CX070216

Overview
NameCX070216
Unique NameCX070216
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length790
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX070216 vs. ExPASy Swiss-Prot
Match: RIBBA_ARATH (Riboflavin biosynthesis protein ribBA, chloroplastic OS=Arabidopsis thaliana GN=RIBBA PE=2 SV=2)

HSP 1 Score: 416.772 bits (1070), Expect = 6.941e-116
Identity = 202/233 (86.70%), Postives = 218/233 (93.56%), Query Frame = 2
Query:    2 LREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHIYGLESNGRLTNLI 700
            LREFA   NLK++SIADLIRYRRKRDKLV+R+SAARIPTMWGPFTAYCYRSILDGIEHIAMVKG+IGDGQDILVRVHSECLTGDIFGSARCDCG+QLAL+MQQIEA GRGVLVYLRGHEGRGIGLGHKLRAYNLQD GRDTVEANEELGLPVDSREYGIGAQ++RDLGVRTMKLMTNNP+KYVGLKGYGLA+ GRVPL++ I KENKRYLETKR KMGH+YGL+  G +   I
Sbjct:  305 LREFAAENNLKVVSIADLIRYRRKRDKLVERASAARIPTMWGPFTAYCYRSILDGIEHIAMVKGEIGDGQDILVRVHSECLTGDIFGSARCDCGNQLALSMQQIEATGRGVLVYLRGHEGRGIGLGHKLRAYNLQDAGRDTVEANEELGLPVDSREYGIGAQIIRDLGVRTMKLMTNNPAKYVGLKGYGLAIVGRVPLLSLITKENKRYLETKRTKMGHMYGLKFKGDVVEKI 537          
BLAST of CX070216 vs. ExPASy Swiss-Prot
Match: RIBBA_NOCFA (Riboflavin biosynthesis protein ribBA OS=Nocardia farcinica GN=ribBA PE=3 SV=1)

HSP 1 Score: 290.426 bits (742), Expect = 7.503e-78
Identity = 140/225 (62.22%), Postives = 177/225 (78.67%), Query Frame = 2
Query:    2 LREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGH-IYGLE 673
            LR FA   +L +ISIAD+I +RRK +K V R + ARIPT  G FTA  Y+SI D +EH+A+V+GDIGDG+D+LVRVHSECLTGD+FGS RCDCG QL  A++ ++  GRGV++Y+RGHEGRGIGL HKL+AY LQD GRDTV+AN +LGLP D+R+YG GAQ+L DLG+R+M+L+TNNP+K VGL GYGL +  RVP+      EN RYL TKR +MGH + GL+
Sbjct:  181 LRVFADDHDLALISIADMIAWRRKHEKQVVRVAEARIPTAHGAFTAVGYQSIYDDVEHVALVRGDIGDGEDVLVRVHSECLTGDVFGSLRCDCGPQLDAALEMVDQEGRGVVLYMRGHEGRGIGLMHKLQAYQLQDSGRDTVDANLDLGLPADARDYGTGAQILVDLGIRSMRLLTNNPAKRVGLDGYGLTITERVPMPLRANAENLRYLRTKRDRMGHDLVGLD 405          
BLAST of CX070216 vs. ExPASy Swiss-Prot
Match: RIBBA_MYCA9 (Riboflavin biosynthesis protein ribBA OS=Mycobacterium abscessus (strain ATCC 19977 / DSM 44196) GN=ribBA PE=3 SV=1)

HSP 1 Score: 280.411 bits (716), Expect = 7.764e-75
Identity = 138/223 (61.88%), Postives = 168/223 (75.34%), Query Frame = 2
Query:    2 LREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDI----GDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGH 658
            LR FA   NL ++SIADLI +RRK +K V R + ARIPT  G F A  Y SI D +EH+A+V GDI    GDG D+LVRVHSECLTGD+FGS RCDCG QL  AM+ +   GRG+++Y+RGHEGRGIGL HKL+AY LQD G DTV+AN +LGLP D+R+YG+GAQ+L DLGV++M+L+TNNP+K VGL GYGL +  RVPL      EN RYL TKR +MGH
Sbjct:  181 LRVFADEHNLALVSIADLIEWRRKHEKHVQRIAEARIPTQHGEFRAVGYTSIYDDVEHVALVLGDISGPDGDGNDVLVRVHSECLTGDVFGSRRCDCGPQLDAAMEMVAKEGRGIVLYMRGHEGRGIGLMHKLQAYQLQDAGEDTVDANLKLGLPADARDYGLGAQILVDLGVKSMRLLTNNPAKRVGLDGYGLHIIERVPLPVRANSENIRYLRTKRDRMGH 403          
BLAST of CX070216 vs. ExPASy Swiss-Prot
Match: RIBBA_RHOSR (Riboflavin biosynthesis protein ribBA OS=Rhodococcus sp. (strain RHA1) GN=ribBA PE=3 SV=1)

