CX070199

Overview
NameCX070199
Unique NameCX070199
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length769
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX070199 vs. ExPASy Swiss-Prot
Match: TMEDA_RABIT (Transmembrane emp24 domain-containing protein 10 OS=Oryctolagus cuniculus GN=TMED10 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.813e-16
Identity = 45/158 (28.48%), Postives = 86/158 (54.43%), Query Frame = -3
Query:  285 MTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTGVQAKDWSNVAKKGSVDVMELELKKLYDTVSSIHQEMFYLREREEEMQELNRVTNSRMAWFSGFSLFICIAVAGMQLWH 758
            +  G Y + + + G     +H   +++T + G+  +  +    G+FAFT  +   +  CF +          +  D + GV+AK++  +AK   +  +E+EL++L D   SI  +  Y+++REEEM++ N  TN+R+ +FS FS+F  I +A  Q+++
Sbjct:   53 LVTGAYEITDQSGGAGGLRTH---LKITDSAGHILYSKEDASKGKFAFTTEDYDMFEVCFESKGTGRIPDQLVILDMKHGVEAKNYEEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMKKREEEMRDTNESTNTRVLYFSIFSMFCLIGLATWQVFY 207          
BLAST of CX070199 vs. ExPASy Swiss-Prot
Match: TMEDA_HUMAN (Transmembrane emp24 domain-containing protein 10 OS=Homo sapiens GN=TMED10 PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 7.813e-16
Identity = 46/158 (29.11%), Postives = 86/158 (54.43%), Query Frame = -3
Query:  285 MTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTGVQAKDWSNVAKKGSVDVMELELKKLYDTVSSIHQEMFYLREREEEMQELNRVTNSRMAWFSGFSLFICIAVAGMQLWH 758
            +  G Y + + + G     SH   +++T + G+  +  +    G+FAFT  +   +  CF +          +  D + GV+AK++  +AK   +  +E+EL++L D   SI  +  Y+++REEEM++ N  TN+R+ +FS FS+F  I +A  Q+++
Sbjct:   53 LVTGAYEISDQSGGAGGLRSH---LKITDSAGHILYSKEDATKGKFAFTTEDYDMFEVCFESKGTGRIPDQLVILDMKHGVEAKNYEEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMKKREEEMRDTNESTNTRVLYFSIFSMFCLIGLATWQVFY 207          
BLAST of CX070199 vs. ExPASy Swiss-Prot
Match: TMEDA_RAT (Transmembrane emp24 domain-containing protein 10 OS=Rattus norvegicus GN=Tmed10 PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 1.020e-15
Identity = 45/158 (28.48%), Postives = 86/158 (54.43%), Query Frame = -3
Query:  285 MTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTGVQAKDWSNVAKKGSVDVMELELKKLYDTVSSIHQEMFYLREREEEMQELNRVTNSRMAWFSGFSLFICIAVAGMQLWH 758
            +  G Y + + + G     +H   +++T + G+  +  +    G+FAFT  +   +  CF +          +  D + GV+AK++  +AK   +  +E+EL++L D   SI  +  Y+++REEEM++ N  TN+R+ +FS FS+F  I +A  Q+++
Sbjct:   53 LVTGAYEITDQSGGAGGLRTH---LKITDSAGHILYAKEDATKGKFAFTTEDYDMFEVCFESKGTGRIPDQLVILDMKHGVEAKNYEEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMKKREEEMRDTNESTNTRVLYFSIFSMFCLIGLATWQVFY 207          
BLAST of CX070199 vs. ExPASy Swiss-Prot
Match: TMEDA_MOUSE (Transmembrane emp24 domain-containing protein 10 OS=Mus musculus GN=Tmed10 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.020e-15
Identity = 45/158 (28.48%), Postives = 86/158 (54.43%), Query Frame = -3
Query:  285 MTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTGVQAKDWSNVAKKGSVDVMELELKKLYDTVSSIHQEMFYLREREEEMQELNRVTNSRMAWFSGFSLFICIAVAGMQLWH 758
            +  G Y + + + G     +H   +++T + G+  +  +    G+FAFT  +   +  CF +          +  D + GV+AK++  +AK   +  +E+EL++L D   SI  +  Y+++REEEM++ N  TN+R+ +FS FS+F  I +A  Q+++
Sbjct:   53 LVTGAYEITDQSGGAGGLRTH---LKITDSAGHILYAKEDATKGKFAFTTEDYDMFEVCFESKGTGRIPDQLVILDMKHGVEAKNYEEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMKKREEEMRDTNESTNTRVLYFSIFSMFCLIGLATWQVFY 207          
