CX070223

Overview
NameCX070223
Unique NameCX070223
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length853
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX070223 vs. ExPASy Swiss-Prot
Match: CAND1_RAT (Cullin-associated NEDD8-dissociated protein 1 OS=Rattus norvegicus GN=Cand1 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.521e-18
Identity = 51/125 (40.80%), Postives = 81/125 (64.80%), Query Frame = -2
Query:  478 SCLDQVNPSSFIVPYLKSGLEDHYDVKMPCHLILSKLADKCPSAVLAVLDSLVDPLQKTINFKPKQDAVKQEVDRNEDMIRSALRAIASLNQISGGDCSMKFKSLMSEISKSPMLWEKFYTIRNE 852
            SCLD+++   F+  +++ GL+DHYD+KM   L+L +L+  CPSAVL  LD LV+PL+ T   K K ++VKQE ++ +++ RSA+RA+A+L  I   + S       S+IS +P L   F +I+ +
Sbjct: 1095 SCLDRLDIFEFL-NHVEDGLKDHYDIKMLTFLMLVRLSTLCPSAVLQRLDRLVEPLRATCTTKVKANSVKQEFEKQDELKRSAMRAVAALLTIPEAEKSPLMSEFQSQISSNPELAAIFESIQKD 1218          
BLAST of CX070223 vs. ExPASy Swiss-Prot
Match: CAND1_PONAB (Cullin-associated NEDD8-dissociated protein 1 OS=Pongo abelii GN=CAND1 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.521e-18
Identity = 51/125 (40.80%), Postives = 81/125 (64.80%), Query Frame = -2
Query:  478 SCLDQVNPSSFIVPYLKSGLEDHYDVKMPCHLILSKLADKCPSAVLAVLDSLVDPLQKTINFKPKQDAVKQEVDRNEDMIRSALRAIASLNQISGGDCSMKFKSLMSEISKSPMLWEKFYTIRNE 852
            SCLD+++   F+  +++ GL+DHYD+KM   L+L +L+  CPSAVL  LD LV+PL+ T   K K ++VKQE ++ +++ RSA+RA+A+L  I   + S       S+IS +P L   F +I+ +
Sbjct: 1095 SCLDRLDIFEFL-NHVEDGLKDHYDIKMLTFLMLVRLSTLCPSAVLQRLDRLVEPLRATCTTKVKANSVKQEFEKQDELKRSAMRAVAALLTIPEAEKSPLMSEFQSQISSNPELAAIFESIQKD 1218          
BLAST of CX070223 vs. ExPASy Swiss-Prot
Match: CAND1_MOUSE (Cullin-associated NEDD8-dissociated protein 1 OS=Mus musculus GN=Cand1 PE=2 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.521e-18
Identity = 51/125 (40.80%), Postives = 81/125 (64.80%), Query Frame = -2
Query:  478 SCLDQVNPSSFIVPYLKSGLEDHYDVKMPCHLILSKLADKCPSAVLAVLDSLVDPLQKTINFKPKQDAVKQEVDRNEDMIRSALRAIASLNQISGGDCSMKFKSLMSEISKSPMLWEKFYTIRNE 852
            SCLD+++   F+  +++ GL+DHYD+KM   L+L +L+  CPSAVL  LD LV+PL+ T   K K ++VKQE ++ +++ RSA+RA+A+L  I   + S       S+IS +P L   F +I+ +
Sbjct: 1095 SCLDRLDIFEFL-NHVEDGLKDHYDIKMLTFLMLVRLSTLCPSAVLQRLDRLVEPLRATCTTKVKANSVKQEFEKQDELKRSAMRAVAALLTIPEAEKSPLMSEFQSQISSNPELAAIFESIQKD 1218          
BLAST of CX070223 vs. ExPASy Swiss-Prot
Match: CAND1_HUMAN (Cullin-associated NEDD8-dissociated protein 1 OS=Homo sapiens GN=CAND1 PE=1 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.521e-18
Identity = 51/125 (40.80%), Postives = 81/125 (64.80%), Query Frame = -2
Query:  478 SCLDQVNPSSFIVPYLKSGLEDHYDVKMPCHLILSKLADKCPSAVLAVLDSLVDPLQKTINFKPKQDAVKQEVDRNEDMIRSALRAIASLNQISGGDCSMKFKSLMSEISKSPMLWEKFYTIRNE 852
            SCLD+++   F+  +++ GL+DHYD+KM   L+L +L+  CPSAVL  LD LV+PL+ T   K K ++VKQE ++ +++ RSA+RA+A+L  I   + S       S+IS +P L   F +I+ +