HSP 1 Score: 279.641 bits (714), Expect = 1.324e-74
Identity = 140/229 (61.14%), Postives = 173/229 (75.55%), Query Frame = 2
Query:    2 LREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDI----GDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGH-IYGLE 673
            LR FA   NL +ISIADLI +RRK +K V+R ++ARIPT  G FTA  YRSI D +EH+A+V+GD+    GDG D+LVRVHSECLTGD+FGS RCDCG QL  A+  +   GRGV++Y+RGHEGRGIGL HKL+AY LQD G DTV+AN ELGLP D+R+YGIGAQ+L DLG+ +M+L+TNNP+K VGL GYGL +  RV +      EN  YL TKR +MGH + GL+
Sbjct:  181 LRVFADDHNLALISIADLIAWRRKHEKHVERVASARIPTRHGEFTAVGYRSIYDDVEHVALVRGDLPGPDGDGSDVLVRVHSECLTGDVFGSLRCDCGPQLDAALDMVAQEGRGVVLYMRGHEGRGIGLMHKLQAYQLQDAGSDTVDANLELGLPADARDYGIGAQILVDLGISSMRLLTNNPAKRVGLDGYGLQITERVSMPLRANAENLTYLRTKRDRMGHDLIGLD 409          
BLAST of CX070216 vs. ExPASy Swiss-Prot
Match: RIBBA_SALAI (Riboflavin biosynthesis protein ribBA OS=Salinispora arenicola (strain CNS-205) GN=ribBA PE=3 SV=1)

HSP 1 Score: 278.87 bits (712), Expect = 2.259e-74
Identity = 134/220 (60.91%), Postives = 168/220 (76.36%), Query Frame = 2
Query:    2 LREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHI 661
            L  F    +L +I+IADL+ YRR+ +K V+  + AR+PT  G F A+ YRS  D  EH+A+V GD+GDG+D+LVRVHSECLTGD+ GS RCDCG QL  A+ Q+   GRGV++Y+RGHEGRGIGL HKL+AY LQD GRDTV+AN +LGLP D+R+YG GAQ+L DLGVR+M+L+TNNP+K  GL+GYGL VAGRV L      EN RYL TKR +MGH+
Sbjct:  179 LERFCAEHSLVLITIADLVAYRRRTEKQVELVAEARMPTRHGVFRAFGYRSDYDSAEHVALVMGDLGDGRDVLVRVHSECLTGDVLGSLRCDCGPQLNAALDQVAREGRGVVLYVRGHEGRGIGLLHKLQAYQLQDTGRDTVDANLDLGLPADARDYGTGAQILYDLGVRSMRLLTNNPAKRAGLEGYGLTVAGRVELPVRPHPENVRYLRTKRDRMGHL 398          
BLAST of CX070216 vs. ExPASy Swiss-Prot
Match: RIBBA_RHOE4 (Riboflavin biosynthesis protein ribBA OS=Rhodococcus erythropolis (strain PR4 / NBRC 100887) GN=ribBA PE=3 SV=1)

