CX069921

Overview
NameCX069921
Unique NameCX069921
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length834
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4317 contig Csv1_Contig4317:1..834. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX069921 vs. ExPASy Swiss-Prot
Match: C3H18_ARATH (Zinc finger CCCH domain-containing protein 18 OS=Arabidopsis thaliana GN=At2g05160 PE=2 SV=1)

HSP 1 Score: 288.115 bits (736), Expect = 4.076e-77
Identity = 144/235 (61.28%), Postives = 177/235 (75.32%), Query Frame = 3
Query:    3 DDHLFSPGSXXXXXXXXXXXXXARRGNPISIASLPMLYYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKYLENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKLVDRKYQERMESPMYFSPQYVDMDSDLHSFSRGCETSRFIRK 707
            ++H+ SP S              RRG PISIASLPM+YYEKYG+ LQA GYLTESQRHGKAGYSLTKLLARLKN++RL+DRPHGQH+VILAEDA K++E   ER++ G I+ GSRQIYLTFPAES+FTE DVS YF +YG V+DVRIPCQQKRM+GFVTFAS++TVK ILAKGNPHF+C ARVLVKPYREKS+        +    M +  ++++ D ++++       S  +RK
Sbjct:  203 EEHVVSPVSLEKLEGEIIELLKLRRGAPISIASLPMMYYEKYGRTLQAEGYLTESQRHGKAGYSLTKLLARLKNTIRLVDRPHGQHSVILAEDASKFVEYTGERNEHGAILAGSRQIYLTFPAESSFTEHDVSIYFTSYGHVEDVRIPCQQKRMYGFVTFASSETVKHILAKGNPHFICNARVLVKPYREKSRSSRYLDNYKPLHGMRYGSKFIERDIEMNTLPPRVSESSRMRK 437          
BLAST of CX069921 vs. ExPASy Swiss-Prot
Match: C3H54_ORYSJ (Zinc finger CCCH domain-containing protein 54 OS=Oryza sativa subsp. japonica GN=Os08g0126700 PE=2 SV=2)

HSP 1 Score: 265.388 bits (677), Expect = 2.829e-70
Identity = 137/235 (58.30%), Postives = 170/235 (72.34%), Query Frame = 3
Query:   18 SPGSXXXXXXXXXXXXXARRGNPISIASLPMLYYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKYLENRNERS----DPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKLVDRKYQERMESPM-YFSPQYVDMDSDLHSFSRGCETSRFIRK 707
            +PGS             +RRG P+SIASLP LY EKYGK LQA GYLTESQRHGKAGYSLT+LL+RL N +R+I+RPHGQH+V+LAEDA KY++ R        D G +   S QIYLTFPAESTF EDDV+NYF  YGPV DVRIPCQ++RMFGFV+F S +TV  IL + NPHF+CG+RVLVKPYREKSK VDR   + ++S + Y  P++ + D +L  ++   + SR +RK
Sbjct:  310 TPGSLETLEMEITELLNSRRGQPVSIASLPTLYGEKYGKGLQADGYLTESQRHGKAGYSLTRLLSRL-NKIRVIERPHGQHSVVLAEDAAKYMDFRGGGGGGGGDTGSVPASSHQIYLTFPAESTFAEDDVANYFGQYGPVRDVRIPCQERRMFGFVSFQSPETVSTILMRRNPHFICGSRVLVKPYREKSKCVDRTCVDNIKSMVPYCPPRFFEFDQEL--YTAEYDASRLMRK 541          
BLAST of CX069921 vs. ExPASy Swiss-Prot
Match: C3H51_ORYSJ (Putative zinc finger CCCH domain-containing protein 51 OS=Oryza sativa subsp. japonica GN=Os07g0583300 PE=4 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 4.859e-46
Identity = 94/173 (54.34%), Postives = 122/173 (70.52%), Query Frame = 3
Query:   84 PISIASLPMLYYEKYGKVLQAGGYLTESQRHGKAGYSLTKLLARLKNSVRLIDRPHGQHAVILAEDAPKY------LENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKL 584
