CX070193

Overview
NameCX070193
Unique NameCX070193
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length788
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX070193 vs. ExPASy Swiss-Prot
Match: RR3_CITSI (30S ribosomal protein S3, chloroplastic OS=Citrus sinensis GN=rps3 PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.201e-43
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 1
Query:    1 AGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEKK 264
            AGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEKK
Sbjct:  132 AGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEKK 219          
BLAST of CX070193 vs. ExPASy Swiss-Prot
Match: RR3_TOBAC (30S ribosomal protein S3, chloroplastic OS=Nicotiana tabacum GN=rps3 PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.623e-40
Identity = 81/87 (93.10%), Postives = 85/87 (97.70%), Query Frame = 1
Query:    1 AGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 261
            AGQLKNRVSFRKAMKKAIELTEQADTKGIQ+QIAGR+DGKEIAR EWIREGRVPLQTI AKIDYCSYTVRTIYGVLGIKIWIF+DE+
Sbjct:  132 AGQLKNRVSFRKAMKKAIELTEQADTKGIQIQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCSYTVRTIYGVLGIKIWIFLDEE 218          
BLAST of CX070193 vs. ExPASy Swiss-Prot
Match: RR3_NICSY (30S ribosomal protein S3, chloroplastic OS=Nicotiana sylvestris GN=rps3 PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.623e-40
Identity = 81/87 (93.10%), Postives = 85/87 (97.70%), Query Frame = 1
Query:    1 AGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 261
            AGQLKNRVSFRKAMKKAIELTEQADTKGIQ+QIAGR+DGKEIAR EWIREGRVPLQTI AKIDYCSYTVRTIYGVLGIKIWIF+DE+
Sbjct:  132 AGQLKNRVSFRKAMKKAIELTEQADTKGIQIQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCSYTVRTIYGVLGIKIWIFLDEE 218          
BLAST of CX070193 vs. ExPASy Swiss-Prot
Match: RR3_GOSHI (30S ribosomal protein S3, chloroplastic OS=Gossypium hirsutum GN=rps3 PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.623e-40
Identity = 80/87 (91.95%), Postives = 85/87 (97.70%), Query Frame = 1
Query:    1 AGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 261
            AGQLKNRVSFRKAMKKAIELTEQADTKGIQ+QIAGR+DGKEIAR EWIREGRVPLQTIGAKI+YCSY VRTIYGVLGIKIWIF+DE+
Sbjct:  132 AGQLKNRVSFRKAMKKAIELTEQADTKGIQIQIAGRIDGKEIARVEWIREGRVPLQTIGAKIEYCSYRVRTIYGVLGIKIWIFIDEE 218          
BLAST of CX070193 vs. ExPASy Swiss-Prot
Match: RR3_GOSBA (30S ribosomal protein S3, chloroplastic OS=Gossypium barbadense GN=rps3 PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.623e-40
Identity = 80/87 (91.95%), Postives = 85/87 (97.70%), Query Frame = 1
Query:    1 AGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 261
            AGQLKNRVSFRKAMKKAIELTEQADTKGIQ+QIAGR+DGKEIAR EWIREGRVPLQTIGAKI+YCSY VRTIYGVLGIKIWIF+DE+
Sbjct:  132 AGQLKNRVSFRKAMKKAIELTEQADTKGIQIQIAGRIDGKEIARVEWIREGRVPLQTIGAKIEYCSYRVRTIYGVLGIKIWIFIDEE 218          
BLAST of CX070193 vs. ExPASy Swiss-Prot
Match: RR3_DRANE (30S ribosomal protein S3, chloroplastic OS=Draba nemorosa GN=rps3 PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.623e-40
Identity = 82/87 (94.25%), Postives = 85/87 (97.70%), Query Frame = 1
Query:    1 AGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 261
            AGQLKNRVSFRKAMKKAIELTEQA+TKGIQVQIAGR+DGKEIAR EWIREGRVPLQTI AKIDYCSYTVRTIYGVLGIKIWIFVDE+
Sbjct:  132 AGQLKNRVSFRKAMKKAIELTEQANTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIDAKIDYCSYTVRTIYGVLGIKIWIFVDEE 218          
BLAST of CX070193 vs. ExPASy Swiss-Prot
Match: RR3_ARAHI (30S ribosomal protein S3, chloroplastic OS=Arabis hirsuta GN=rps3 PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.623e-40
Identity = 82/87 (94.25%), Postives = 85/87 (97.70%), Query Frame = 1
Query:    1 AGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 261
            AGQLKNRVSFRKAMKKAIELTEQA+TKGIQVQIAGR+DGKEIAR EWIREGRVPLQTI AKIDYCSYTVRTIYGVLGIKIWIFVDE+
