CX070184

Overview
NameCX070184
Unique NameCX070184
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length690
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX070184 vs. ExPASy Swiss-Prot
Match: PTBP1_ARATH (Polypyrimidine tract-binding protein homolog 1 OS=Arabidopsis thaliana GN=PTB PE=2 SV=1)

HSP 1 Score: 48.9062 bits (115), Expect = 1.116e-13
Identity = 20/23 (86.96%), Postives = 22/23 (95.65%), Query Frame = -1 
Query:  619 DITTAAVAKESLEGHCIYDGGYC 687
            DI TAA+AKE+LEGHCIYDGGYC
Sbjct:  291 DIPTAAMAKEALEGHCIYDGGYC 313

HSP 2 Score: 46.595 bits (109), Expect = 1.116e-13
Identity = 24/45 (53.33%), Postives = 31/45 (68.89%), Query Frame = -2 
Query:  492 AYSDKSRDYTVQDQTLLATQQIPSV--PAAPSVWQSHQAAPMYSG 620
            A+SDKSRDYT+ D +LL  Q+ P+V   A P+ WQ+ QA   YSG
Sbjct:  329 AFSDKSRDYTLPDLSLLVAQKGPAVSGSAPPAGWQNPQAQSQYSG 373
The following BLAST results are available for this feature:
BLAST of CX070184 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PTBP1_ARATH1.116e-1386.96Polypyrimidine tract-binding protein homolog 1 OS=... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_15C08_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-15C08-F15-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070184 ID=CX070184; Name=CX070184; organism=Citrus sinensis; type=EST; length=690bp
TTTTTTTTTTTTATTCTGAACTGAAAAAGCTCATTTCATTGAGTATCAAC
AAAAGATGTCATTTGGCAAACTTCAGCGGACACAATCTACAAGCATAAAA
AAGAACAAAAATTAAGAATTTATGTCTCTCCCAATCAACGTGCAGGCTTT
GAAGAATTTTTTGAGTCAATTTCACCAGAACAATGCGAAAAGTTCATTTT
AAGTAAATAAGGAAAAGATACAACTCATCTAACGTAGTAAGGAGGATGGC
CTGGTGGTGAAGCTCCACCAGGTCGGACAGGCGGAACTCCTGGCTGTGTC
AATGACAAGGGTGAGGAACCAGTGGGTGTTGGAGCAGTGGCATAAGCGAA
AACCGGAGATTGTGGGTATGTTTGACCAGGAAAAGGTCCTGAAGCCGACA
CATAGGCTGCGGGTCCGGCCTGTGCAGATGGGTTCCAAGACGGCACTTGT
CCAGGAGGAACTTGACCAGGCACTGCAGTTGCATACTCACTTCCACTATA
CATTGGAGCCGCCTGATGACTTTGCCATACCGATGGAGCAGCAGGGACGC
TGGGGATCTGTTGTGTAGCGAGCAAAGTCTGATCTTGGACTGTATAATCT
CTACTTTTATCACTGTAAGCAATAGCCACCATCATAAATGCAGTGTCCCT
CCAAAGATTCTTTTGCAACTGCTGCAGTTGTAATGTCTTT
back to top