BLAST of CX070199 vs. ExPASy Swiss-Prot
Match: TMEDA_BOVIN (Transmembrane emp24 domain-containing protein 10 OS=Bos taurus GN=TMED10 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.020e-15
Identity = 45/158 (28.48%), Postives = 86/158 (54.43%), Query Frame = -3
Query:  285 MTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTGVQAKDWSNVAKKGSVDVMELELKKLYDTVSSIHQEMFYLREREEEMQELNRVTNSRMAWFSGFSLFICIAVAGMQLWH 758
            +  G Y + + + G     +H   +++T + G+  +  +    G+FAFT  +   +  CF +          +  D + GV+AK++  +AK   +  +E+EL++L D   SI  +  Y+++REEEM++ N  TN+R+ +FS FS+F  I +A  Q+++
Sbjct:   53 LVTGAYEITDQSGGAGGLRTH---LKITDSAGHILYSKEDATKGKFAFTTEDYDMFEVCFESKGTGRIPDQLVILDMKHGVEAKNYEEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMKKREEEMRDTNESTNTRVLYFSIFSMFCLIGLATWQVFY 207          
BLAST of CX070199 vs. ExPASy Swiss-Prot
Match: TMEDA_PONAB (Transmembrane emp24 domain-containing protein 10 OS=Pongo abelii GN=TMED10 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.333e-15
Identity = 46/158 (29.11%), Postives = 85/158 (53.80%), Query Frame = -3
Query:  285 MTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTGVQAKDWSNVAKKGSVDVMELELKKLYDTVSSIHQEMFYLREREEEMQELNRVTNSRMAWFSGFSLFICIAVAGMQLWH 758
            +  G Y + + + G     SH   +++T + G+  +  +    G+FAFT  +   +  CF +          +  D + GV+AK++  +AK   +  +E+EL++L D   SI  +  Y+ +REEEM++ N  TN+R+ +FS FS+F  I +A  Q+++
Sbjct:   53 LVTGAYEISDQSGGAGGLRSH---LKITDSAGHILYSKEDATKGKFAFTTEDYDMFEVCFESKGTGRIPDQLVILDMKHGVEAKNYEEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMEKREEEMRDTNESTNTRVLYFSIFSMFCLIGLATWQVFY 207          
BLAST of CX070199 vs. ExPASy Swiss-Prot
Match: TMEDA_MESAU (Transmembrane protein Tmp21 OS=Mesocricetus auratus GN=TMED10 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.064e-15
Identity = 44/158 (27.85%), Postives = 85/158 (53.80%), Query Frame = -3
Query:  285 MTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTGVQAKDWSNVAKKGSVDVMELELKKLYDTVSSIHQEMFYLREREEEMQELNRVTNSRMAWFSGFSLFICIAVAGMQLWH 758
            +  G Y + + + G     +H   +++T + G+  +  +    G+FAFT  +   +  CF +          +  D + GV+AK++  +AK   +  +E+EL++L D   SI  +  Y+++REEEM++ N  TN+R+ +FS FS+   I +A  Q+++
Sbjct:   53 LVTGAYEITDQSGGAGGLRTH---LKITDSAGHILYAKEDATKGKFAFTTEDYDMFEVCFESKGTGRIPDQLVILDMKHGVEAKNYEEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMKKREEEMRDTNESTNTRVLYFSIFSMLCLIGLATWQVFY 207          
BLAST of CX070199 vs. ExPASy Swiss-Prot
Match: TMEDA_TAKRU (Transmembrane emp24 domain-containing protein 10 OS=Takifugu rubripes GN=tmed10 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.638e-15
Identity = 40/133 (30.08%), Postives = 77/133 (57.89%), Query Frame = -3
Query:  285 RVTSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTGVQAKDWSNVAKKGSVDVMELELKKLYDTVSSIHQEMFYLREREEEMQELNRVTNSRMAWFSGFSLFICIAVAGMQLWH 683
            ++T +  ++ +  +    G+FAFT  +   +  CF +          ++ D + GV+AK++  +AK   +  +E+EL++L D   SI  +  Y+++REEEM++ N  TN+R+ +FS FS+F  I +A  Q+++
Sbjct:   69 KITDSSSHTLYSKEDATKGKFAFTTEDYDMFEVCFESKCTGRVPDQLVNLDMKHGVEAKNYEEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMKKREEEMRDTNESTNTRVLYFSIFSMFCLIGLATWQVFY 201          
BLAST of CX070199 vs. ExPASy Swiss-Prot
Match: ERV25_CANAL (Endoplasmic reticulum vesicle protein 25 OS=Candida albicans GN=ERV25 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.072e-12
Identity = 45/158 (28.48%), Postives = 76/158 (48.10%), Query Frame = -3
