CX069942

Overview
NameCX069942
Unique NameCX069942
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length831
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4319 contig Csv1_Contig4319:446..1276. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX069942 vs. ExPASy Swiss-Prot
Match: GLT2_ARATH (Germin-like protein subfamily T member 2 OS=Arabidopsis thaliana GN=At1g18980 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.262e-18
Identity = 45/88 (51.14%), Postives = 59/88 (67.05%), Query Frame = 2
Query:    5 VLVGLVTTNNTFFSKVLTPGMVFLIPRALIHFQLNVGKGPATFIPIFNTQNPGVSDSLTTLFDTTPPIPNELLTKSLRVSDDVINGIR 268
            V VG +TTNNT FSKVL  G +F++PR L+HFQ NVGK  A  I  FN+Q PG +   +TLF + P IPN +LTK+ R  D  +N ++
Sbjct:  128 VFVGFLTTNNTLFSKVLNAGEMFVVPRGLVHFQWNVGKVKARLITSFNSQLPGSAVLPSTLFGSNPTIPNAVLTKTFRTDDVTVNKLK 215          
BLAST of CX069942 vs. ExPASy Swiss-Prot
Match: GLT1_ARATH (Germin-like protein subfamily T member 1 OS=Arabidopsis thaliana GN=GLP1 PE=2 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.370e-16
Identity = 42/88 (47.73%), Postives = 56/88 (63.64%), Query Frame = 2
Query:    5 VLVGLVTTNNTFFSKVLTPGMVFLIPRALIHFQLNVGKGPATFIPIFNTQNPGVSDSLTTLFDTTPPIPNELLTKSLRVSDDVINGIR 268
            V VG ++TNNT FSKVL  G  F+IPR L+HFQ NVG+  A  I  FN+Q PG     +TLF + P IPN +LT++ R  D  +  ++
Sbjct:  128 VFVGFLSTNNTLFSKVLNAGEAFVIPRGLVHFQWNVGQVKARMITAFNSQLPGAVVLPSTLFGSKPEIPNAVLTRAFRTDDTTVQNLK 215          
BLAST of CX069942 vs. ExPASy Swiss-Prot
Match: GL36_ORYSJ (Germin-like protein 3-6 OS=Oryza sativa subsp. japonica GN=Os03g0694000 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.053e-16
Identity = 40/83 (48.19%), Postives = 55/83 (66.27%), Query Frame = 2
Query:    8 LVGLVTTNNTFFSKVLTPGMVFLIPRALIHFQLNVGKGPATFIPIFNTQNPGVSDSLTTLFDTTPPIPNELLTKSLRVSDDVI 256
            ++G + T N ++SKV+  G  F+IPR L+HFQ NVGK  AT +  FN+QNPG+     TLF + PPIP  +L K+LRV   V+
Sbjct:  136 IIGTLDTGNRYYSKVVRAGETFVIPRGLMHFQFNVGKTEATMVVSFNSQNPGIVFVPLTLFGSNPPIPTPVLVKALRVDAGVV 218          
BLAST of CX069942 vs. ExPASy Swiss-Prot
Match: GL35_ORYSJ (Germin-like protein 3-5 OS=Oryza sativa subsp. japonica GN=Os03g0693900 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.053e-16
Identity = 40/83 (48.19%), Postives = 55/83 (66.27%), Query Frame = 2
Query:    8 LVGLVTTNNTFFSKVLTPGMVFLIPRALIHFQLNVGKGPATFIPIFNTQNPGVSDSLTTLFDTTPPIPNELLTKSLRVSDDVI 256
            ++G + T N ++SKV+  G  F+IPR L+HFQ NVGK  AT +  FN+QNPG+     TLF + PPIP  +L K+LRV   V+
Sbjct:  134 IIGTLDTGNRYYSKVVRAGETFVIPRGLMHFQFNVGKTEATMVVSFNSQNPGIVFVPLTLFGSNPPIPTPVLVKALRVDAGVV 216          
BLAST of CX069942 vs. ExPASy Swiss-Prot
Match: GL34_ORYSJ (Putative germin-like protein 3-4 OS=Oryza sativa subsp. japonica GN=Os03g0693800 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.883e-16
