CX070042

Overview
NameCX070042
Unique NameCX070042
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length868
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX070042 vs. ExPASy Swiss-Prot
Match: ACLY_MOUSE (ATP-citrate synthase OS=Mus musculus GN=Acly PE=1 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 3.128e-51
Identity = 98/188 (52.13%), Postives = 126/188 (67.02%), Query Frame = 2
Query:   47 KWGNIEFPLPFGRAMSATESFIHDLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEGEVLQYARVVIDCATADPDGRKRALVIGGGIANFTDVAATFNGIIQXXXXXXXXXXXXRMHLYVRRGGPNYQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQAI 610
            KWG+IEFP PFGR     E++I DLD K+ ASLK T+LNPKGRIWTMVAGGGASV+Y+DT+ DLG  +EL NY EYSGAP+E +   YA+ ++   T +     + L+IGG IANFT+VAATF GI++             + ++VRRGGPNYQ GL  M  + +  G+PI V+G E  MT I   A+
Sbjct:  232 KWGDIEFPPPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYSDTICDLGGVNELANYGEYSGAPSEQQTYDYAKTILSLMTREKHPEGKILIIGGSIANFTNVAATFKGIVRAIRDYQGPLKEHEVTIFVRRGGPNYQEGLRVMGEVGKTTGIPIHVFGTETHMTAIVGMAL 419          
BLAST of CX070042 vs. ExPASy Swiss-Prot
Match: ACLY_SHEEP (ATP-citrate synthase OS=Ovis aries GN=ACLY PE=2 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 4.085e-51
Identity = 101/190 (53.16%), Postives = 129/190 (67.89%), Query Frame = 2
Query:   47 KWGNIEFPLPFGRAMSATESFIHDLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEGEVLQYARVVIDCATAD--PDGRKRALVIGGGIANFTDVAATFNGIIQXXXXXXXXXXXXRMHLYVRRGGPNYQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQAI 610
            KWG+IEFP PFGR     E++I DLD K+ ASLK T+LNPKGRIWTMVAGGGASV+Y+DT+ DLG  +EL NY EYSGAP+E +   YA+ ++   T +  PDG  + L+IGG IANFT+VAATF GI++             + ++VRRGGPNYQ GL  M  + +  G+PI V+G E  MT I   A+
Sbjct:  232 KWGDIEFPPPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYSDTICDLGGVNELANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDG--KILIIGGSIANFTNVAATFKGIVRAIRDYQGPLKEHEVTIFVRRGGPNYQEGLRVMGEVGKTTGIPIHVFGTETHMTAIVGMAL 419          
BLAST of CX070042 vs. ExPASy Swiss-Prot
Match: ACLY_HUMAN (ATP-citrate synthase OS=Homo sapiens GN=ACLY PE=1 SV=3)

HSP 1 Score: 201.83 bits (512), Expect = 4.085e-51
Identity = 101/190 (53.16%), Postives = 129/190 (67.89%), Query Frame = 2
Query:   47 KWGNIEFPLPFGRAMSATESFIHDLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEGEVLQYARVVIDCATAD--PDGRKRALVIGGGIANFTDVAATFNGIIQXXXXXXXXXXXXRMHLYVRRGGPNYQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQAI 610
            KWG+IEFP PFGR     E++I DLD K+ ASLK T+LNPKGRIWTMVAGGGASV+Y+DT+ DLG  +EL NY EYSGAP+E +   YA+ ++   T +  PDG  + L+IGG IANFT+VAATF GI++             + ++VRRGGPNYQ GL  M  + +  G+PI V+G E  MT I   A+
Sbjct:  232 KWGDIEFPPPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYSDTICDLGGVNELANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDG--KILIIGGSIANFTNVAATFKGIVRAIRDYQGPLKEHEVTIFVRRGGPNYQEGLRVMGEVGKTTGIPIHVFGTETHMTAIVGMAL 419          
