CX069986
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX069986 vs. ExPASy Swiss-Prot
Match: PAPD5_MOUSE (PAP-associated domain-containing protein 5 OS=Mus musculus GN=Papd5 PE=2 SV=2) HSP 1 Score: 85.1149 bits (209), Expect = 2.522e-22 Identity = 47/106 (44.34%), Postives = 70/106 (66.04%), Query Frame = 3 Query: 138 LQALSRALLQRGIAKK--IQVIAKARVPIVKFFEKKSGVSFDISFDAQNGPKAAEFIKDALAECPPLRPLCLILKVFLQQRELNEVYSGGIGSFALLTMIMAVLKV 449 L L AL + +A + ++V+ KA VPI+K + + V DISF+ QNG +AA+ IKD + P L L L+LK FL QR+LNEV++GGIGS++L M ++ L++ Sbjct: 205 LWTLEEALRKHKVADEDSVKVLDKATVPIIKLTDSFTEVKVDISFNVQNGVRAADLIKDFTKKYPVLPYLVLVLKQFLLQRDLNEVFTGGIGSYSLFLMAVSFLQL 310 HSP 2 Score: 41.5874 bits (96), Expect = 2.522e-22 Identity = 19/38 (50.00%), Postives = 23/38 (60.53%), Query Frame = 1 Query: 1 PKCKPKVFGTFRTGLYLPTSDIDAFAESFGSRL*LWNL 114 P ++FG+F+TGLYLPTSDID L LW L Sbjct: 171 PSADVQIFGSFKTGLYLPTSDIDLVVFGKWENLPLWTL 208
BLAST of CX069986 vs. ExPASy Swiss-Prot
Match: PAPD5_HUMAN (PAP-associated domain-containing protein 5 OS=Homo sapiens GN=PAPD5 PE=1 SV=2) HSP 1 Score: 85.1149 bits (209), Expect = 2.526e-22 Identity = 47/106 (44.34%), Postives = 70/106 (66.04%), Query Frame = 3 Query: 138 LQALSRALLQRGIAKK--IQVIAKARVPIVKFFEKKSGVSFDISFDAQNGPKAAEFIKDALAECPPLRPLCLILKVFLQQRELNEVYSGGIGSFALLTMIMAVLKV 449 L L AL + +A + ++V+ KA VPI+K + + V DISF+ QNG +AA+ IKD + P L L L+LK FL QR+LNEV++GGIGS++L M ++ L++ Sbjct: 191 LWTLEEALRKHKVADEDSVKVLDKATVPIIKLTDSFTEVKVDISFNVQNGVRAADLIKDFTKKYPVLPYLVLVLKQFLLQRDLNEVFTGGIGSYSLFLMAVSFLQL 296 HSP 2 Score: 41.5874 bits (96), Expect = 2.526e-22 Identity = 19/38 (50.00%), Postives = 23/38 (60.53%), Query Frame = 1 Query: 1 PKCKPKVFGTFRTGLYLPTSDIDAFAESFGSRL*LWNL 114 P ++FG+F+TGLYLPTSDID L LW L Sbjct: 157 PSADVQIFGSFKTGLYLPTSDIDLVVFGKWENLPLWTL 194
BLAST of CX069986 vs. ExPASy Swiss-Prot
Match: TRF5_ASHGO (Poly(A) RNA polymerase protein 1 OS=Ashbya gossypii GN=TRF5 PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 1.591e-21 Identity = 50/118 (42.37%), Postives = 76/118 (64.41%), Query Frame = 3 Query: 96 VVIMESGIHNPATGLQALSRALLQRGIAKKIQVIAKARVPIVKFFEKKSGVSFDISFDAQNGPKAAEFIKDALAECPPLRPLCLILKVFLQQRELNEVYSGGIGSFALLTMIMAVLKV 449 VV +SG + L +L+ L + G+A ++ VIAKARVPI+KF E S + D+SF+ NG +AA+ I+ L + P LR L LI+K FL R LN+V+ GG+G F+++ + + LK+ Sbjct: 256 VVNSKSGDKDNKNALYSLASYLKRNGLATQVSVIAKARVPIIKFVEPASQIHIDLSFERTNGVEAAKIIRGWLHDTPGLRELVLIVKQFLHARRLNDVHIGGLGGFSIICLAYSFLKL 373 HSP 2 Score: 28.8758 bits (63), Expect = 1.591e-21 Identity = 13/28 (46.43%), Postives = 15/28 (53.57%), Query Frame = 1 Query: 1 PKCKPKVFGTFRTGLYLPTSDIDAFAES 84 P FG++ T LYLP SDID S Sbjct: 232 PDANLHCFGSYATDLYLPGSDIDCVVNS 259
BLAST of CX069986 vs. ExPASy Swiss-Prot
Match: TRF5_YEAST (Poly(A) RNA polymerase protein 1 OS=Saccharomyces cerevisiae GN=TRF5 PE=1 SV=2) HSP 1 Score: 91.2781 bits (225), Expect = 4.553e-21 Identity = 43/101 (42.57%), Postives = 69/101 (68.32%), Query Frame = 3 Query: 147 LSRALLQRGIAKKIQVIAKARVPIVKFFEKKSGVSFDISFDAQNGPKAAEFIKDALAECPPLRPLCLILKVFLQQRELNEVYSGGIGSFALLTMIMAVLKV 449 L+R L +G+A +++VI K RVPI+KF E +S + D+SF+ NG +AA+ I++ L + P LR L LI+K FL R LN V++GG+G F ++ ++ + L + Sbjct: 254 LARHLKNKGLAIRMEVIVKTRVPIIKFIEPQSQLHIDVSFERTNGLEAAKLIREWLRDSPGLRELVLIIKQFLHSRRLNNVHTGGLGGFTVICLVYSFLNM 354 HSP 2 Score: 31.187 bits (69), Expect = 4.553e-21 Identity = 14/22 (63.64%), Postives = 15/22 (68.18%), Query Frame = 1 Query: 19 VFGTFRTGLYLPTSDIDAFAES 84 VFG+F T LYLP SDID S Sbjct: 219 VFGSFATDLYLPGSDIDCVVNS 240
BLAST of CX069986 vs. ExPASy Swiss-Prot
Match: POLS_MOUSE (DNA polymerase sigma OS=Mus musculus GN=Pols PE=2 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 7.728e-21 Identity = 46/106 (43.40%), Postives = 74/106 (69.81%), Query Frame = 3 Query: 138 LQALSRALLQRGIAK--KIQVIAKARVPIVKFFEKKSGVSFDISFDAQNGPKAAEFIKDALAECPPLRPLCLILKVFLQQRELNEVYSGGIGSFALLTMIMAVLKV 449 LQ L +AL + +A+ I+V+ KA VPI+K ++++ V DISF+ + G +AAEFIK+ + + L L L+LK FL QR+LNEV++GGI S++L+ M ++ L++ Sbjct: 61 LQLLEQALRKHNVAEPCSIKVLDKATVPIIKLTDQETEVKVDISFNMETGVRAAEFIKNYMKKYSLLPYLILVLKQFLLQRDLNEVFTGGISSYSLILMAISFLQL 166 HSP 2 Score: 36.5798 bits (83), Expect = 7.728e-21 Identity = 15/23 (65.22%), Postives = 18/23 (78.26%), Query Frame = 1 Query: 1 PKCKPKVFGTFRTGLYLPTSDID 69 P ++FG+F TGLYLPTSDID Sbjct: 27 PTADVQIFGSFSTGLYLPTSDID 49
BLAST of CX069986 vs. ExPASy Swiss-Prot
