CX070179

Overview
NameCX070179
Unique NameCX070179
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length515
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX070179 vs. ExPASy Swiss-Prot
Match: GSH1_SOLLC (Glutamate--cysteine ligase, chloroplastic OS=Solanum lycopersicum GN=GSH1 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.128e-13
Identity = 33/39 (84.62%), Postives = 38/39 (97.44%), Query Frame = 2 
Query:    2 LNEVAEVVRTGVTPAEKLLDMYHGKWRESVDPVFEELLY 118
            LNEVAEVV+TGVTPAEKLL++YHGKW +SVDP+FEELLY
Sbjct:  485 LNEVAEVVKTGVTPAEKLLELYHGKWGQSVDPIFEELLY 523
[Close]
BLAST of CX070179 vs. ExPASy Swiss-Prot
Match: GSH1_TOBAC (Glutamate--cysteine ligase, chloroplastic OS=Nicotiana tabacum GN=GSH1 PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 3.630e-13
Identity = 34/39 (87.18%), Postives = 36/39 (92.31%), Query Frame = 2 
Query:    2 LNEVAEVVRTGVTPAEKLLDMYHGKWRESVDPVFEELLY 118
            LNEV EVVRTGVTPAEKLL++YHGKW  SVDPVFEELLY
Sbjct:  484 LNEVTEVVRTGVTPAEKLLELYHGKWGRSVDPVFEELLY 522
[Close]
BLAST of CX070179 vs. ExPASy Swiss-Prot
Match: GSH1_MEDTR (Glutamate--cysteine ligase, chloroplastic OS=Medicago truncatula GN=GSH1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.168e-11
Identity = 31/39 (79.49%), Postives = 36/39 (92.31%), Query Frame = 2 
Query:    2 LNEVAEVVRTGVTPAEKLLDMYHGKWRESVDPVFEELLY 118
            LN VAEVVRTGVTPAE+LL++YHGKW +SVD VF+ELLY
Sbjct:  470 LNAVAEVVRTGVTPAERLLELYHGKWEQSVDHVFDELLY 508
[Close]
BLAST of CX070179 vs. ExPASy Swiss-Prot
Match: GSH1_ARATH (Glutamate--cysteine ligase, chloroplastic OS=Arabidopsis thaliana GN=GSH1 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 1.525e-11
Identity = 32/39 (82.05%), Postives = 36/39 (92.31%), Query Frame = 2 
Query:    2 LNEVAEVVRTGVTPAEKLLDMYHGKWRESVDPVFEELLY 118
            LN V EVVRTGVTPAEKLL+MY+G+W +SVDPVFEELLY
Sbjct:  484 LNAVDEVVRTGVTPAEKLLEMYNGEWGQSVDPVFEELLY 522
[Close]
BLAST of CX070179 vs. ExPASy Swiss-Prot
Match: GSH1_BRAJU (Glutamate--cysteine ligase, chloroplastic OS=Brassica juncea GN=GSH1 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.568e-11
Identity = 30/39 (76.92%), Postives = 35/39 (89.74%), Query Frame = 2 
Query:    2 LNEVAEVVRTGVTPAEKLLDMYHGKWRESVDPVFEELLY 118
            LN V EVVRTGVTPAE LL+MY+G+W +SVDPVF+ELLY
Sbjct:  476 LNAVTEVVRTGVTPAENLLEMYNGEWGQSVDPVFQELLY 514
The following BLAST results are available for this feature:
BLAST of CX070179 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
GSH1_SOLLC2.128e-1384.62Glutamate--cysteine ligase, chloroplastic OS=Solan... [more]
GSH1_TOBAC3.630e-1387.18Glutamate--cysteine ligase, chloroplastic OS=Nicot... [more]
GSH1_MEDTR1.168e-1179.49Glutamate--cysteine ligase, chloroplastic OS=Medic... [more]
GSH1_ARATH1.525e-1182.05Glutamate--cysteine ligase, chloroplastic OS=Arabi... [more]
GSH1_BRAJU7.568e-1176.92Glutamate--cysteine ligase, chloroplastic OS=Brass... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_15C06_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-15C06-F11-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070179 ID=CX070179; Name=CX070179; organism=Citrus sinensis; type=EST; length=515bp
CTTGAATGAGGTGGCTGAGGTAGTCAGAACAGGGGTGACACCGGCGGAAA
AACTATTGGACATGTATCATGGGAAGTGGCGAGAGTCAGTAGATCCTGTT
TTTGAGGAGCTACTTTATTAAGATGACCGTTTGTGTATGCATGCTTGTGG
ACTCTGGTAGATTGATTGAGACTAAAATCATCCAAACGTAAAAGCACTAA
AGCATACTTGGGACATTGGATTCCAACAAGTAGCGGGCTGGAGGGGCCAA
AACAATACTCAATGCTCGTATGGTCATGGAGGACAGACTGACACTCAATA
ATATGAATCTTCCTGCTGAGCCAACTAATCTGATTCATAAACTATACATG
CAATCTTTTATTGATTTAGGTGCTGTAACTACCTGATCAGCATCGACATG
CCCAAATTATCCTTTTAATGTCTTATTATCTAAATTGATCATGGTTTACT
AACTTGTCCAAAGAAAGTATCAAATAACACGCAGCTTTTACTTATCTTAG
GCATCATAAACTCCT
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