CX070140

Overview
NameCX070140
Unique NameCX070140
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length778
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX070140 vs. ExPASy Swiss-Prot
Match: STS3_ARATH (Strictosidine synthase 3 OS=Arabidopsis thaliana GN=SS3 PE=2 SV=2)

HSP 1 Score: 184.111 bits (466), Expect = 7.368e-46
Identity = 108/260 (41.54%), Postives = 142/260 (54.62%), Query Frame = 1
Query:    1 IIFIFPLVFPCVILSSK--SYQQLQLPGV-VGPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDKSGRLLKYDPLKKNVTVMYNGLSFPNGVXXXXXXXXXXXXXXXTLKILRFWLQGERTTYTPQLFAEMPRFPDNIKS-DSKGEFWIA 768
            I  +  L F   +LS+K  S+Q+L +PG   GPE+ AFD  G+G Y GV+ G+ILK+     G+ +FA         +CDG+  TT    CGRP GI FN  T DLY+ADA  GL V+   GG A+++A S GG PF F + LD+DP TG+VYFT  S  F  R    ++AT D +G+  KYDP KK VTV+  GLS   G                   I R+W++G +   T + F      PDNIK   S G FW+A
Sbjct:    9 ISLLLLLSFSSSVLSTKKSSFQKLPVPGNRTGPEAFAFDSTGKGFYTGVTGGKILKY-LPKKGYVDFAQITNSSKSSLCDGALGTTNVEKCGRPAGIAFNTKTGDLYVADAALGLHVIPRRGGLAKKIADSVGGKPFLFLDGLDVDPTTGVVYFTSFSSTFGPRDVLKAVATKDSTGKFFKYDPSKKVVTVLMEGLSGSAGCAVSSDGSFVLVGQFTKSNIKRYWIKGSKAG-TSEDFTNSVSNPDNIKRIGSTGNFWVA 266          
BLAST of CX070140 vs. ExPASy Swiss-Prot
Match: STS1_ARATH (Strictosidine synthase 1 OS=Arabidopsis thaliana GN=SS1 PE=2 SV=2)

HSP 1 Score: 171.014 bits (432), Expect = 6.455e-42
Identity = 99/247 (40.08%), Postives = 131/247 (53.04%), Query Frame = 1
Query:   34 VILSSKSYQQLQLPGV-VGPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDKSGRLLKYDPLKKNVTVMYNGLSFPNGVXXXXXXXXXXXXXXXTLKILRFWLQGERTTYTPQLFAEMPRFPDNIKS-DSKGEFWIA 768
            V     S+Q+L +P    GPE+ AFD  G+G Y GVS G+ILK+    +G+ +FA          CDG+  T L   CGRP GI FN  T DLY+ADA  GL V+ P GG A ++  S  G PF+F + LD+DP TG+VYFT  S  F   Q  +++   D +G+L KYDP  K VTV+  GLS   G                   I R+W++G +   + + F      PDNIK   S G FW+A
Sbjct:   20 VFSDDASFQKLPVPETRSGPEAFAFDSTGKGFYTGVSGGKILKY-LPETGYVDFAQITESSNSSWCDGTIGTALAGRCGRPAGIAFNEKTGDLYVADAPLGLHVISPAGGLATKITDSVDGKPFKFLDGLDVDPTTGVVYFTSFSSRFSPIQVLIALGLKDATGKLYKYDPSTKVVTVLMEGLSGSAGCAVSSDGSFVLVSQFTKSNIKRYWIKGPKAG-SSEDFTNSVSNPDNIKRIGSTGNFWVA 264          
BLAST of CX070140 vs. ExPASy Swiss-Prot
Match: STSY_RAUSE (Strictosidine synthase OS=Rauvolfia serpentina GN=STR1 PE=1 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.101e-41
Identity = 85/227 (37.44%), Postives = 126/227 (55.51%), Query Frame = 1
Query:   88 PESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDKSGRLLKYDPLKKNVTVMYNGLSFPNGVXXXXXXXXXXXXXXXTLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIA 768
            P S  FD   +G Y  V DGR++K++  NSG+ +FA  +P+  +  C+ ST+    PLCGR   I +N     LYI D Y+ L VVG  GG A QLA+S  G+PF++   + +D  TGIVYFTD S  +  R     + T DK+GRL+KYDP  K  T++   L  P G                + +I+++WL+G +   T ++  ++P  P NIK ++ G FW++
Sbjct:   43 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKG-TAEVLVKIPN-PGNIKRNADGHFWVS 267          
BLAST of CX070140 vs. ExPASy Swiss-Prot
