CX070215

Overview
NameCX070215
Unique NameCX070215
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length851
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX070215 vs. ExPASy Swiss-Prot
Match: RIBBA_ARATH (Riboflavin biosynthesis protein ribBA, chloroplastic OS=Arabidopsis thaliana GN=RIBBA PE=2 SV=2)

HSP 1 Score: 295.434 bits (755), Expect = 2.621e-79
Identity = 143/166 (86.14%), Postives = 154/166 (92.77%), Query Frame = -2
Query:  353 DGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHIYGLESNGRLTNLI 850
            DGQDILVRVHSECLTGDIFGSARCDCG+QLAL+MQQIEA GRGVLVYLRGHEGRGIGLGHKLRAYNLQD GRDTVEANEELGLPVDSREYGIGAQ++RDLGVRTMKLMTNNP+KYVGLKGYGLA+ GRVPL++ I KENKRYLETKR KMGH+YGL+  G +   I
Sbjct:  372 DGQDILVRVHSECLTGDIFGSARCDCGNQLALSMQQIEATGRGVLVYLRGHEGRGIGLGHKLRAYNLQDAGRDTVEANEELGLPVDSREYGIGAQIIRDLGVRTMKLMTNNPAKYVGLKGYGLAIVGRVPLLSLITKENKRYLETKRTKMGHMYGLKFKGDVVEKI 537          
BLAST of CX070215 vs. ExPASy Swiss-Prot
Match: RIBBA_SALTO (Riboflavin biosynthesis protein ribBA OS=Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) GN=ribBA PE=3 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 3.682e-57
Identity = 106/155 (68.39%), Postives = 125/155 (80.65%), Query Frame = -2
Query:  386 DGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHIYG 850
            DG+D+LVR HSECLTGD+FGS RCDCG QL  AM+ +   GRGV++Y+RGHEGRGIGL HKLRAY LQD GRDTVEAN ELGLPVD+R+YG GAQ+L DLGVR+M+L+TNNP+K  GL+GYGL V  RV L      EN+RYL TKR +MGH+ G
Sbjct:  246 DGRDVLVRAHSECLTGDVFGSLRCDCGLQLDTAMELVAKEGRGVVLYIRGHEGRGIGLLHKLRAYQLQDKGRDTVEANLELGLPVDARDYGTGAQVLYDLGVRSMRLLTNNPAKRAGLEGYGLTVTERVALPVQSHPENERYLRTKRDRMGHLLG 400          
BLAST of CX070215 vs. ExPASy Swiss-Prot
Match: RIBBA_NOCFA (Riboflavin biosynthesis protein ribBA OS=Nocardia farcinica GN=ribBA PE=3 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.827e-56
Identity = 102/158 (64.56%), Postives = 128/158 (81.01%), Query Frame = -2
Query:  380 DGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGH-IYGLE 850
            DG+D+LVRVHSECLTGD+FGS RCDCG QL  A++ ++  GRGV++Y+RGHEGRGIGL HKL+AY LQD GRDTV+AN +LGLP D+R+YG GAQ+L DLG+R+M+L+TNNP+K VGL GYGL +  RVP+      EN RYL TKR +MGH + GL+
Sbjct:  248 DGEDVLVRVHSECLTGDVFGSLRCDCGPQLDAALEMVDQEGRGVVLYMRGHEGRGIGLMHKLQAYQLQDSGRDTVDANLDLGLPADARDYGTGAQILVDLGIRSMRLLTNNPAKRVGLDGYGLTITERVPMPLRANAENLRYLRTKRDRMGHDLVGLD 405          
BLAST of CX070215 vs. ExPASy Swiss-Prot
Match: RIBBA_SALAI (Riboflavin biosynthesis protein ribBA OS=Salinispora arenicola (strain CNS-205) GN=ribBA PE=3 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 5.317e-56
Identity = 103/153 (67.32%), Postives = 124/153 (81.05%), Query Frame = -2
Query:  392 DGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGHI 850
            DG+D+LVRVHSECLTGD+ GS RCDCG QL  A+ Q+   GRGV++Y+RGHEGRGIGL HKL+AY LQD GRDTV+AN +LGLP D+R+YG GAQ+L DLGVR+M+L+TNNP+K  GL+GYGL VAGRV L      EN RYL TKR +MGH+
Sbjct:  246 DGRDVLVRVHSECLTGDVLGSLRCDCGPQLNAALDQVAREGRGVVLYVRGHEGRGIGLLHKLQAYQLQDTGRDTVDANLDLGLPADARDYGTGAQILYDLGVRSMRLLTNNPAKRAGLEGYGLTVAGRVELPVRPHPENVRYLRTKRDRMGHL 398          
BLAST of CX070215 vs. ExPASy Swiss-Prot
Match: RIBBA_MYCPA (Riboflavin biosynthesis protein ribBA OS=Mycobacterium paratuberculosis GN=ribBA PE=3 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 2.021e-55
