Expect = 1.687e-45
Identity = 95/204 (46.57%), Postives = 141/204 (69.12%), Query Frame = 2
Query:    2 KDQDRHVRRAAVLALSTFAHNKPNLIKGXXXXXXXXXYDQTIVKKELIRTVDLGPFKHTVDDGLELRKAAFECVDTLLDSCLDQVNPSSFIVPYLKSGLEDHYDVKMPCHLILSKLADKCPSAVLAVLDSLVDPLQKTINFKPKQDAVKQEVDRNEDMIRSALRAIASLNQISGGDCSMKFKSLMSEISKSPMLWEKFYTIRNE 613
            +D D +VRR A++  ++ AHNKP+LI+          Y++T V+KELIR V++GPFKHTVDDGL++RKAAFEC+ TLLDSCLD+++   F+  +++ GL+DHYD+KM   L+L +L+  CPSAVL  LD LV+PL+ T   K K ++VKQE ++ +++ RSA+RA+A+L  I   + S       S+IS +P L   F +I+ +
Sbjct: 1016 EDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLDRLDIFEFL-NHVEDGLKDHYDIKMLTFLMLVRLSTLCPSAVLQRLDRLVEPLRATCTTKVKANSVKQEFEKQDELKRSAMRAVAALLTIPEAEKSPLMSEFQSQISSNPELAAIFESIQKD 1218          
BLAST of CX070224 vs. ExPASy Swiss-Prot
Match: CAND1_BOVIN (Cullin-associated NEDD8-dissociated protein 1 OS=Bos taurus GN=CAND1 PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.687e-45
Identity = 95/204 (46.57%), Postives = 141/204 (69.12%), Query Frame = 2
Query:    2 KDQDRHVRRAAVLALSTFAHNKPNLIKGXXXXXXXXXYDQTIVKKELIRTVDLGPFKHTVDDGLELRKAAFECVDTLLDSCLDQVNPSSFIVPYLKSGLEDHYDVKMPCHLILSKLADKCPSAVLAVLDSLVDPLQKTINFKPKQDAVKQEVDRNEDMIRSALRAIASLNQISGGDCSMKFKSLMSEISKSPMLWEKFYTIRNE 613
            +D D +VRR A++  ++ AHNKP+LI+          Y++T V+KELIR V++GPFKHTVDDGL++RKAAFEC+ TLLDSCLD+++   F+  +++ GL+DHYD+KM   L+L +L+  CPSAVL  LD LV+PL+ T   K K ++VKQE ++ +++ RSA+RA+A+L  I   + S       S+IS +P L   F +I+ +
Sbjct: 1016 EDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLDRLDIFEFL-NHVEDGLKDHYDIKMLTFLMLVRLSTLCPSAVLQRLDRLVEPLRATCTTKVKANSVKQEFEKQDELKRSAMRAVAALLTIPEAEKSPLMSEFQSQISSNPELAAIFESIQKD 1218          
BLAST of CX070224 vs. ExPASy Swiss-Prot
Match: CAND1_DICDI (Cullin-associated NEDD8-dissociated protein 1 OS=Dictyostelium discoideum GN=cand1 PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 5.079e-42
Identity = 91/204 (44.61%), Postives = 138/204 (67.65%), Query Frame = 2
Query:    5 DQDRHVRRAAVLALSTFAHNKPNLIKGXXXXXXXXXYDQTIVKKELIRTVDLGPFKHTVDDGLELRKAAFECVDTLLDSCLDQVNPSSFIVPYLKSGLED-HYDVKMPCHLILSKLADKCPSAVLAVLDSLVDPLQKTINFKPKQDAVKQEVDRNEDMIRSALRAIASLNQISGGDCSMKFKSLMSEISKSPMLWEKFYTIRNE 613
            D D  VRR+A+L+L+  AHNKPNLI+          Y+   +K ELIR VDLGPFKH VDDG+E+RK AFEC+ TLLD+ +D+++ + FIV  L  GL+D  YD+K+ CHL++ +LA+   +A+L  +  L++PL+  +  K  + AVKQ+++RNE+ IRSALRA+AS+++I   D  +KF+  +    ++  L  +F +I +E
Sbjct: 1023 DGDLIVRRSALLSLNYIAHNKPNLIRNDLSVYLPILYNNAKIKPELIREVDLGPFKHKVDDGIEIRKTAFECMYTLLDTSIDKIDVAPFIVS-LCDGLKDTQYDIKLLCHLMIIRLANSNGAALLENITLLLEPLRVILMTKVNETAVKQQIERNEECIRSALRAVASISRIPNSDSIVKFEEFVKNTIRTTPLAAQFNSILSE 1225          
BLAST of CX070224 vs. ExPASy Swiss-Prot
Match: CAND2_MOUSE (Cullin-associated NEDD8-dissociated protein 2 OS=Mus musculus GN=Cand2 PE=1 SV=2)

HSP 1 Score: 160.999 bits (406), Expect = 6.865e-39
