CX069836

Overview
NameCX069836
Unique NameCX069836
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length837
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4629 contig Csv1_Contig4629:590..1426. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
BLAST of CX069836 vs. ExPASy Swiss-Prot
Match: LTRA_LACLM (Group II intron-encoded protein ltrA OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=ltrA PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.136e-25
Identity = 71/183 (38.80%), Postives = 103/183 (56.28%), Query Frame = -3
Query:  191 KK*GSKFRPLTVVLPIEKIMKEAIRMVLESIYDPEFPDTSH-FRSGRGCHSVLRRIKEEWGISRWFLEFDIRKCFHTIDRHRLIPIFKEEIDDPKFFYPIQKVFSAGRLVGGE--KGPYSVPHSVLLSALPGNIYLHKLDQEIGRIRQKYEIPIVQRI----RSVLLRTGRIDDQEKENSGED 718
            KK   K RPL +    +K+++EA+R++LESIY+P F D SH FR  R CH+ L+ IK E+G +RWF+E DI+ CF  ID   LI +   +I D K    I K   AG L   +  K     P   +LS L  NIYLH+LD+ + +++ K++    +RI    R +     RI  + K+  GE+
Sbjct:   91 KKNSKKMRPLGIPTFTDKLIQEAVRIILESIYEPVFEDVSHGFRPQRSCHTALKTIKREFGGARWFVEGDIKGCFDNIDHVTLIGLINLKIKDMKMSQLIYKFLKAGYLENWQYHKTYSGTPQGGILSPLLANIYLHELDKFVLQLKMKFDRESPERITPEYRELHNEIKRISHRLKKLEGEE 273          
BLAST of CX069836 vs. ExPASy Swiss-Prot
Match: LTRA_LACLC (Group II intron-encoded protein ltrA OS=Lactococcus lactis subsp. cremoris GN=ltrA PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.136e-25
Identity = 71/183 (38.80%), Postives = 103/183 (56.28%), Query Frame = -3
Query:  191 KK*GSKFRPLTVVLPIEKIMKEAIRMVLESIYDPEFPDTSH-FRSGRGCHSVLRRIKEEWGISRWFLEFDIRKCFHTIDRHRLIPIFKEEIDDPKFFYPIQKVFSAGRLVGGE--KGPYSVPHSVLLSALPGNIYLHKLDQEIGRIRQKYEIPIVQRI----RSVLLRTGRIDDQEKENSGED 718
            KK   K RPL +    +K+++EA+R++LESIY+P F D SH FR  R CH+ L+ IK E+G +RWF+E DI+ CF  ID   LI +   +I D K    I K   AG L   +  K     P   +LS L  NIYLH+LD+ + +++ K++    +RI    R +     RI  + K+  GE+
Sbjct:   91 KKNSKKMRPLGIPTFTDKLIQEAVRIILESIYEPVFEDVSHGFRPQRSCHTALKTIKREFGGARWFVEGDIKGCFDNIDHVTLIGLINLKIKDMKMSQLIYKFLKAGYLENWQYHKTYSGTPQGGILSPLLANIYLHELDKFVLQLKMKFDRESPERITPEYRELHNEIKRISHRLKKLEGEE 273          
BLAST of CX069836 vs. ExPASy Swiss-Prot
Match: YMC6_SCHPO (Uncharacterized 91 kDa protein in cob intron OS=Schizosaccharomyces pombe GN=SPMIT.06 PE=4 SV=4)

HSP 1 Score: 102.834 bits (255), Expect = 2.444e-21
Identity = 55/145 (37.93%), Postives = 87/145 (60.00%), Query Frame = -3
Query:  275 RPLTVVLPIEKIMKEAIRMVLESIYDPEFPDTSH-FRSGRGCHSVLRRIKEEWGISRWFLEFDIRKCFHTIDRHRLIPIFKEEIDDPKFFYPIQKVFSAGRLVGGEKGPYSV---PHSVLLSALPGNIYLHKLDQEIGRIRQKYE 697
            RPLT+  P +K+++E +R+VLE+IY+P F   SH FR GR CHS LR I   +    W++E DI+ CF +I   +LI +   +I D +F   I+K  +AG L    +  Y +   P   ++S +  NIYLH+LD+ I  ++ +++