Sbjct: 1095 SCLDRLDIFEFL-NHVEDGLKDHYDIKMLTFLMLVRLSTLCPSAVLQRLDRLVEPLRATCTTKVKANSVKQEFEKQDELKRSAMRAVAALLTIPEAEKSPLMSEFQSQISSNPELAAIFESIQKD 1218          
BLAST of CX070223 vs. ExPASy Swiss-Prot
Match: CAND1_BOVIN (Cullin-associated NEDD8-dissociated protein 1 OS=Bos taurus GN=CAND1 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.521e-18
Identity = 51/125 (40.80%), Postives = 81/125 (64.80%), Query Frame = -2
Query:  478 SCLDQVNPSSFIVPYLKSGLEDHYDVKMPCHLILSKLADKCPSAVLAVLDSLVDPLQKTINFKPKQDAVKQEVDRNEDMIRSALRAIASLNQISGGDCSMKFKSLMSEISKSPMLWEKFYTIRNE 852
            SCLD+++   F+  +++ GL+DHYD+KM   L+L +L+  CPSAVL  LD LV+PL+ T   K K ++VKQE ++ +++ RSA+RA+A+L  I   + S       S+IS +P L   F +I+ +
Sbjct: 1095 SCLDRLDIFEFL-NHVEDGLKDHYDIKMLTFLMLVRLSTLCPSAVLQRLDRLVEPLRATCTTKVKANSVKQEFEKQDELKRSAMRAVAALLTIPEAEKSPLMSEFQSQISSNPELAAIFESIQKD 1218          
BLAST of CX070223 vs. ExPASy Swiss-Prot
Match: CAND1_DICDI (Cullin-associated NEDD8-dissociated protein 1 OS=Dictyostelium discoideum GN=cand1 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.230e-16
Identity = 46/124 (37.10%), Postives = 82/124 (66.13%), Query Frame = -2
Query:  478 LDQVNPSSFIVPYLKSGLED-HYDVKMPCHLILSKLADKCPSAVLAVLDSLVDPLQKTINFKPKQDAVKQEVDRNEDMIRSALRAIASLNQISGGDCSMKFKSLMSEISKSPMLWEKFYTIRNE 846
            +D+++ + FIV  L  GL+D  YD+K+ CHL++ +LA+   +A+L  +  L++PL+  +  K  + AVKQ+++RNE+ IRSALRA+AS+++I   D  +KF+  +    ++  L  +F +I +E
Sbjct: 1103 IDKIDVAPFIVS-LCDGLKDTQYDIKLLCHLMIIRLANSNGAALLENITLLLEPLRVILMTKVNETAVKQQIERNEECIRSALRAVASISRIPNSDSIVKFEEFVKNTIRTTPLAAQFNSILSE 1225          
BLAST of CX070223 vs. ExPASy Swiss-Prot
Match: CAND2_MOUSE (Cullin-associated NEDD8-dissociated protein 2 OS=Mus musculus GN=Cand2 PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 5.983e-15
Identity = 44/125 (35.20%), Postives = 77/125 (61.60%), Query Frame = -2
Query:  478 SCLDQVNPSSFIVPYLKSGLEDHYDVKMPCHLILSKLADKCPSAVLAVLDSLVDPLQKTINFKPKQDAVKQEVDRNEDMIRSALRAIASLNQISGGDCSMKFKSLMSEISKSPMLWEKFYTIRNE 852
            SCL Q++   F+  +++ GL+DHYD++M   ++L++LA  CP+ VL  +D L++PL+ T   K K  +VKQE+++ E++ RSA+RA+A+L        S       ++I  +P L   F +I+ +
Sbjct: 1099 SCLGQLDMCEFL-NHVEDGLKDHYDIRMLTFIMLARLATLCPAPVLQRVDRLIEPLRATCTAKVKAGSVKQELEKQEELKRSAMRAVAALLTNPEVRKSPTVADFSAQIRSNPELTTLFESIQKD 1222          
BLAST of CX070223 vs. ExPASy Swiss-Prot
Match: CAND2_HUMAN (Cullin-associated NEDD8-dissociated protein 2 OS=Homo sapiens GN=CAND2 PE=1 SV=3)

HSP 1 Score: 81.6481 bits (200), Expect = 5.983e-15
Identity = 44/125 (35.20%), Postives = 77/125 (61.60%), Query Frame = -2
Query:  478 SCLDQVNPSSFIVPYLKSGLEDHYDVKMPCHLILSKLADKCPSAVLAVLDSLVDPLQKTINFKPKQDAVKQEVDRNEDMIRSALRAIASLNQISGGDCSMKFKSLMSEISKSPMLWEKFYTIRNE 852
            SCL Q++   F+  +++ GL+DHYD++M   +++++LA  CP+ VL  +D L++PL+ T   K K  +VKQE ++ +++ RSA+RA+A+L  I     S       S+I  +P L   F +I+ +