Sbjct:  132 AGQLKNRVSFRKAMKKAIELTEQANTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIDAKIDYCSYTVRTIYGVLGIKIWIFVDEE 218          
BLAST of CX070193 vs. ExPASy Swiss-Prot
Match: RR3_SOLTU (30S ribosomal protein S3, chloroplastic OS=Solanum tuberosum GN=rps3 PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 2.120e-40
Identity = 80/87 (91.95%), Postives = 85/87 (97.70%), Query Frame = 1
Query:    1 AGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 261
            AGQLKNRVSFRKAMKKAIELTEQADTKGIQ+QIAGR+DGKEIAR EWIREGRVPLQTI AKIDYCSYTVRTIYG+LGIKIWIF+DE+
Sbjct:  132 AGQLKNRVSFRKAMKKAIELTEQADTKGIQIQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCSYTVRTIYGILGIKIWIFLDEE 218          
BLAST of CX070193 vs. ExPASy Swiss-Prot
Match: RR3_SOLLC (30S ribosomal protein S3, chloroplastic OS=Solanum lycopersicum GN=rps3 PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 2.120e-40
Identity = 80/87 (91.95%), Postives = 85/87 (97.70%), Query Frame = 1
Query:    1 AGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 261
            AGQLKNRVSFRKAMKKAIELTEQADTKGIQ+QIAGR+DGKEIAR EWIREGRVPLQTI AKIDYCSYTVRTIYG+LGIKIWIF+DE+
Sbjct:  132 AGQLKNRVSFRKAMKKAIELTEQADTKGIQIQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCSYTVRTIYGILGIKIWIFLDEE 218          
BLAST of CX070193 vs. ExPASy Swiss-Prot
Match: RR3_SOLBU (30S ribosomal protein S3, chloroplastic OS=Solanum bulbocastanum GN=rps3 PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 2.120e-40
Identity = 80/87 (91.95%), Postives = 85/87 (97.70%), Query Frame = 1
Query:    1 AGQLKNRVSFRKAMKKAIELTEQADTKGIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 261
            AGQLKNRVSFRKAMKKAIELTEQADTKGIQ+QIAGR+DGKEIAR EWIREGRVPLQTI AKIDYCSYTVRTIYG+LGIKIWIF+DE+
Sbjct:  132 AGQLKNRVSFRKAMKKAIELTEQADTKGIQIQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCSYTVRTIYGILGIKIWIFLDEE 218          
The following BLAST results are available for this feature:
BLAST of CX070193 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RR3_CITSI1.201e-43100.0030S ribosomal protein S3, chloroplastic OS=Citrus ... [more]
RR3_TOBAC1.623e-4093.1030S ribosomal protein S3, chloroplastic OS=Nicotia... [more]
RR3_NICSY1.623e-4093.1030S ribosomal protein S3, chloroplastic OS=Nicotia... [more]
RR3_GOSHI1.623e-4091.9530S ribosomal protein S3, chloroplastic OS=Gossypi... [more]
RR3_GOSBA1.623e-4091.9530S ribosomal protein S3, chloroplastic OS=Gossypi... [more]
RR3_DRANE1.623e-4094.2530S ribosomal protein S3, chloroplastic OS=Draba n... [more]
RR3_ARAHI1.623e-4094.2530S ribosomal protein S3, chloroplastic OS=Arabis ... [more]
RR3_SOLTU2.120e-4091.9530S ribosomal protein S3, chloroplastic OS=Solanum... [more]
RR3_SOLLC2.120e-4091.9530S ribosomal protein S3, chloroplastic OS=Solanum... [more]
RR3_SOLBU2.120e-4091.9530S ribosomal protein S3, chloroplastic OS=Solanum... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_15D01_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-15D01-H1-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070193 ID=CX070193; Name=CX070193; organism=Citrus sinensis; type=EST; length=788bp
GCCGGACAATTAAAAAATAGAGTTTCTTTTCGAAAAGCAATGAAAAAAGC
TATTGAATTAACGGAACAGGCCGATACAAAAGGAATTCAAGTACAAATTG
CAGGGCGTCTTGACGGAAAAGAAATTGCGCGCGCCGAATGGATCAGAGAA
GGTAGAGTTCCTCTACAAACCATTGGAGCTAAAATTGATTATTGTTCCTA
TACGGTTCGAACTATCTACGGGGTATTGGGAATCAAAATTTGGATATTTG
TAGACGAAAAAAAATAAGAGTTTACGGGTCTTTAGAGCCCCCCCATTAAT
GGAAATAAACCAAACAAAGAACGAGCTCTTTTTATCTTCAATCAAAACAA
AAATGAGAAATTCCGCAATTCTATAGGGTTGAATAAAAATTCGATTGATT
TTTTTTTTTTTATATAATTGCTATGCTTAGTGTGCGACTCGTTGGTTTTT
TTTAGGGCTAGGATTCCAAAAAATGGACCGTCCTGTAGTATGAACTAATA
ACTATAGCACTAATAACCAACTCATTGCTTCGTATTATCTGAATCCAAAG
AACCAGTCAAGATATAATATAGTGGTCATATCGTTGTAGCAACTGAAATT
TGCATAACATAAAAACCCAATCTGATTGTAGGTTGTGAAGTTCGAAGTTG
TGAAAGAAAATCGAAAAGCATGCGGATAAATGGAAGGATGAGAGAAAGAG
AGAAAGAAAATATCAATGATATAAGATTCCAATATGTAAGGTCTGTAAGT
CATCTCATAAAAAACAGTGTAATATAGCATCAATAATG
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