            P+++  LP +Y+EKYGK L+  G+LTESQ+HG+ G SLT LL  L N++R+++R HGQ+ V+L EDA K       L +     D G   TGS QIY+TFP  S FT+DDV NYF  +GPV  VRIP Q+KRMFGFV+F   +TV++IL+KG  HF+CG RVLVK Y EKS+L
Sbjct:  236 PVAVDRLPSMYFEKYGKPLRPDGWLTESQQHGRTGCSLTSLLMGL-NTIRVVEREHGQYHVVLVEDARKKYMDCLGLAHSCNLMDTG---TGSNQIYMTFPVHSKFTDDDVENYFKQFGPVSGVRIPYQEKRMFGFVSFLYTETVRLILSKGTAHFICGLRVLVKRYMEKSEL 404          
BLAST of CX069921 vs. ExPASy Swiss-Prot
Match: C3H53_ORYSJ (Zinc finger CCCH domain-containing protein 53 OS=Oryza sativa subsp. japonica GN=Os07g0682400 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 4.267e-34
Identity = 74/113 (65.49%), Postives = 92/113 (81.42%), Query Frame = 3
Query:  276 EDAPKYLEN-RNERSDPGPIVT-GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKLVDRKYQER 608
            ++A K++   R ER+D   ++  GSRQIYLTFPA+STF E+DVSNYF+ YGPV DVRIP QQKRMFGFVTF   +TVK+ILAKGNPHF+C ARVLVKPY+EK K+ D KY+++
Sbjct:  336 DEAHKFMGRPRLERADFASMMNPGSRQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFICDARVLVKPYKEKGKVPD-KYRKQ 447          
BLAST of CX069921 vs. ExPASy Swiss-Prot
Match: C3H23_ORYSJ (Zinc finger CCCH domain-containing protein 23 OS=Oryza sativa subsp. japonica GN=Os03g0329200 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 5.573e-34
Identity = 77/133 (57.89%), Postives = 99/133 (74.44%), Query Frame = 3
Query:  261 AVILA--EDAPKYLEN-RNERSDPGPIVT-GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKLVDRKYQERMESPMYFSPQYVD 647
            A++LA  ++A K++   R +R D   ++  GSRQIYLTFPA+STF E+DVSNYF+ YGPV DVRIP QQKRMFGFVTF   +TVK+ILAKGNPHF+C ARVLVKPY+EK K+ D+  +++       SP  +D
Sbjct:  327 ALMLAGGDEAHKFMGRPRLDRVDFASMMNPGSRQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFICDARVLVKPYKEKGKVPDKYRKQQQGDFCCMSPTGLD 459          
BLAST of CX069921 vs. ExPASy Swiss-Prot
Match: C3H22_ORYSJ (Zinc finger CCCH domain-containing protein 22 OS=Oryza sativa subsp. japonica GN=Os03g0328900 PE=2 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 1.241e-33
Identity = 74/114 (64.91%), Postives = 91/114 (79.82%), Query Frame = 3
Query:  273 AEDAPKYLEN-RNERSDPGPIVT-GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKLVD--RKYQ 602
            +++A K++   R +R D   ++  GSRQIYLTFPA+STF E+DVSNYF+ YGPV DVRIP QQKRMFGFVTF   +TVK+ILAKGNPHF+C ARVLVKPY+EK K+ D  RK+Q
Sbjct:  340 SDEAHKFMGRPRLDRVDFASMMNPGSRQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFICDARVLVKPYKEKGKVPDKYRKHQ 453          
BLAST of CX069921 vs. ExPASy Swiss-Prot
Match: C3H46_ARATH (Zinc finger CCCH domain-containing protein 46 OS=Arabidopsis thaliana GN=At3g51950 PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.118e-33
Identity = 75/130 (57.69%), Postives = 92/130 (70.77%), Query Frame = 3
Query:  261 AVILAEDAPKYLENRNERSDPGPIVT-GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKLVDRKYQERMESPMYFSPQYVD 647