Sbjct: 1100 SCLGQLDICEFL-NHVEDGLKDHYDIRMLTFIMVARLATLCPAPVLQRVDRLIEPLRATCTAKVKAGSVKQEFEKQDELKRSAMRAVAALLTIPEVGKSPIMADFSSQIRSNPELAALFESIQKD 1223          
BLAST of CX070223 vs. ExPASy Swiss-Prot
Match: CAND2_RAT (Cullin-associated NEDD8-dissociated protein 2 OS=Rattus norvegicus GN=Cand2 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.741e-14
Identity = 43/125 (34.40%), Postives = 77/125 (61.60%), Query Frame = -2
Query:  478 SCLDQVNPSSFIVPYLKSGLEDHYDVKMPCHLILSKLADKCPSAVLAVLDSLVDPLQKTINFKPKQDAVKQEVDRNEDMIRSALRAIASLNQISGGDCSMKFKSLMSEISKSPMLWEKFYTIRNE 852
            SCL Q++   F+  +++ GL+DHYD++M   ++L++LA  CP+ VL  +D L++PL+ T   K K  +VKQE+++ +++ RSA+RA+A+L        S       ++I  +P L   F +I+ +
Sbjct: 1137 SCLGQLDICEFL-NHVEDGLKDHYDIRMLTFIMLARLAALCPAPVLQRVDRLIEPLRATCTAKVKAGSVKQELEKQDELKRSAMRAVAALMTNPEVRKSPSVADFSTQIRSNPELATLFESIQKD 1260          
The following BLAST results are available for this feature:
BLAST of CX070223 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
CAND1_RAT1.521e-1840.80Cullin-associated NEDD8-dissociated protein 1 OS=R... [more]
CAND1_PONAB1.521e-1840.80Cullin-associated NEDD8-dissociated protein 1 OS=P... [more]
CAND1_MOUSE1.521e-1840.80Cullin-associated NEDD8-dissociated protein 1 OS=M... [more]
CAND1_HUMAN1.521e-1840.80Cullin-associated NEDD8-dissociated protein 1 OS=H... [more]
CAND1_BOVIN1.521e-1840.80Cullin-associated NEDD8-dissociated protein 1 OS=B... [more]
CAND1_DICDI9.230e-1637.10Cullin-associated NEDD8-dissociated protein 1 OS=D... [more]
CAND2_MOUSE5.983e-1535.20Cullin-associated NEDD8-dissociated protein 2 OS=M... [more]
CAND2_HUMAN5.983e-1535.20Cullin-associated NEDD8-dissociated protein 2 OS=H... [more]
CAND2_RAT1.741e-1434.40Cullin-associated NEDD8-dissociated protein 2 OS=R... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_15E07_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-15E07-J13-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070223 ID=CX070223; Name=CX070223; organism=Citrus sinensis; type=EST; length=853bp
TTTTTTTTTTTTTTTTTGATTAATTTCCTGTGAGAGAACCAAATTAGATT
CCATCACCTTATATAAGTTAAGCCAATGCAAACTAATTGGGTATCATCTG
CCTCAAATGCCGTAAGACATCTGTTTTTCTATTCATGCAAAAATGCATGG
TAAAAACTAGATTAAAATATCACAATGAAAAATCTGATCATGAAACGATG
AGGGCAGTGGACTTGGCCCTATACAATTAACACAATCATCATGAGGTTCT
TTTCTATAATAAGTTGCTGCTGCTGCTGCTGCTGCTTCAAGCAAAATTTT
TAAAATTATCAAATGCCCTTTGTACATGTACATCAATCAAACAGGGACCA
CTTTCCCACTTGATTTCTCCCTAAGGGTCGTTCTCTGCAGGCCCCACAAC
AGGCAATATACTCCTCTTCATTCCTTGTCGGGAGAGTTTGATATGTTACG
GTTCAATTGCAAGGACAAATCGACTCACTCATTCCGGATGGTATAAAACT
TCTCCCATAGCATTGGTGATTTCGAAATTTCACTCATAAGGCTCTTGAAT
TTCATGCTGCAATCTCCTCCACTTATTTGATTCAAGGACGCAATTGCTCG
CAGTGCACTGCGAATCATGTCTTCATTACGGTCTACTTCTTGCTTGACAG
CATCTTGCTTTGGCTTAAAATTGATAGTCTTTTGGAGAGGGTCCACCAAT
GAGTCCAACACTGCTAATACAGCAGATGGACATTTATCTGCTAACTTTGA
GAGGATAAGATGACAAGGCATTTTAACATCATAATGATCCTCCAGGCCCG
ATTTGAGGTAAGGAACGATGAAAGATGAAGGGTTCACTTGATCAAGACAA
CTA
back to top