BLAST of CX070042 vs. ExPASy Swiss-Prot
Match: ACLY_BOVIN (ATP-citrate synthase OS=Bos taurus GN=ACLY PE=2 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 4.085e-51
Identity = 101/190 (53.16%), Postives = 129/190 (67.89%), Query Frame = 2
Query:   47 KWGNIEFPLPFGRAMSATESFIHDLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEGEVLQYARVVIDCATAD--PDGRKRALVIGGGIANFTDVAATFNGIIQXXXXXXXXXXXXRMHLYVRRGGPNYQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQAI 610
            KWG+IEFP PFGR     E++I DLD K+ ASLK T+LNPKGRIWTMVAGGGASV+Y+DT+ DLG  +EL NY EYSGAP+E +   YA+ ++   T +  PDG  + L+IGG IANFT+VAATF GI++             + ++VRRGGPNYQ GL  M  + +  G+PI V+G E  MT I   A+
Sbjct:  232 KWGDIEFPPPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYSDTICDLGGVNELANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDG--KILIIGGSIANFTNVAATFKGIVRAIRDYQGPLKEHEVTIFVRRGGPNYQEGLRVMGEVGKTTGIPIHVFGTETHMTAIVGMAL 419          
BLAST of CX070042 vs. ExPASy Swiss-Prot
Match: ACLY_RAT (ATP-citrate synthase OS=Rattus norvegicus GN=Acly PE=1 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 6.968e-51
Identity = 101/189 (53.44%), Postives = 128/189 (67.72%), Query Frame = 2
Query:   47 KWGNIEFPLPFGRAMSATESFIHDLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEGEVLQYARVVIDCATAD--PDGRKRALVIGGGIANFTDVAATFNGIIQXXXXXXXXXXXXRMHLYVRRGGPNYQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQA 607
            KWG+IEFP PFGR     E++I DLD K+ ASLK T+LNPKGRIWTMVAGGGASV+Y+DT+ DLG  +EL NY EYSGAP+E +   YA+ ++   T +  PDG  + L+IGG IANFT+VAATF GI++             + ++VRRGGPNYQ GL  M  + +  G+PI V+G E  MT I   A
Sbjct:  232 KWGDIEFPPPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYSDTICDLGGVNELANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDG--KILIIGGSIANFTNVAATFKGIVRAIRDYQGSLKEHEVTIFVRRGGPNYQEGLRVMGEVGKTTGIPIHVFGTETHMTAIVGMA 418          
BLAST of CX070042 vs. ExPASy Swiss-Prot
Match: ACLY_CAEEL (Probable ATP-citrate synthase OS=Caenorhabditis elegans GN=D1005.1 PE=2 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.453e-48
Identity = 95/188 (50.53%), Postives = 129/188 (68.62%), Query Frame = 2
Query:   56 NIEFPLPFGRAMSATESFIHDLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEGEVLQYARVVIDC---ATADPDGRKRALVIGGGIANFTDVAATFNGIIQXXXXXXXXXXXXRMHLYVRRGGPNYQRGLAKMRALAEEIGLPIEVYGPEATMTGICKQAI 610
            ++EFP PFGR +++ E +I ++D KT ASLK T+LN KGR+WTMVAGGGASV++ DTV DLG ASEL NY EYSG P+E +  +YA+ ++      T  PDG  + L+IGG IANFT+VA TF GI++            ++ ++VRRGGPNYQ GL +++  A ++ LPI V+GPE  MT I   A+
Sbjct:  246 HVEFPAPFGRDLTSEEQYISEMDAKTGASLKLTILNRKGRVWTMVAGGGASVVFTDTVCDLGGASELANYGEYSGDPSESQTYEYAKTLLSVMTEGTPRPDG--KVLIIGGSIANFTNVAKTFGGIVRAFETFVSKLKEHKVTIFVRRGGPNYQEGLRRIKDAATKLELPIHVFGPETHMTAIVGAAL 431          