Identity = 103/152 (67.76%), Postives = 121/152 (79.61%), Query Frame = -2
Query:  395 DGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGH 850
            DG D+LVRVHSECLTGD+FGS RCDCG QL  AM  +   GRG+++Y+RGHEGRGIGL HKL+AY LQD G DTV+AN +LGLP D+R+YGIGAQ+L DLGVR+M+L+TNNP+K VGL GYGL +  RVPL      EN RYL TKR KMGH
Sbjct:  252 DGDDVLVRVHSECLTGDVFGSRRCDCGPQLDAAMAMVAREGRGIVLYMRGHEGRGIGLMHKLQAYQLQDAGEDTVDANLKLGLPADARDYGIGAQILVDLGVRSMRLLTNNPAKRVGLDGYGLHIIERVPLPVRTNAENIRYLMTKRDKMGH 403          
BLAST of CX070215 vs. ExPASy Swiss-Prot
Match: RIBBA_MYCA9 (Riboflavin biosynthesis protein ribBA OS=Mycobacterium abscessus (strain ATCC 19977 / DSM 44196) GN=ribBA PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 3.446e-55
Identity = 100/152 (65.79%), Postives = 122/152 (80.26%), Query Frame = -2
Query:  395 DGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGH 850
            DG D+LVRVHSECLTGD+FGS RCDCG QL  AM+ +   GRG+++Y+RGHEGRGIGL HKL+AY LQD G DTV+AN +LGLP D+R+YG+GAQ+L DLGV++M+L+TNNP+K VGL GYGL +  RVPL      EN RYL TKR +MGH
Sbjct:  252 DGNDVLVRVHSECLTGDVFGSRRCDCGPQLDAAMEMVAKEGRGIVLYMRGHEGRGIGLMHKLQAYQLQDAGEDTVDANLKLGLPADARDYGLGAQILVDLGVKSMRLLTNNPAKRVGLDGYGLHIIERVPLPVRANSENIRYLRTKRDRMGH 403          
BLAST of CX070215 vs. ExPASy Swiss-Prot
Match: RIBBA_MYCA1 (Riboflavin biosynthesis protein ribBA OS=Mycobacterium avium (strain 104) GN=ribBA PE=3 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 5.879e-55
Identity = 102/152 (67.11%), Postives = 120/152 (78.95%), Query Frame = -2
Query:  395 DGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGH 850
            DG D+LVRVHSECLTGD+FGS RCDCG QL  AM  +   GRG+++Y+RGHEGRGIGL HKL+AY LQD G DTV+AN +LG P D+R+YGIGAQ+L DLGVR+M+L+TNNP+K VGL GYGL +  RVPL      EN RYL TKR KMGH
Sbjct:  252 DGDDVLVRVHSECLTGDVFGSRRCDCGPQLDAAMAMVAREGRGIVLYMRGHEGRGIGLMHKLQAYQLQDAGEDTVDANLKLGFPADARDYGIGAQILVDLGVRSMRLLTNNPAKRVGLDGYGLHIIERVPLPVRANAENIRYLMTKRDKMGH 403          
BLAST of CX070215 vs. ExPASy Swiss-Prot
Match: RIBBA_MYCMM (Riboflavin biosynthesis protein ribBA OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=ribBA PE=3 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 7.678e-55
Identity = 103/152 (67.76%), Postives = 121/152 (79.61%), Query Frame = -2
Query:  395 DGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGH 850
            DG D+LVRVHSECLTGD+FGS RCDCG QL  AM  +   GRGV++Y+RGHEGRGIGL HKL+AY LQD G DTV+AN +LGLP D+R+YGIGAQ+L DLGVR+M+L+TNNP+K VGL GYGL +  RVPL      EN RYL TKR +MGH
Sbjct:  252 DGDDVLVRVHSECLTGDVFGSRRCDCGPQLDAAMAMVAREGRGVVLYMRGHEGRGIGLLHKLQAYQLQDAGDDTVDANLKLGLPADARDYGIGAQILVDLGVRSMRLLTNNPAKRVGLDGYGLHIIERVPLPVRANAENIRYLMTKRDRMGH 403          
BLAST of CX070215 vs. ExPASy Swiss-Prot
Match: RIBBA_MYCTU (Riboflavin biosynthesis protein ribBA OS=Mycobacterium tuberculosis GN=ribBA PE=3 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 1.003e-54
Identity = 102/152 (67.11%), Postives = 121/152 (79.61%), Query Frame = -2
Query:  395 DGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGH 850
            DG D+LVRVHSECLTGD+FGS RCDCG QL  A+  +   GRGV++Y+RGHEGRGIGL HKL+AY LQD G DTV+AN +LGLP D+R+YGIGAQ+L DLGVR+M+L+TNNP+K VGL GYGL +  RVPL      EN RYL TKR K+GH