Match: POLS_HUMAN (DNA polymerase sigma OS=Homo sapiens GN=POLS PE=1 SV=2) HSP 1 Score: 85.1149 bits (209), Expect = 7.728e-21 Identity = 46/106 (43.40%), Postives = 74/106 (69.81%), Query Frame = 3 Query: 138 LQALSRALLQRGIAK--KIQVIAKARVPIVKFFEKKSGVSFDISFDAQNGPKAAEFIKDALAECPPLRPLCLILKVFLQQRELNEVYSGGIGSFALLTMIMAVLKV 449 LQ L +AL + +A+ I+V+ KA VPI+K ++++ V DISF+ + G +AAEFIK+ + + L L L+LK FL QR+LNEV++GGI S++L+ M ++ L++ Sbjct: 61 LQLLEQALRKHNVAEPCSIKVLDKATVPIIKLTDQETEVKVDISFNMETGVRAAEFIKNYMKKYSLLPYLILVLKQFLLQRDLNEVFTGGISSYSLILMAISFLQL 166 HSP 2 Score: 36.5798 bits (83), Expect = 7.728e-21 Identity = 15/23 (65.22%), Postives = 18/23 (78.26%), Query Frame = 1 Query: 1 PKCKPKVFGTFRTGLYLPTSDID 69 P ++FG+F TGLYLPTSDID Sbjct: 27 PTADVQIFGSFSTGLYLPTSDID 49
BLAST of CX069986 vs. ExPASy Swiss-Prot
Match: PAP2_YEAST (Poly(A) RNA polymerase protein 2 OS=Saccharomyces cerevisiae GN=PAP2 PE=1 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 6.896e-20 Identity = 48/116 (41.38%), Postives = 76/116 (65.52%), Query Frame = 3 Query: 96 VVIMESGIHNPATGLQALSRALLQRGIAKKIQVIAKARVPIVKFFEKKSGVSFDISFDAQNGPKAAEFIKDALAECPPLRPLCLILKVFLQQRELNEVYSGGIGSFALLTMIMAVL 443 VV E G L +L+ L ++ +A +++V+AKARVPI+KF E SG+ D+SF+ NG +AA+ I++ L + P LR L LI+K FL R LN V++GG+G F+++ ++ + L Sbjct: 240 VVTSELGGKESRNNLYSLASHLKKKNLATEVEVVAKARVPIIKFVEPHSGIHIDVSFERTNGIEAAKLIREWLDDTPGLRELVLIVKQFLHARRLNNVHTGGLGGFSIICLVFSFL 355
BLAST of CX069986 vs. ExPASy Swiss-Prot
Match: CID14_SCHPO (Poly(A) RNA polymerase cid14 OS=Schizosaccharomyces pombe GN=cid14 PE=1 SV=2) HSP 1 Score: 76.6406 bits (187), Expect = 5.808e-17 Identity = 38/101 (37.62%), Postives = 63/101 (62.38%), Query Frame = 3 Query: 147 LSRALLQRGIAKKIQVIAKARVPIVKFFEKKSGVSFDISFDAQNGPKAAEFIKDALAECPPLRPLCLILKVFLQQRELNEVYSGGIGSFALLTMIMAVLKV 449 L+ L + +A ++QVI A VPI+KF + + V DISF+ G K + + + P LRPL +I+K FL R LNEV+ GG+ S+A++ ++++ L++ Sbjct: 320 LAHHLKKLKLASEVQVITTANVPIIKFVDPLTKVHVDISFNQPGGLKTCLVVNGFMKKYPALRPLVIIIKHFLNMRALNEVFLGGLSSYAIVCLVVSFLQL 420 HSP 2 Score: 31.9574 bits (71), Expect = 5.808e-17 Identity = 13/17 (76.47%), Postives = 15/17 (88.24%), Query Frame = 1 Query: 19 VFGTFRTGLYLPTSDID 69 VFG+F T LYLPTSD+D Sbjct: 284 VFGSFETKLYLPTSDLD 300 The following BLAST results are available for this feature:
BLAST of CX069986 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 8
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX069986 ID=CX069986; Name=CX069986; organism=Citrus sinensis; type=EST; length=778bpback to top |