            A+++ ++  K    R ER D   +    SRQIYLTFPA+S F E+DVSNYF+T+GPV DVRIP QQKRMFGFVTF   +TVK ILAKGNPHFVC +RVLVKPY+EK K+ D KY+    +    SP  +D
Sbjct:  229 ALMIGDELQKLGRWRPERIDLSAMACPASRQIYLTFPADSRFREEDVSNYFSTFGPVQDVRIPYQQKRMFGFVTFVYPETVKSILAKGNPHFVCDSRVLVKPYKEKGKVPD-KYRTNQTTERELSPTGLD 357          
BLAST of CX069921 vs. ExPASy Swiss-Prot
Match: C3H55_ARATH (Zinc finger CCCH domain-containing protein 55 OS=Arabidopsis thaliana GN=At5g12440 PE=2 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 4.416e-31
Identity = 59/93 (63.44%), Postives = 80/93 (86.02%), Query Frame = 3
Query:  336 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKLVDRKYQERME 614
            + SRQIYLTFPA+STF ++DV+ YF+ +G V DVRIP QQKRMFGFV+FA  +TVK++LA+GNPHF+C +RVLVKPY+EK K++D+K Q+ ++
Sbjct:  256 SASRQIYLTFPADSTFKDEDVATYFSLFGTVQDVRIPYQQKRMFGFVSFAHPETVKVVLARGNPHFICDSRVLVKPYKEKGKVLDKKQQQLLQ 348          
The following BLAST results are available for this feature:
BLAST of CX069921 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
C3H18_ARATH4.076e-7761.28Zinc finger CCCH domain-containing protein 18 OS=A... [more]
C3H54_ORYSJ2.829e-7058.30Zinc finger CCCH domain-containing protein 54 OS=O... [more]
C3H51_ORYSJ4.859e-4654.34Putative zinc finger CCCH domain-containing protei... [more]
C3H53_ORYSJ4.267e-3465.49Zinc finger CCCH domain-containing protein 53 OS=O... [more]
C3H23_ORYSJ5.573e-3457.89Zinc finger CCCH domain-containing protein 23 OS=O... [more]
C3H22_ORYSJ1.241e-3364.91Zinc finger CCCH domain-containing protein 22 OS=O... [more]
C3H46_ARATH2.118e-3357.69Zinc finger CCCH domain-containing protein 46 OS=A... [more]
C3H55_ARATH4.416e-3163.44Zinc finger CCCH domain-containing protein 55 OS=A... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_13F09_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-13F09-K17-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069921 ID=CX069921; Name=CX069921; organism=Citrus sinensis; type=EST; length=834bp
CTGATGACCATCTTTTCTCACCTGGGTCACTTGAGAAGTTAGAGTTGGAA
ATCATTGAGCTTCTGAAAGCAAGAAGAGGAAATCCTATTTCAATTGCTTC
TCTGCCAATGTTGTATTATGAGAAGTATGGGAAAGTTCTTCAAGCAGGCG
GTTATCTTACCGAGAGCCAGAGGCATGGTAAAGCTGGTTACAGTTTGACC
AAGCTTCTAGCTAGACTGAAGAACAGTGTCCGGTTGATCGACAGACCTCA
TGGGCAACATGCAGTGATTTTGGCTGAAGATGCACCAAAATACTTGGAGA
ATCGGAATGAGCGAAGTGATCCTGGTCCAATTGTTACTGGATCCCGGCAG
ATATATCTAACCTTTCCAGCTGAGAGCACTTTTACAGAAGATGATGTCTC
CAACTACTTCAACACCTATGGACCTGTCGACGATGTAAGAATTCCATGCC
AACAGAAACGGATGTTTGGATTTGTAACCTTTGCCAGTGCAGATACTGTG
AAAATGATTTTGGCAAAGGGAAATCCTCATTTTGTTTGTGGGGCTCGGGT
TCTCGTGAAACCTTACCGGGAGAAATCCAAGCTTGTTGATAGGAAGTACC
AAGAGAGAATGGAGTCGCCAATGTATTTTTCTCCGCAGTATGTTGATATG
GATTCTGATCTTCACTCATTTTCACGAGGATGCGAAACTTCTAGGTTTAT
CAGGAAGCAGCTTTTGGAAGAGCAGGAACAGGCCTTTGAACTTGAGAGGA
GGCGTCTTGCAGAGCTTCAATTAGTCCGAAAACCTATGCCCAATCCACCA
TATTTTGGCGGCTACATGGATGGCTTGAAAATCT
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