Match: STSY_RAUMA (Strictosidine synthase (Fragment) OS=Rauvolfia mannii GN=STR1 PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.101e-41
Identity = 85/227 (37.44%), Postives = 126/227 (55.51%), Query Frame = 1
Query:   88 PESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDKSGRLLKYDPLKKNVTVMYNGLSFPNGVXXXXXXXXXXXXXXXTLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIA 768
            P S  FD   +G Y  V DGR++K++  NSG+ +FA  +P+  +  C+ ST+    PLCGR   I +N     LYI D Y+ L VVG  GG A QLA+S  G+PF++   + +D  TGIVYFTD S  +  R     + T DK+GRL+KYDP  K  T++   L  P G                + +I+++WL+G +   T ++  ++P  P NIK ++ G FW++
Sbjct:   41 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKG-TAEVLVKIPN-PGNIKRNADGHFWVS 265          
BLAST of CX070140 vs. ExPASy Swiss-Prot
Match: STSY_CATRO (Strictosidine synthase OS=Catharanthus roseus GN=STR1 PE=1 SV=2)

HSP 1 Score: 156.762 bits (395), Expect = 1.260e-37
Identity = 83/229 (36.24%), Postives = 126/229 (55.02%), Query Frame = 1
Query:   88 PESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYFGLMVVGPNGGQAQQLASSAGGIPFRFTNDLDIDPNTGIVYFTD-SSIYFQRRQYFMSIA-TGDKSGRLLKYDPLKKNVTVMYNGLSFPNGVXXXXXXXXXXXXXXXTLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIA 768
            P +  FD   +G Y  V DGR++K++  NSG+T+FA  +P   +  C+ ST+    PLCGR   I ++     +YI D ++ L VVG  GG A QLA+S  G+PF++   + +D  TGIVYFTD SSI+    +    I  T D++GRL+KYDP  K  T++   L  P G                + +I+++WL+G +   + +    +P  P NIK +S G FW++
Sbjct:   47 PNAFTFDSTDKGFYTSVQDGRVIKYEGPNSGFTDFAYASPFWNKAFCENSTDPEKRPLCGRTYDISYDYKNSQMYIVDGHYHLCVVGKEGGYATQLATSVQGVPFKWLYAVTVDQRTGIVYFTDVSSIHDDSPEGVEEIMNTSDRTGRLMKYDPSTKETTLLLKELHVPGGAEISADGSFVVVAEFLSNRIVKYWLEGPKKG-SAEFLVTIPN-PGNIKRNSDGHFWVS 273          
BLAST of CX070140 vs. ExPASy Swiss-Prot
Match: APMAP_SALSA (Adipocyte plasma membrane-associated protein OS=Salmo salar GN=apmap PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.491e-30
Identity = 88/243 (36.21%), Postives = 118/243 (48.56%), Query Frame = 1
Query:   58 QQLQLPGVVGPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYFGLMVVGPNGGQAQQLASSA---GGIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDKSGRLLKYDPLKKNVTVMYNGLSFPNGVXXXXXXXXXXXXXXXTLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNS 777
            Q+L    +VGPES+A    G+  Y G +DG+I+K +  +       T      +  CDGS     EP CGRPLGI+  P    L++ADAY GL  V P  G+   L S+    GG    F NDLD+  +   VYFTDSS  +QRR Y   I      GR+L+YD   K VTV+   L F NG+                 +I R  + G            +P FPDNI+  S G +W+AM++
Sbjct:   91 QRLFEDQLVGPESIANF--GDLIYTGTADGKIVKIEGKS------ITVIARLGKPPCDGSREQ--EPSCGRPLGIRVGP-NGTLFVADAYLGLFKVNPVTGEVTNLVSAGQMVGGRRLSFVNDLDVTQDGRKVYFTDSSSRWQRRDYLHLIMEATADGRVLEYDTETKEVTVLMENLRFANGIQLFPDEESVLVAETTMARIRRVHVSGLNKGGMDTFVDNLPGFPDNIRRSSSGGYWVAMSA 322          
BLAST of CX070140 vs. ExPASy Swiss-Prot
Match: APMAP_CHICK (Adipocyte plasma membrane-associated protein OS=Gallus gallus GN=APMAP PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 6.266e-29
Identity = 85/235 (36.17%), Postives = 115/235 (48.94%), Query Frame = 1