BLAST of CX070042 vs. ExPASy Swiss-Prot
Match: ACL2_SCHPO (Probable ATP-citrate synthase subunit 2 OS=Schizosaccharomyces pombe GN=SPAC22A12.16 PE=1 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.835e-44
Identity = 87/178 (48.88%), Postives = 115/178 (64.61%), Query Frame = 2
Query:   65 FPLPFGRAMSATESFIHDLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEGEVLQYARVVIDCAT-ADPDGRKRALVIGGGIANFTDVAATFNGIIQXXXXXXXXXXXXRMHLYVRRGGPNYQRGLAKMRALAEEIGLPIEVYGPEATMTGI 595
            FP PFGR +S  E+++  LD KT ASLK T+LN +GR+W +VAGGGASV+YAD V   G A EL NY EYSGAP +G+  +YA+ V+D  T  +P    + L IGGGIANFT  A TF  I +            ++ ++VRR GPNYQ GL  +R   ++  LP++VYGPE  ++GI
Sbjct:  298 FPAPFGRELSKEEAYVQGLDAKTGASLKLTILNAEGRVWNLVAGGGASVVYADAVAVNGAADELANYGEYSGAPTDGQTYEYAKTVLDLMTRGEPRADGKVLFIGGGIANFTSPAVTFRAIARALGDYKDKLHAHKVSIWVRRAGPNYQEGLRVIREAGKKFDLPLKVYGPECHISGI 475          
The following BLAST results are available for this feature:
BLAST of CX070042 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
ACLY_MOUSE3.128e-5152.13ATP-citrate synthase OS=Mus musculus GN=Acly PE=1 ... [more]
ACLY_SHEEP4.085e-5153.16ATP-citrate synthase OS=Ovis aries GN=ACLY PE=2 SV... [more]
ACLY_HUMAN4.085e-5153.16ATP-citrate synthase OS=Homo sapiens GN=ACLY PE=1 ... [more]
ACLY_BOVIN4.085e-5153.16ATP-citrate synthase OS=Bos taurus GN=ACLY PE=2 SV... [more]
ACLY_RAT6.968e-5153.44ATP-citrate synthase OS=Rattus norvegicus GN=Acly ... [more]
ACLY_CAEEL1.453e-4850.53Probable ATP-citrate synthase OS=Caenorhabditis el... [more]
ACL2_SCHPO2.835e-4448.88Probable ATP-citrate synthase subunit 2 OS=Schizos... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_14D09_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-14D09-G18-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070042 ID=CX070042; Name=CX070042; organism=Citrus sinensis; type=EST; length=868bp
CGAAATTGGGTACCGCGGCCCCCCCGCTGCTTTCAAGAACTTCAAAAAGT
GGGGCAATATTGAATTTCCCTTGCCGTTTGGAAGAGCAATGAGTGCTACA
GAAAGCTTTATACATGATCTAGATGAAAAGACAAGTGCATCTTTGAAATT
CACAGTTTTGAACCCAAAAGGACGAATCTGGACTATGGTAGCTGGAGGAG
GTGCAAGTGTCATCTATGCTGATACGGTTGGAGATCTTGGCTATGCCTCC
GAGCTCGGTAACTATGCAGAATACAGTGGAGCACCCAACGAGGGGGAGGT
CTTGCAATATGCCAGAGTTGTAATTGATTGTGCAACTGCAGATCCTGATG
GTCGCAAGAGAGCCCTTGTGATTGGAGGAGGAATAGCTAACTTCACTGAT
GTTGCAGCTACATTCAATGGCATAATCCAAGCCCTGAAGGAAAAGGAATC
GAAGCTGAAAGCAGCAAGAATGCACCTATATGTGAGGAGAGGAGGTCCTA
ATTACCAGAGGGGCCTTGCAAAAATGCGAGCACTGGCAGAGGAAATTGGC
CTTCCCATTGAGGTTTATGGGCCCGAAGCAACAATGACTGGCATATGCAA
ACAGGCTATTGAGTGCATTAGCGCTGCTGCATGAGCTATCAACTCCTTTC
TTCAATGCTTCACACTCACGCCATTGTCATTGCAAATTTCTAGTATCCAT
CATCATTACTTTGTACCAATTTCGCTGTATCAGATACCTCAGGATGTAAT
GTTAGTTCAAAATATGGTTAATGAGGATGAAAAACTGATCTCTGTCTGTA
GTGTCACCATAATAAAAGATTAAGTAGCCTTCTAACTCCTATTGGTCTTC
ATGCTTGAATGAATGCCT
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