CX070183

Overview
NameCX070183
Unique NameCX070183
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length690
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX070183 vs. ExPASy Swiss-Prot
Match: PTBP1_ARATH (Polypyrimidine tract-binding protein homolog 1 OS=Arabidopsis thaliana GN=PTB PE=2 SV=1)

HSP 1 Score: 48.9062 bits (115), Expect = 1.119e-13
Identity = 20/23 (86.96%), Postives = 22/23 (95.65%), Query Frame = 2 
Query:    5 DITTAAVAKESLEGHCIYDGGYC 73
            DI TAA+AKE+LEGHCIYDGGYC
Sbjct:  291 DIPTAAMAKEALEGHCIYDGGYC 313

HSP 2 Score: 46.595 bits (109), Expect = 1.119e-13
Identity = 24/45 (53.33%), Postives = 31/45 (68.89%), Query Frame = 3 
Query:   72 AYSDKSRDYTVQDQTLLATQQIPSV--PAAPSVWQSHQAAPMYSG 200
            A+SDKSRDYT+ D +LL  Q+ P+V   A P+ WQ+ QA   YSG
Sbjct:  329 AFSDKSRDYTLPDLSLLVAQKGPAVSGSAPPAGWQNPQAQSQYSG 373
The following BLAST results are available for this feature:
BLAST of CX070183 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PTBP1_ARATH1.119e-1386.96Polypyrimidine tract-binding protein homolog 1 OS=... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_15C08_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-15C08-F15-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070183 ID=CX070183; Name=CX070183; organism=Citrus sinensis; type=EST; length=690bp
CAAAGACATTACAACTGCAGCAGTTGCAAAAGAATCTTTGGAGGGACACT
GCATTTATGATGGTGGCTATTGCTTACAGTGATAAAAGTAGAGATTATAC
AGTCCAAGATCAGACTTTGCTCGCTACACAACAGATCCCCAGCGTCCCTG
CTGCTCCATCGGTATGGCAAAGTCATCAGGCGGCTCCAATGTATAGTGGA
AGTGAGTATGCAACTGCAGTGCCTGGTCAAGTTCCTCCTGGACAAGTGCC
GTCTTGGAACCCATCTGCACAGGCCGGACCCGCAGCCTATGTGTCGGCTT
CAGGACCTTTTCCTGGTCAAACATACCCACAATCTCCGGTTTTCGCTTAT
GCCACTGCTCCAACACCCACTGGTTCCTCACCCTTGTCATTGACACAGCC
AGGAGTTCCGCCTGTCCGACCTGGTGGAGCTTCACCACCAGGCCATCCTC
CTTACTACGTTAGATGAGTTGTATCTTTTCCTTATTTACTTAAAATGAAC
TTTTCGCATTGTTCTGGTGAAATTGACTCAAAAAATTCTTCAAAGCCTGC
ACGTTGATTGGGAGAGACATAAATTCTTAATTTTTGTTCTTTTTTATGCT
TGTAGATTGTGTCCGCTGAAGTTTGCCAAATGACATCTTTTGTTGATACT
CAATGAAATGAGCTTTTTCAGTTCAGAATAAAAAAAAAAA
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