Query:   79 VVGPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTL-EPLCGRPLGIKFNPVTCDLYIADAYFGLMVVGPNGGQAQQLASSAG---GIPFRFTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDKSGRLLKYDPLKKNVTVMYNGLSFPNGVXXXXXXXXXXXXXXXTLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAM 771
            +VGPES+     G+  + G +DG+ILK +       E  T A      I  G   T   EP CGRPLGI+  P    L++ADAY+GL  V P  G+ + L S+     G    F NDL +  +   +YFTDSS  +QRR +   +  G   GRLL+YD + K V V+  GL FPNGV                 +I R+++ G            MP  PDNI+  S G +W+AM
Sbjct:   98 LVGPESIVNI--GDVLFTGTADGKILKIEDG-----EVQTVA-----RIGHGPCGTPEDEPTCGRPLGIRVGPNNT-LFVADAYYGLYEVNPGTGETKMLVSTKTLIEGQKLSFLNDLTVTQDGRKIYFTDSSSKWQRRDFLFLVMEGTDDGRLLEYDTVTKEVKVLMVGLRFPNGVQLSPAEDFVLVLETAMARIRRYYVSGLMKGGADMFVENMPGLPDNIRLSSSGGYWVAM 319          
BLAST of CX070140 vs. ExPASy Swiss-Prot
Match: APMAP_DANRE (Adipocyte plasma membrane-associated protein OS=Danio rerio GN=apmap PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.381e-28
Identity = 85/236 (36.02%), Postives = 113/236 (47.88%), Query Frame = 1
Query:   79 VVGPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYFGLMVVGPNGGQAQQLASSAGGIPFR---FTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDKSGRLLKYDPLKKNVTVMYNGLSFPNGVXXXXXXXXXXXXXXXTLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNS 777
            +VGPESLA    G+  Y G +DG+I+K +  N          P  +RE          E  CGRPLGI+  P    L++ADAY GL  V P  G+ + L S+   I  R   F NDLD+  +   VYFTDSS  +QRR +   I      GR+L+YD   K V VM   L FPNG+                 +I R  + G            +P FPDNI+  S G +W+AM++
Sbjct:   98 LVGPESLANI--GDVFYTGTADGKIVKIEGRNIHVLATIGKPPCGSREH---------EHTCGRPLGIRVGP-NGTLFVADAYLGLFEVNPVTGEVKSLVSTEKRIAGRRLGFVNDLDVTQDGKKVYFTDSSSRWQRRDFMHLIMEATADGRVLEYDTETKEVNVMMENLRFPNGIQLFPDEESVLVAETTMARIKRVHVSGLNKGGMDTFIENLPGFPDNIRRSSSGGYWVAMSA 321          
BLAST of CX070140 vs. ExPASy Swiss-Prot
Match: APMAP_HUMAN (Adipocyte plasma membrane-associated protein OS=Homo sapiens GN=APMAP PE=1 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 5.305e-28
Identity = 80/236 (33.90%), Postives = 117/236 (49.58%), Query Frame = 1
Query:   79 VVGPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYFGLMVVGPNGGQAQQLASSAGGIPFR---FTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDKSGRLLKYDPLKKNVTVMYNGLSFPNGVXXXXXXXXXXXXXXXTLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAMNS 777
            +VGPES+A    G+  + G +DGR++K +           + P + R+          EP+CGRPLGI+  P    L++ADAY GL  V P   + + L SS   I  +   F NDL +  +   +YFTDSS  +QRR Y + +  G   GRLL+YD + + V V+ + L FPNGV                 +I R ++ G            MP FPDNI+  S G +W+ M++
Sbjct:   99 LVGPESIAHI--GDVMFTGTADGRVVKLENGEIETIARFGSGPCKTRDD---------EPVCGRPLGIRAGP-NGTLFVADAYKGLFEVNPWKREVKLLLSSETPIEGKNMSFVNDLTVTQDGRKIYFTDSSSKWQRRDYLLLVMEGTDDGRLLEYDTVTREVKVLLDQLRFPNGVQLSPAEDFVLVAETTMARIRRVYVSGLMKGGADLFVENMPGFPDNIRPSSSGGYWVGMST 322          
BLAST of CX070140 vs. ExPASy Swiss-Prot