HSP 1 Score: 278.87 bits (712), Expect = 2.259e-74
Identity = 141/229 (61.57%), Postives = 171/229 (74.67%), Query Frame = 2
Query:    2 LREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDI----GDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGH-IYGLE 673
            LR FA   NL +ISIADLI +RRK +K V R + ARIPT  G FTA  Y SI D +EH+A+V+GDI    GDG D+LVRVHSECLTGD+FGS RCDCG QL  A+  +   GRGV++Y+RGHEGRGIGL HKL+AY LQD G DTV+AN ELGLP D+R+YGIGAQ+L DLG+ +M+L+TNNP+K VGL GYGL +  RVP+      EN  YL TKR +MGH + GL+
Sbjct:  181 LRVFADEHNLALISIADLIAWRRKHEKHVLRIAEARIPTRHGEFTAVGYTSIYDEVEHVALVRGDIAGPDGDGSDVLVRVHSECLTGDVFGSLRCDCGPQLDAALDMVAQEGRGVVLYMRGHEGRGIGLMHKLQAYQLQDAGSDTVDANLELGLPADARDYGIGAQILVDLGISSMRLLTNNPAKRVGLDGYGLQITDRVPMPLRANAENLTYLRTKRDRMGHDLIGLD 409          
BLAST of CX070216 vs. ExPASy Swiss-Prot
Match: RIBBA_SALTO (Riboflavin biosynthesis protein ribBA OS=Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) GN=ribBA PE=3 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 3.853e-74
Identity = 134/222 (60.36%), Postives = 166/222 (74.77%), Query Frame = 2
Query:    2 LREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHIYG 667
            L  F    +L +++IADL+ YRR+ +K V+  + AR+PT  G F    YR   D  EH+A+V GD+GDG+D+LVR HSECLTGD+FGS RCDCG QL  AM+ +   GRGV++Y+RGHEGRGIGL HKLRAY LQD GRDTVEAN ELGLPVD+R+YG GAQ+L DLGVR+M+L+TNNP+K  GL+GYGL V  RV L      EN+RYL TKR +MGH+ G
Sbjct:  179 LERFCAEHSLVLVTIADLVMYRRRTEKQVELVAEARLPTRHGDFRVAGYRGDYDSAEHVALVMGDLGDGRDVLVRAHSECLTGDVFGSLRCDCGLQLDTAMELVAKEGRGVVLYIRGHEGRGIGLLHKLRAYQLQDKGRDTVEANLELGLPVDARDYGTGAQVLYDLGVRSMRLLTNNPAKRAGLEGYGLTVTERVALPVQSHPENERYLRTKRDRMGHLLG 400          
BLAST of CX070216 vs. ExPASy Swiss-Prot
Match: RIBBA_SYNWW (Riboflavin biosynthesis protein ribBA OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=ribBA PE=3 SV=1)

HSP 1 Score: 276.174 bits (705), Expect = 1.464e-73
Identity = 138/220 (62.73%), Postives = 170/220 (77.27%), Query Frame = 2
Query:    2 LREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHI 661
            L EFA++ NLK+ SIADLI YRR+++KLV R + A++PTM+G F A  Y S+LD   HIA+VKG+  + + ILVRVHSECLTGD+FGS RCDCG+QL  AM  I + G+GVL+Y+R  EGRGIGL +K++AY LQD+GRDTVEAN ELG P D R+YGIGAQ+L DLGVR M+LMTNNP K  GL+GYGL V  RV +  P K EN RYL TK+ KMGH+
Sbjct:  176 LLEFARQHNLKLASIADLIEYRRRKEKLVVRVTDAQLPTMYGDFVAVAYESLLDNKGHIALVKGEWEEDEPILVRVHSECLTGDVFGSRRCDCGEQLETAMSMIASEGKGVLLYMR-QEGRGIGLLNKIKAYKLQDNGRDTVEANLELGFPADLRDYGIGAQILVDLGVRKMRLMTNNPKKIRGLEGYGLEVVERVAIEMPHKPENTRYLRTKKEKMGHL 394          
BLAST of CX070216 vs. ExPASy Swiss-Prot
Match: RIBBA_MYCGI (Riboflavin biosynthesis protein ribBA OS=Mycobacterium gilvum (strain PYR-GCK) GN=ribBA PE=3 SV=1)

HSP 1 Score: 274.248 bits (700), Expect = 5.564e-73
Identity = 139/229 (60.70%), Postives = 171/229 (74.67%), Query Frame = 2
Query:    2 LREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDI----GDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGH-IYGLE 673
            LR FA   +L +ISIADLI +RRK +K + R + ARIPT  G F A  Y SI + +EH+A+VKGDI    GDG D+LVRVHSECLTGD+FGS RCDCG QL  A+  +   GRG+++Y+RGHEGRGIGL HKL+AY LQD G DTV+AN +LGLP D+R+YG GAQ+L DLGVR+M+L+TNNP+K VGL GYGL +  RVPL      EN RYL TKR +MGH + GL+
Sbjct:  181 LRIFADEHDLALISIADLIEWRRKHEKHIARVAEARIPTRHGEFRAVGYTSIYEDVEHVALVKGDIAGPHGDGHDVLVRVHSECLTGDVFGSRRCDCGPQLDAALAMVAREGRGIVLYMRGHEGRGIGLMHKLQAYQLQDAGDDTVDANLKLGLPADARDYGTGAQILVDLGVRSMRLLTNNPAKRVGLDGYGLHIIERVPLPVRANAENIRYLMTKRDRMGHDLVGLD 409          
BLAST of CX070216 vs. ExPASy Swiss-Prot
Match: RIBBA_MYCPA (Riboflavin biosynthesis protein ribBA OS=Mycobacterium paratuberculosis GN=ribBA PE=3 SV=1)