Identity = 81/204 (39.71%), Postives = 134/204 (65.69%), Query Frame = 2
Query:    2 KDQDRHVRRAAVLALSTFAHNKPNLIKGXXXXXXXXXYDQTIVKKELIRTVDLGPFKHTVDDGLELRKAAFECVDTLLDSCLDQVNPSSFIVPYLKSGLEDHYDVKMPCHLILSKLADKCPSAVLAVLDSLVDPLQKTINFKPKQDAVKQEVDRNEDMIRSALRAIASLNQISGGDCSMKFKSLMSEISKSPMLWEKFYTIRNE 613
            +D D +VRRA +   ++  HNKP+L++          Y +T ++++LIR V++GPFKHTVDDGL++RKAAFEC+ +LL+SCL Q++   F+  +++ GL+DHYD++M   ++L++LA  CP+ VL  +D L++PL+ T   K K  +VKQE+++ E++ RSA+RA+A+L        S       ++I  +P L   F +I+ +
Sbjct: 1020 QDPDLNVRRATLTFFNSAVHNKPSLVRDLLDDILPLLYQETKIRRDLIREVEMGPFKHTVDDGLDVRKAAFECMYSLLESCLGQLDMCEFL-NHVEDGLKDHYDIRMLTFIMLARLATLCPAPVLQRVDRLIEPLRATCTAKVKAGSVKQELEKQEELKRSAMRAVAALLTNPEVRKSPTVADFSAQIRSNPELTTLFESIQKD 1222          
BLAST of CX070224 vs. ExPASy Swiss-Prot
Match: CAND2_HUMAN (Cullin-associated NEDD8-dissociated protein 2 OS=Homo sapiens GN=CAND2 PE=1 SV=3)

HSP 1 Score: 160.999 bits (406), Expect = 6.865e-39
Identity = 81/204 (39.71%), Postives = 134/204 (65.69%), Query Frame = 2
Query:    2 KDQDRHVRRAAVLALSTFAHNKPNLIKGXXXXXXXXXYDQTIVKKELIRTVDLGPFKHTVDDGLELRKAAFECVDTLLDSCLDQVNPSSFIVPYLKSGLEDHYDVKMPCHLILSKLADKCPSAVLAVLDSLVDPLQKTINFKPKQDAVKQEVDRNEDMIRSALRAIASLNQISGGDCSMKFKSLMSEISKSPMLWEKFYTIRNE 613
            +D D +VRRA +   ++  HNKP+L++          Y +T ++++LIR V++GPFKHTVDDGL++RKAAFEC+ +LL+SCL Q++   F+  +++ GL+DHYD++M   +++++LA  CP+ VL  +D L++PL+ T   K K  +VKQE ++ +++ RSA+RA+A+L  I     S       S+I  +P L   F +I+ +
Sbjct: 1021 QDPDLNVRRATLAFFNSAVHNKPSLVRDLLDDILPLLYQETKIRRDLIREVEMGPFKHTVDDGLDVRKAAFECMYSLLESCLGQLDICEFL-NHVEDGLKDHYDIRMLTFIMVARLATLCPAPVLQRVDRLIEPLRATCTAKVKAGSVKQEFEKQDELKRSAMRAVAALLTIPEVGKSPIMADFSSQIRSNPELAALFESIQKD 1223          
BLAST of CX070224 vs. ExPASy Swiss-Prot
Match: CAND2_RAT (Cullin-associated NEDD8-dissociated protein 2 OS=Rattus norvegicus GN=Cand2 PE=1 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.997e-38
Identity = 80/204 (39.22%), Postives = 134/204 (65.69%), Query Frame = 2
Query:    2 KDQDRHVRRAAVLALSTFAHNKPNLIKGXXXXXXXXXYDQTIVKKELIRTVDLGPFKHTVDDGLELRKAAFECVDTLLDSCLDQVNPSSFIVPYLKSGLEDHYDVKMPCHLILSKLADKCPSAVLAVLDSLVDPLQKTINFKPKQDAVKQEVDRNEDMIRSALRAIASLNQISGGDCSMKFKSLMSEISKSPMLWEKFYTIRNE 613
            +D D +VRRA +   ++  HNKP+L++          Y +T ++++LIR V++GPFKHTVDDGL++RKAAFEC+ +LL+SCL Q++   F+  +++ GL+DHYD++M   ++L++LA  CP+ VL  +D L++PL+ T   K K  +VKQE+++ +++ RSA+RA+A+L        S       ++I  +P L   F +I+ +
Sbjct: 1058 QDPDLNVRRATLTFFNSAVHNKPSLVRDLLDDILPLLYQETKIRRDLIREVEMGPFKHTVDDGLDVRKAAFECMYSLLESCLGQLDICEFL-NHVEDGLKDHYDIRMLTFIMLARLAALCPAPVLQRVDRLIEPLRATCTAKVKAGSVKQELEKQDELKRSAMRAVAALMTNPEVRKSPSVADFSTQIRSNPELATLFESIQKD 1260          
BLAST of CX070224 vs. ExPASy Swiss-Prot
Match: CAND1_SCHPO (Cullin-associated NEDD8-dissociated protein 1 OS=Schizosaccharomyces pombe GN=knd1 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.793e-13