Sbjct:  308 RPLTIGSPRDKLVQEILRIVLEAIYEPLFNTASHGFRPGRSCHSALRSIFTNFKGCTWWIEGDIKACFDSIPHDKLIALLSSKIKDQRFIQLIRKALNAGYLT-ENRYKYDIVGTPQGSIVSPILANIYLHQLDEFIENLKSEFD 451          
BLAST of CX069836 vs. ExPASy Swiss-Prot
Match: YMF40_MARPO (Uncharacterized mitochondrial protein ymf40 OS=Marchantia polymorpha GN=YMF40 PE=4 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.651e-17
Identity = 53/146 (36.30%), Postives = 79/146 (54.11%), Query Frame = -3
Query:  278 KFRPLTVVLPIEKIMKEAIRMVLESIYDPEFPDTSH-FRSGRGCHSVLRRIKEEWGISRWFLEFDIRKCFHTIDRHRLIPIFKEEIDDPKFFYPIQKVFSAGRLVGGEKGPY---SVPHSVLLSALPGNIYLHKLDQEIGRIRQKY 703
            K R L +  P +KI++E +R +LE +++P F D+SH FR  R  H+ LR+I+  W  + W +E DI+  F  ID H L     E + D +      K+  AG +  G+  P+    VP   +LS L  NIYLH+ D  +  I+ KY
Sbjct:   74 KLRSLGIPSPRDKIVQEVMRRILEPVFEPRFLDSSHGFRPHRSPHTALRQIR-RWTGTSWMIEGDIKGYFDNIDHHLLAGFIAELVKDQRLLALYWKLVRAGYVNQGKAEPHLLTGVPQGRILSPLLSNIYLHQFDLFMEEIKVKY 218          
BLAST of CX069836 vs. ExPASy Swiss-Prot
Match: AI1M_YEAST (Putative COX1/OXI3 intron 1 protein OS=Saccharomyces cerevisiae GN=aI1 PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 5.830e-15
Identity = 47/136 (34.56%), Postives = 74/136 (54.41%), Query Frame = -3
Query:  308 RPLTVVLPIEKIMKEAIRMVLESIYDPEFPDTSH-FRSGRGCHSVLRRIKEEWGISRWFLEFDIRKCFHTIDRHRLIPIFKEEIDDPKFFYPIQKVFSAGRLVGGEKGPY-----SVPHSVLLSALPGNIYLHKLD 697
            RPL+V  P +KI++E +RM+L++I+D +    SH FR    C + +  ++  +G S WF+E D++KCF TI    +I   K  I D  F   + K+  AG +   EKG Y      +P   L+S +  NI +  +D
Sbjct:  323 RPLSVGNPRDKIVQEVMRMILDTIFDKKMSTHSHGFRKNMSCQTAIWEVRNMFGGSNWFIEVDLKKCFDTISHDLIIKELKRYISDKGFIDLVYKLLRAGYI--DEKGTYHKPMLGLPQGSLISPILCNIVMTLVD 456          
BLAST of CX069836 vs. ExPASy Swiss-Prot
Match: AI2M_YEAST (Putative COX1/OXI3 intron 2 protein OS=Saccharomyces cerevisiae GN=aI2 PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 9.944e-15
Identity = 58/193 (30.05%), Postives = 90/193 (46.63%), Query Frame = -3
Query:  191 FRPLTVVLPIEKIMKEAIRMVLESIYDPEFPDTSH-FRSGRGCHSVLRRIKEEWGISRWFLEFDIRKCFHTIDRHRLIPIFKEEIDDPKFFYPIQKVFSAGRLVGG---EKGPYSVPHSVLLSALPGNIYLHKLDQEI----------GRIRQKYEIPIVQRIRSVL---------LRTGRIDDQEKENSGED 700
            FRPL+V  P EKI++E++RM+LE IY+  F   SH FR    C + + + K       WF++ D+ KCF TI  + LI +  E I D  F   + K+  AG +            +P   ++S +  NI+L KLD+ +          G +  +   PI   + S +         L+  R+ D  + N G D
Sbjct:  355 FRPLSVGNPREKIVQESMRMMLEIIYNNSFSYYSHGFRPNLSCLTAIIQCKNYMQYCNWFIKVDLNKCFDTIPHNMLINVLNERIKDKGFMDLLYKLLRAGYVDKNNNYHNTTLGIPQGSVVSPILCNIFLDKLDKYLENKFENEFNTGNMSNRGRNPIYNSLSSKIYRCKLLSEKLKLIRLRDHYQRNMGSD 547          