Match: APMAP_BOVIN (Adipocyte plasma membrane-associated protein OS=Bos taurus GN=APMAP PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.928e-28
Identity = 81/234 (34.62%), Postives = 116/234 (49.57%), Query Frame = 1
Query:   79 VVGPESLAFDCNGEGPYVGVSDGRILKWKAANSGWTEFATTAPHRAREICDGSTNTTLEPLCGRPLGIKFNPVTCDLYIADAYFGLMVVGPNGGQAQQLASSAGGIPFR---FTNDLDIDPNTGIVYFTDSSIYFQRRQYFMSIATGDKSGRLLKYDPLKKNVTVMYNGLSFPNGVXXXXXXXXXXXXXXXTLKILRFWLQGERTTYTPQLFAEMPRFPDNIKSDSKGEFWIAM 771
            +VGPES+A    G+  + G +DGR++K +           + P + R+          EP CGRPLGI+  P    L++ DAY GL  V P   + + L SS   I  R   F NDL +  +   +YFTDSS  +QRR Y + +  G   GRLL+YD   K V V+ + L FPNGV                ++I RF++ G            +P FPDNI++ S G +W++M
Sbjct:   98 LVGPESIANI--GDVMFTGTADGRVVKLENGEVETIARFGSGPCKTRDD---------EPACGRPLGIRAGP-NGTLFVVDAYKGLFEVNPWKREVKLLLSSETPIEGRKMSFLNDLTVTRDGRKIYFTDSSSKWQRRDYLLLLMEGTDDGRLLEYDTQTKEVKVLLDHLRFPNGVQLSPAEDFVLVVELAMVRIRRFYVSGLMKGGADVFVENLPGFPDNIRASSSGGYWVSM 319          
The following BLAST results are available for this feature:
BLAST of CX070140 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
STS3_ARATH7.368e-4641.54Strictosidine synthase 3 OS=Arabidopsis thaliana G... [more]
STS1_ARATH6.455e-4240.08Strictosidine synthase 1 OS=Arabidopsis thaliana G... [more]
STSY_RAUSE1.101e-4137.44Strictosidine synthase OS=Rauvolfia serpentina GN=... [more]
STSY_RAUMA1.101e-4137.44Strictosidine synthase (Fragment) OS=Rauvolfia man... [more]
STSY_CATRO1.260e-3736.24Strictosidine synthase OS=Catharanthus roseus GN=S... [more]
APMAP_SALSA1.491e-3036.21Adipocyte plasma membrane-associated protein OS=Sa... [more]
APMAP_CHICK6.266e-2936.17Adipocyte plasma membrane-associated protein OS=Ga... [more]
APMAP_DANRE2.381e-2836.02Adipocyte plasma membrane-associated protein OS=Da... [more]
APMAP_HUMAN5.305e-2833.90Adipocyte plasma membrane-associated protein OS=Ho... [more]
APMAP_BOVIN6.928e-2834.62Adipocyte plasma membrane-associated protein OS=Bo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_15A04_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-15A04-B7-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070140 ID=CX070140; Name=CX070140; organism=Citrus sinensis; type=EST; length=778bp
ATTATTTTCATTTTCCCCCTGGTTTTTCCTTGTGTCATCTTATCCTCCAA
AAGCTATCAGCAGCTTCAGCTTCCCGGGGTGGTTGGTCCCGAAAGCCTTG
CTTTCGACTGCAACGGCGAAGGACCGTACGTCGGTGTTTCCGACGGTAGA
ATCCTTAAATGGAAAGCTGCGAACTCTGGTTGGACTGAGTTTGCTACGAC
GGCCCCTCACAGGGCAAGGGAAATATGTGATGGCTCAACGAATACAACTT
TGGAACCGTTGTGTGGGAGGCCATTAGGGATCAAATTCAATCCTGTAACT
TGCGATCTATACATTGCAGATGCGTACTTTGGGTTGATGGTGGTCGGTCC
AAATGGTGGTCAGGCTCAACAACTTGCTTCTTCAGCCGGAGGAATCCCTT
TTCGTTTCACAAACGACTTGGACATCGATCCGAACACAGGGATAGTCTAT
TTTACCGACAGCAGCATTTATTTCCAAAGAAGGCAATATTTTATGTCGAT
TGCTACCGGAGATAAAAGTGGGAGGTTATTGAAATATGATCCACTCAAGA
AGAACGTGACAGTAATGTATAACGGCTTATCATTTCCAAATGGTGTTGCA
CTAAGCAATAATAACTCGTTCCTCCTACTTGCTGAGTCAGCCACACTGAA
GATTTTACGGTTTTGGCTTCAAGGTGAGAGAACTACATACACTCCGCAGC
TTTTTGCTGAGATGCCGAGATTTCCTGACAACATCAAGAGTGACAGCAAG
GGAGAATTTTGGATTGCAATGAACTCTG
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