Sbjct:  252 DGDDVLVRVHSECLTGDVFGSRRCDCGPQLDAALAMVAREGRGVVLYMRGHEGRGIGLMHKLQAYQLQDAGADTVDANLKLGLPADARDYGIGAQILVDLGVRSMRLLTNNPAKRVGLDGYGLHIIERVPLPVRANAENIRYLMTKRDKLGH 403          
BLAST of CX070215 vs. ExPASy Swiss-Prot
Match: RIBBA_MYCTA (Riboflavin biosynthesis protein ribBA OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=ribBA PE=3 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 1.003e-54
Identity = 102/152 (67.11%), Postives = 121/152 (79.61%), Query Frame = -2
Query:  395 DGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGRVPLITPIKKENKRYLETKRAKMGH 850
            DG D+LVRVHSECLTGD+FGS RCDCG QL  A+  +   GRGV++Y+RGHEGRGIGL HKL+AY LQD G DTV+AN +LGLP D+R+YGIGAQ+L DLGVR+M+L+TNNP+K VGL GYGL +  RVPL      EN RYL TKR K+GH
Sbjct:  252 DGDDVLVRVHSECLTGDVFGSRRCDCGPQLDAALAMVAREGRGVVLYMRGHEGRGIGLMHKLQAYQLQDAGADTVDANLKLGLPADARDYGIGAQILVDLGVRSMRLLTNNPAKRVGLDGYGLHIIERVPLPVRANAENIRYLMTKRDKLGH 403          
The following BLAST results are available for this feature:
BLAST of CX070215 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 215
Match NameE-valueIdentityDescription
RIBBA_ARATH2.621e-7986.14Riboflavin biosynthesis protein ribBA, chloroplast... [more]
RIBBA_SALTO3.682e-5768.39Riboflavin biosynthesis protein ribBA OS=Salinispo... [more]
RIBBA_NOCFA1.827e-5664.56Riboflavin biosynthesis protein ribBA OS=Nocardia ... [more]
RIBBA_SALAI5.317e-5667.32Riboflavin biosynthesis protein ribBA OS=Salinispo... [more]
RIBBA_MYCPA2.021e-5567.76Riboflavin biosynthesis protein ribBA OS=Mycobacte... [more]
RIBBA_MYCA93.446e-5565.79Riboflavin biosynthesis protein ribBA OS=Mycobacte... [more]
RIBBA_MYCA15.879e-5567.11Riboflavin biosynthesis protein ribBA OS=Mycobacte... [more]
RIBBA_MYCMM7.678e-5567.76Riboflavin biosynthesis protein ribBA OS=Mycobacte... [more]
RIBBA_MYCTU1.003e-5467.11Riboflavin biosynthesis protein ribBA OS=Mycobacte... [more]
RIBBA_MYCTA1.003e-5467.11Riboflavin biosynthesis protein ribBA OS=Mycobacte... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_15E03_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-15E03-J5-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070215 ID=CX070215; Name=CX070215; organism=Citrus sinensis; type=EST; length=851bp
TTTTTTTTTTTTTTTTTAGGAACTTAGCATGCCTATCAAAGGACAAGCCA
AAATAATTGGATTTCTTCTGCTAATTTACACCAGGGAGAAAAAGAATGAA
TCGCTCTTCATCAGTGCAATCAACATCAACATAGAAATTGTTTGAATTGC
TGCTTATGTATGCATACAATATTGAATTTGAATCAATAAATAAATTTTGT
ATTATGAGGTGATAATGCTTCCCTTTTTGTCATGCCAGAGTCTATCTTCA
ACTCGTACTTGAATCACGTGTCCAAACCAAGTAAATTAGTGCAGCTTACG
AGTCAGATACAGTATCAGATGAAGATTTGATACTCGGCTTACCGTTAACG
TTAATGAGATTTGTTAACCGGCCATTAGATTCTAACCCATAAATGTGACC
CATTTTAGCACGTTTAGTCTCCAGATATCTCTTGTTTTCCTTTTTAATGG
GAGTTATTAGGGGAACCCTTCCTGCAACTGCCAAACCATAACCCTTGAGT
CCAACATACTTCGAAGGGTTATTTGTCATCAGCTTCATTGTTCGAACACC
AAGATCCCTTAGCATCTGTGCACCAATGCCATATTCCCGTGAGTCAACAG
GCAATCCCAATTCCTCATTTGCTTCAACTGTATCACGCCCATCGTCCTGC
AAGTTATAAGCGCGAAGCTTGTGGCCTAAACCAATGCCCCTTCCCTCATG
ACCACGGAGATAAACTAATACACCCCTGCCAGCAGCCTCAATCTGCTGCA
TTGCAAGTGCAAGCTGATCACCACAATCACATCTGGCTGATCCAAATATA
TCTCCAGTGAGACACTCTGAGTGCACTCTCACAAGAATATCTTGTCCATC
C
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