Query:  288 VVNPNDGHPLPESHKLTVRVTSAYGNSY-HYADRVDSGQFAFTAAEAGDYMACF-------WAVDHSPQTTVTIDFDWRTGVQAKDWSNVAKKGSVDVMELELKKLYDTVSSIHQEMFYLREREEEMQELNRVTNSRMAWFSGFSLFICIAVAGMQLW 737
            VVN        +  +L ++VT + GN Y +  D V     AFT+        C        W+     QT  +++ D  +G  A+DW+ +     +  +E+ELK++      I +E+ YL+ REE M++ N  TNSR+ W   FS+ +  ++ G  +W
Sbjct:   48 VVNIKTDGSKGDGQRLDLKVTDSLGNEYRNKKDVVGHANVAFTSQHNAAIDICLTNYLDNKWSKHQ--QTVRSVELDIESGAAARDWNALQASEKLKPVEVELKRIESITEEIVEELRYLKAREERMRDTNESTNSRVKW---FSIVVIASLVGFGVW 200          
BLAST of CX070199 vs. ExPASy Swiss-Prot
Match: ERV25_NEUCR (Endoplasmic reticulum vesicle protein 25 OS=Neurospora crassa GN=erv-25 PE=3 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 8.939e-12
Identity = 40/142 (28.17%), Postives = 73/142 (51.41%), Query Frame = -3
Query:  285 LTVRVTSAYGNSYHYADRVDSGQ-FAFTAAEAGDYMACFW-----AVDHSPQTTVTIDFDWRTGVQAKDWSNVAKKGSVDVMELELKKLYDTVSSIHQEMFYLREREEEMQELNRVTNSRMAWFSGFSLFICIAVAGMQLWH 692
            + + ++ ++GN Y  A  +   Q   FT+     +  CF          +P+  V +D D   G  AKDWS +     +  +E +L+++ + V  +  EM YLR RE+++++ N  TN+R+ WF   + F+ IA+ G Q+ +
Sbjct:   65 VNMHISDSHGNEYGKAKDIAGEQRIVFTSHHDAAFDVCFENYLTAKYVENPRRHVELDID--IGADAKDWSAIQATEKLKPLETDLRRIEELVGEVVNEMDYLRAREQKLRDTNESTNNRVKWFGMATTFLLIALWGWQIMY 204          
The following BLAST results are available for this feature:
BLAST of CX070199 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
TMEDA_RABIT7.813e-1628.48Transmembrane emp24 domain-containing protein 10 O... [more]
TMEDA_HUMAN7.813e-1629.11Transmembrane emp24 domain-containing protein 10 O... [more]
TMEDA_RAT1.020e-1528.48Transmembrane emp24 domain-containing protein 10 O... [more]
TMEDA_MOUSE1.020e-1528.48Transmembrane emp24 domain-containing protein 10 O... [more]
TMEDA_BOVIN1.020e-1528.48Transmembrane emp24 domain-containing protein 10 O... [more]
TMEDA_PONAB1.333e-1529.11Transmembrane emp24 domain-containing protein 10 O... [more]
TMEDA_MESAU5.064e-1527.85Transmembrane protein Tmp21 OS=Mesocricetus auratu... [more]
TMEDA_TAKRU8.638e-1530.08Transmembrane emp24 domain-containing protein 10 O... [more]
ERV25_CANAL3.072e-1228.48Endoplasmic reticulum vesicle protein 25 OS=Candid... [more]
ERV25_NEUCR8.939e-1228.17Endoplasmic reticulum vesicle protein 25 OS=Neuros... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_15D04_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-15D04-H7-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070199 ID=CX070199; Name=CX070199; organism=Citrus sinensis; type=EST; length=769bp
TTTTTTTTTTTTTTTTTGGTGGAACAGTCGGGCGGACGGGCATCAATCAT
TTAAAACTCTGAGAATTGCACCAAGATATGTGAAGAAAGGAAAGAAGTAT
GCAAAAATGAATATTCAGGTTCCTGAAAAATTCCAATAAATCTAACCATA
TGATCTGAAAATTATTTTTCCTTCTAGAAGTAAAATTTTGGGGAAATTTT
TTACAAGAGCACCAAATAGAAAATTGCTTAATTTAATCGACGCTTCTCTT
ATATAAGCTTCTTTTTCTCAAAGAATGTTTTCAAGTGCCATAGTTGCATG
CCAGCAACAGCAATGCATATAAACAGCGAAAACCCACTAAACCAGGCCAT
CCTGGAGTTAGTAACACGGTTCAGCTCCTGCATTTCTTCTTCTCTTTCAC
GGAGATAAAACATCTCCTGGTGAATAGAACTAACAGTATCATACAACTTC
TTCAGCTCTAATTCCATGACGTCAACAGAACCTTTCTTTGCAACGTTAGA
CCAGTCCTTAGCTTGCACACCAGTCCTCCAATCAAAATCAATCGTCACCG
TTGTTTGCGGGCTATGATCAACGGCCCAAAAACAAGCCATGTAATCGCCA
GCCTCGGCAGCCGTAAACGCAAACTGACCCGAGTCAACTCGGTCCGCGTA
ATGATAACTATTCCCATAAGCCGACGTCACCCTGACGGTGAGTTTATGTG
ATTCGGGCAAGGGGTGGCCGTCGTTAGGGTTGACGACGTTATACTTCCCG
ACGGTCATGGAGTTGCTTT
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