BLAST of CX069836 vs. ExPASy Swiss-Prot
Match: YMF11_MARPO (Uncharacterized mitochondrial protein ymf11 OS=Marchantia polymorpha GN=YMF11 PE=4 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.670e-11
Identity = 40/128 (31.25%), Postives = 69/128 (53.91%), Query Frame = -3
Query:  284 IMKEAIRMVLESIYDPEFPDTSH-FRSGRGCHSVLRRIKEEWGISRWFLEFDIRKCFHTIDRHRLIPIFKEEIDDPKFFYPIQKVFSAGRLVGGEKGPYSVPHSVLLSALPGNIYLHKLDQEIGRIRQ 664
            +++E IR +LE++Y+P F   SH FR GR  H+ L++I+ ++  + WF+E +  + F+ ID+  LI + +  I D +F   +QK        G E           +  L  NI LH+LD  + R+++
Sbjct:  246 LVQEVIRSILETLYEPYFLSCSHGFRPGRSQHTCLKQIRRDFVGTVWFIEGETSQYFNKIDKQVLIGLMRRRIRDNRFLNLVQKEIKTSLRAGAE--------GTGVGPLLCNIVLHELDLFVMRLKR 365          
The following BLAST results are available for this feature:
BLAST of CX069836 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
LTRA_LACLM2.136e-2538.80Group II intron-encoded protein ltrA OS=Lactococcu... [more]
LTRA_LACLC2.136e-2538.80Group II intron-encoded protein ltrA OS=Lactococcu... [more]
YMC6_SCHPO2.444e-2137.93Uncharacterized 91 kDa protein in cob intron OS=Sc... [more]
YMF40_MARPO3.651e-1736.30Uncharacterized mitochondrial protein ymf40 OS=Mar... [more]
AI1M_YEAST5.830e-1534.56Putative COX1/OXI3 intron 1 protein OS=Saccharomyc... [more]
AI2M_YEAST9.944e-1530.05Putative COX1/OXI3 intron 2 protein OS=Saccharomyc... [more]
YMF11_MARPO6.670e-1131.25Uncharacterized mitochondrial protein ymf11 OS=Mar... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_13B07_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-13B07-C13-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069836 ID=CX069836; Name=CX069836; organism=Citrus sinensis; type=EST; length=837bp
GCTTGTTAAGGAAGGCGGCTAGGGCCGACGAAGGGGGGAAAACGAAAGGC
GTTTTCTGGTTCCACCTGAGCCGGGGGGTGCTTGTGGGGGGGGTGTGCCA
CGACGAAACAAGGGAATGAAAGGCCGCTTTGCGTTGGATGCTCTTTACCC
TCCCCACACTGATGGCTCTGCTGTCTTGGGGAGCGTTGAAGTCTTCTCCA
GAGTTTTCTTTTTCTTGGTCATCAATACGACCTGTCCTTAATAGAACCGA
TCTTATTCTCTGAACAATCGGAATTTCGTACTTCTGTCGGATCCTCCCTA
TCTCCTGATCGAGCTTGTGTAGGTAGATGTTGCCTGGTAGGGCCGATAGT
AGTACACTGTGTGGGACGGAGTAAGGGCCCTTCTCACCTCCTACGAGTCG
TCCGGCGGAAAAGACTTTCTGAATGGGGTAAAAGAACTTGGGATCGTCGA
TCTCTTCCTTAAAGATTGGGATGAGTCGATGTCGGTCGATGGTGTGAAAA
CACTTCCTGATGTCGAATTCTAAAAACCAGCGAGAGATTCCCCACTCTTC
TTTGATCCGTCTTAGGACCGAGTGGCAGCCTCGACCCGAGCGGAAGTGCG
ATGTGTCTGGAAACTCGGGATCGTAAATGGATTCGAGTACCATTCTGATC
GCCTCTTTCATGATCTTTTCTATAGGTAGAACTACTGTGAGCGGTCTAAA
CTTCGACCCTTATTTCTTTCTTCATATTGTATTGGGGAGCAAAGCCCGTT
TTTTGCTCCCTTTATTGATAATCAAGGGCCCTCCAGCCGTCGTTTCAGTG
ACTCATAGGGGGGCTTCCGTCAGCTCAGTCTTTTTGG
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