Identity = 42/88 (47.73%), Postives = 58/88 (65.91%), Query Frame = 2
Query:    2 KVLVGLVTT---NNTFFSKVLTPGMVFLIPRALIHFQLNVGKGPATFIPIFNTQNPGVSDSLTTLFDTTPPIPNELLTKSLRVSDDVI 256
            ++LVG++ T    N ++SKV+  G  F+IPR L+HFQ NVGK  AT +  FN+QNPG+     TLF + PPIP  +L K+LRV   V+
Sbjct:  131 ELLVGIIGTLDMGNRYYSKVVRAGETFVIPRGLMHFQFNVGKTEATMVVSFNSQNPGIVFVPLTLFGSNPPIPTPVLVKALRVDTGVV 218          
BLAST of CX069942 vs. ExPASy Swiss-Prot
Match: GL33_ORYSJ (Germin-like protein 3-3 OS=Oryza sativa subsp. japonica GN=Os03g0693700 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.160e-15
Identity = 39/83 (46.99%), Postives = 55/83 (66.27%), Query Frame = 2
Query:    8 LVGLVTTNNTFFSKVLTPGMVFLIPRALIHFQLNVGKGPATFIPIFNTQNPGVSDSLTTLFDTTPPIPNELLTKSLRVSDDVI 256
            ++G + T N ++S+V+  G  F+IPR L+HFQ NVGK  AT +  FN+QNPG+     TLF + PPIP  +L K+LRV   V+
Sbjct:  134 IIGSLDTGNRYYSRVVRGGETFVIPRGLMHFQFNVGKTEATMVVSFNSQNPGIVFVPLTLFGSNPPIPTPVLVKALRVDAGVV 216          
BLAST of CX069942 vs. ExPASy Swiss-Prot
Match: OXO2_HORVU (Oxalate oxidase 2 OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.585e-15
Identity = 40/92 (43.48%), Postives = 59/92 (64.13%), Query Frame = 2
Query:    8 LVGLVTTNNTFFSKVLTPGMVFLIPRALIHFQLNVGKGPATFIPIFNTQNPGVSDSLTTLFDTTPPIPNELLTKSLRVSDDVINGIRKARAS 283
            ++G + + N  +S+V+  G  FLIPR L+HFQ NVGK  A+ +  FN+QNPG+     TLF + PPIP  +LTK+LRV   V+  ++   A+
Sbjct:  131 ILGSLDSGNKLYSRVVRAGETFLIPRGLMHFQFNVGKTEASMVVSFNSQNPGIVFVPLTLFGSNPPIPTPVLTKALRVEAGVVELLKSKFAA 222          
BLAST of CX069942 vs. ExPASy Swiss-Prot
Match: GER2_WHEAT (Oxalate oxidase GF-2.8 OS=Triticum aestivum PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.376e-15
Identity = 40/92 (43.48%), Postives = 59/92 (64.13%), Query Frame = 2
Query:    8 LVGLVTTNNTFFSKVLTPGMVFLIPRALIHFQLNVGKGPATFIPIFNTQNPGVSDSLTTLFDTTPPIPNELLTKSLRVSDDVINGIRKARAS 283
            ++G + + N  +S+V+  G  FLIPR L+HFQ NVGK  A+ +  FN+QNPG+     TLF + PPIP  +LTK+LRV   V+  ++   A+
Sbjct:  131 ILGSLDSGNKLYSRVVRAGETFLIPRGLMHFQFNVGKTEASMVVSFNSQNPGIVFVPLTLFGSNPPIPTPVLTKALRVEARVVELLKSKFAA 222          
BLAST of CX069942 vs. ExPASy Swiss-Prot
Match: GL22_ARATH (Germin-like protein subfamily 2 member 2 OS=Arabidopsis thaliana GN=At1g02335 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.520e-15
Identity = 37/91 (40.66%), Postives = 57/91 (62.64%), Query Frame = 2
Query:   11 VGLVTTNNTFFSKVLTPGMVFLIPRALIHFQLNVGKGPATFIPIFNTQNPGVSDSLTTLFDTTPPIPNELLTKSLRVSDDVINGIRKARAS 283
            VG +TT N  F+K +  G VF+ PR L+HFQ N GK PA+ +  FN+Q PG +    TLF   P +P ++LTK+ +V   +++ I++  A+
Sbjct:  127 VGFITTANKLFTKTIKIGEVFVFPRGLVHFQKNNGKSPASVLSAFNSQLPGTASVAATLFAAEPALPEDVLTKTFQVGSKMVDKIKERLAT 217          