Identity = 48/201 (23.88%), Postives = 97/201 (48.26%), Query Frame = 2
Query:    2 KDQDRHVRRAAVLALSTFAHNKPNLIKGXXXXXXXXXYDQTIVKKELIRTVDLGPFKHTVDDGLELRKAAFECVDTLLDSCLDQVNPSSFIVPYLKSGLEDHYDVKMPCHLILSKLADKCPSAVLAVLDSLVDPLQKTINFKPKQDAVKQEVDRNEDMIRSALRAIASL-------------NQISGGDCSMKFKSLMSEI 565
            ++ D  V +  +  + +   N+ + I             ++ V    +  V +GPF+H VD+ +  R+  FE + +LLD   + +N  +  +     GLED + +K+    IL KL D  PS +   +D++++ L+K I  +  +  +K + D   D++RSALR + ++             +Q+  G  S++++ + +EI
Sbjct: 1015 QNPDLEVSQETLQVIISVIKNRRSCIADVYNELLQGLISKSSVDSSNVHVVQMGPFQHVVDNSINQRQLVFETLYSLLD-IPESLNHLTHFLQVSVMGLEDEHYIKLVSLSILEKLVDCSPSIIDEQVDTILEALRKIIELRKTEKTLKTDSDNILDLVRSALRVLFTMKLKCDNPVISEFESQVQKGPYSLEYEGIKNEI 1214          
The following BLAST results are available for this feature:
BLAST of CX070224 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
CAND1_RAT1.687e-4546.57Cullin-associated NEDD8-dissociated protein 1 OS=R... [more]
CAND1_PONAB1.687e-4546.57Cullin-associated NEDD8-dissociated protein 1 OS=P... [more]
CAND1_MOUSE1.687e-4546.57Cullin-associated NEDD8-dissociated protein 1 OS=M... [more]
CAND1_HUMAN1.687e-4546.57Cullin-associated NEDD8-dissociated protein 1 OS=H... [more]
CAND1_BOVIN1.687e-4546.57Cullin-associated NEDD8-dissociated protein 1 OS=B... [more]
CAND1_DICDI5.079e-4244.61Cullin-associated NEDD8-dissociated protein 1 OS=D... [more]
CAND2_MOUSE6.865e-3939.71Cullin-associated NEDD8-dissociated protein 2 OS=M... [more]
CAND2_HUMAN6.865e-3939.71Cullin-associated NEDD8-dissociated protein 2 OS=H... [more]
CAND2_RAT1.997e-3839.22Cullin-associated NEDD8-dissociated protein 2 OS=R... [more]
CAND1_SCHPO3.793e-1323.88Cullin-associated NEDD8-dissociated protein 1 OS=S... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_15E07_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-15E07-J13-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070224 ID=CX070224; Name=CX070224; organism=Citrus sinensis; type=EST; length=792bp
CAAAGACCAAGACAGGCATGTCAGGCGTGCAGCTGTATTGGCTTTGAGTA
CATTTGCTCACAATAAGCCTAATTTGATCAAGGGTCTTCTTCCAGAGCTG
CTGCCACTTCTTTATGATCAAACCATTGTTAAGAAAGAACTGATAAGAAC
AGTTGATCTTGGCCCTTTCAAGCACACCGTGGACGACGGACTTGAATTGA
GGAAAGCCGCATTTGAATGTGTCGACACATTGTTGGATAGTTGTCTTGAT
CAAGTGAACCCTTCATCTTTCATCGTTCCTTACCTCAAATCGGGCCTGGA
GGATCATTATGATGTTAAAATGCCTTGTCATCTTATCCTCTCAAAGTTAG
CAGATAAATGTCCATCTGCTGTATTAGCAGTGTTGGACTCATTGGTGGAC
CCTCTCCAAAAGACTATCAATTTTAAGCCAAAGCAAGATGCTGTCAAGCA
AGAAGTAGACCGTAATGAAGACATGATTCGCAGTGCACTGCGAGCAATTG
CGTCCTTGAATCAAATAAGTGGAGGAGATTGCAGCATGAAATTCAAGAGC
CTTATGAGTGAAATTTCGAAATCACCAATGCTATGGGAGAAGTTTTATAC
CATCCGGAATGAGTGAGTCGATTTGTCCTTGCAATTGAACCGTAACATAT
CAAACTCTCCCGACAAGGAATGAAGAGGAGTATATTGCCTGTTGTGGGGC
CTGCAGAGAACGACCCTTAGGGAGAAATCAAGTGGGAAAGTGGTCCCTGT
TTGATTGATGTACATGTACAAAGGGCATTTGATAATTTTAAA
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