HSP 1 Score: 273.863 bits (699), Expect = 7.267e-73
Identity = 136/223 (60.99%), Postives = 168/223 (75.34%), Query Frame = 2
Query:    2 LREFAKRENLKIISIADLIRYRRKRDKLVDRSSAARIPTMWGPFTAYCYRSILDGIEHIAMVKGDIG----DGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGH 658
            LR FA   +L +I+IADLI +RRK +K ++R + ARIPT  G F A  Y SI + +EH+A+V+G+I     DG D+LVRVHSECLTGD+FGS RCDCG QL  AM  +   GRG+++Y+RGHEGRGIGL HKL+AY LQD G DTV+AN +LGLP D+R+YGIGAQ+L DLGVR+M+L+TNNP+K VGL GYGL +  RVPL      EN RYL TKR KMGH
Sbjct:  181 LRVFADEHDLAMITIADLIEWRRKHEKHIERIAEARIPTRHGEFRAIGYTSIYEEVEHVALVRGEIAGPNSDGDDVLVRVHSECLTGDVFGSRRCDCGPQLDAAMAMVAREGRGIVLYMRGHEGRGIGLMHKLQAYQLQDAGEDTVDANLKLGLPADARDYGIGAQILVDLGVRSMRLLTNNPAKRVGLDGYGLHIIERVPLPVRTNAENIRYLMTKRDKMGH 403          
The following BLAST results are available for this feature:
BLAST of CX070216 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 221
Match NameE-valueIdentityDescription
RIBBA_ARATH6.941e-11686.70Riboflavin biosynthesis protein ribBA, chloroplast... [more]
RIBBA_NOCFA7.503e-7862.22Riboflavin biosynthesis protein ribBA OS=Nocardia ... [more]
RIBBA_MYCA97.764e-7561.88Riboflavin biosynthesis protein ribBA OS=Mycobacte... [more]
RIBBA_RHOSR1.324e-7461.14Riboflavin biosynthesis protein ribBA OS=Rhodococc... [more]
RIBBA_SALAI2.259e-7460.91Riboflavin biosynthesis protein ribBA OS=Salinispo... [more]
RIBBA_RHOE42.259e-7461.57Riboflavin biosynthesis protein ribBA OS=Rhodococc... [more]
RIBBA_SALTO3.853e-7460.36Riboflavin biosynthesis protein ribBA OS=Salinispo... [more]
RIBBA_SYNWW1.464e-7362.73Riboflavin biosynthesis protein ribBA OS=Syntropho... [more]
RIBBA_MYCGI5.564e-7360.70Riboflavin biosynthesis protein ribBA OS=Mycobacte... [more]
RIBBA_MYCPA7.267e-7360.99Riboflavin biosynthesis protein ribBA OS=Mycobacte... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_15E03_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-15E03-J5-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070216 ID=CX070216; Name=CX070216; organism=Citrus sinensis; type=EST; length=790bp
GCTTCGTGAATTTGCTAAGAGGGAAAATTTAAAAATTATATCAATTGCTG
ATTTAATAAGGTATAGGAGGAAGAGAGATAAACTAGTAGATCGTTCTTCT
GCTGCAAGGATACCTACGATGTGGGGTCCATTTACTGCTTACTGTTACAG
ATCAATTTTGGATGGAATTGAGCATATAGCAATGGTTAAGGGTGACATTG
GGGATGGACAAGATATTCTTGTGAGAGTGCACTCAGAGTGTCTCACTGGA
GATATATTTGGATCAGCCAGATGTGATTGTGGTGATCAGCTTGCACTTGC
AATGCAGCAGATTGAGGCTGCTGGCAGGGGTGTATTAGTTTATCTCCGTG
GTCATGAGGGAAGGGGCATTGGTTTAGGCCACAAGCTTCGCGCTTATAAC
TTGCAGGACGATGGGCGTGATACAGTTGAAGCAAATGAGGAATTGGGATT
GCCTGTTGACTCACGGGAATATGGCATTGGTGCACAGATGCTAAGGGATC
TTGGTGTTCGAACAATGAAGCTGATGACAAATAACCCTTCGAAGTATGTT
GGACTCAAGGGTTATGGTTTGGCAGTTGCAGGAAGGGTTCCCCTAATAAC
TCCCATTAAAAAGGAAAACAAGAGATATCTGGAGACTAAACGTGCTAAAA
TGGGTCACATTTATGGGTTAGAATCTAATGGCCGGTTAACAAATCTCATT
AACGTTAACGGTAAGCCGAGTATCAAATCTTCATCTGATACTGTATCTGA
CTCGTAAGCTGCACTAATTTACTTGGTTTGGACACGTGAT
back to top