BLAST of CX069942 vs. ExPASy Swiss-Prot
Match: GL11_ORYSJ (Germin-like protein 1-1 OS=Oryza sativa subsp. japonica GN=GER4 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.520e-15
Identity = 38/86 (44.19%), Postives = 52/86 (60.47%), Query Frame = 2
Query:   11 VGLVTTNNTFFSKVLTPGMVFLIPRALIHFQLNVGKGPATFIPIFNTQNPGVSDSLTTLFDTTPPIPNELLTKSLRVSDDVINGIR 268
            VG +TT N  F+K +T G VF+ PR L+HFQ N G GPA  I  FN+Q  G      TLF   PP+P+++L K+ RV    ++ I+
Sbjct:  127 VGFITTANKLFTKTVTAGEVFVFPRGLVHFQQNRGHGPAAVIAAFNSQLQGTQAIAATLFAAAPPVPSDVLAKAFRVDVPQVDAIK 212          
The following BLAST results are available for this feature:
BLAST of CX069942 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
GLT2_ARATH3.262e-1851.14Germin-like protein subfamily T member 2 OS=Arabid... [more]
GLT1_ARATH1.370e-1647.73Germin-like protein subfamily T member 1 OS=Arabid... [more]
GL36_ORYSJ3.053e-1648.19Germin-like protein 3-6 OS=Oryza sativa subsp. jap... [more]
GL35_ORYSJ3.053e-1648.19Germin-like protein 3-5 OS=Oryza sativa subsp. jap... [more]
GL34_ORYSJ8.883e-1647.73Putative germin-like protein 3-4 OS=Oryza sativa s... [more]
GL33_ORYSJ1.160e-1546.99Germin-like protein 3-3 OS=Oryza sativa subsp. jap... [more]
OXO2_HORVU2.585e-1543.48Oxalate oxidase 2 OS=Hordeum vulgare PE=2 SV=1[more]
GER2_WHEAT3.376e-1543.48Oxalate oxidase GF-2.8 OS=Triticum aestivum PE=1 S... [more]
GL22_ARATH7.520e-1540.66Germin-like protein subfamily 2 member 2 OS=Arabid... [more]
GL11_ORYSJ7.520e-1544.19Germin-like protein 1-1 OS=Oryza sativa subsp. jap... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_13G10_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-13G10-M19-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069942 ID=CX069942; Name=CX069942; organism=Citrus sinensis; type=EST; length=831bp
AAAGGTGCTTGTTGGGTTAGTAACAACTAATAATACCTTTTTCTCAAAGG
TTTTGACTCCCGGGATGGTGTTCTTAATTCCCAGAGCACTGATTCACTTC
CAGCTAAATGTTGGAAAGGGGCCGGCCACCTTTATACCTATTTTCAATAC
TCAAAATCCTGGCGTTTCGGACTCACTCACTACTCTTTTTGATACAACAC
CCCCAATTCCCAATGAATTGCTGACCAAATCTCTTCGAGTAAGTGATGAT
GTGATAAATGGCATCAGAAAAGCCCGGGCATCAAACTAGTAATCGGTCCA
GCTAGGTTAACATCCTGGGTGCTTGATCAATATGCTTTAGTGTGCCAACA
TATATATACTAATAAATGCGATTTATTTTATGTTACAATTATTGAATAAA
GAGTAAAGTCCAGACGACCAATAATTATTGAATAAGGAAAGCGAGATTTT
TTTTTTCTCATTTCTTCTTCTTTTACTTTTGATTTTTCCATGGCATTATC
TATGCAATTTGTTGCTTCCATCGGCCTCGTTCATTGGTATTTCCTTGTAG
GCTTCAAATAATCTTTTATAATCCGAATTTCATTCCTGTATTTCCAGCCT
CTCAATATCCATTAATGGTACCCCTGCAATAATTATTGAATAAAAAATGC
CTAATACTTATTAATTTTTTTGTCTTGTTAATTTTTTTTCATGGGTCATT
CTATTTGATATATACCGCGATAAAATAATTCGATAAATATGTCAAAAATA
AAATTACCGGTGAAATAGAAAACATACTGAAATCAAACCCGTTCATTGCT
TTATTATTTTTTTGTTCTCCCTATTCAACCG
back to top