CX069811

Overview
NameCX069811
Unique NameCX069811
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length825
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX069811 vs. ExPASy Swiss-Prot
Match: NU2M_ARATH (NADH-ubiquinone oxidoreductase chain 2 OS=Arabidopsis thaliana GN=ND2 PE=2 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 5.659e-25
Identity = 51/52 (98.08%), Postives = 51/52 (98.08%), Query Frame = -1 
Query:  613 HMFNLFLAVFPEIFIINATFILLIHGVVFSTSKKYDYPPLVSNVGWLGLLSV 768
            HMFNLFLAVFPEIFIINATFILLIHGVVFSTSKKYDYPPL SNVGWLGLLSV
Sbjct:   11 HMFNLFLAVFPEIFIINATFILLIHGVVFSTSKKYDYPPLASNVGWLGLLSV 62

HSP 2 Score: 28.4906 bits (62), Expect = 5.659e-25
Identity = 12/16 (75.00%), Postives = 14/16 (87.50%), Query Frame = -3 
Query:  749 MKAEFVRILPHVQSFF 796
            MKAEFVRILPH+ + F
Sbjct:    1 MKAEFVRILPHMFNLF 16
[Close]
BLAST of CX069811 vs. ExPASy Swiss-Prot
Match: NU2M_OENBE (NADH-ubiquinone oxidoreductase chain 2 OS=Oenothera bertiana GN=ND2 PE=2 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 5.343e-21
Identity = 50/51 (98.04%), Postives = 50/51 (98.04%), Query Frame = -1 
Query:  613 MFNLFLAVFPEIFIINATFILLIHGVVFSTSKKYDYPPLVSNVGWLGLLSV 765
            MFNLFLAVFPEIFIINATFILLIHGVVFSTSKK DYPPLVSNVGWLGLLSV
Sbjct:    1 MFNLFLAVFPEIFIINATFILLIHGVVFSTSKKDDYPPLVSNVGWLGLLSV 51
[Close]
BLAST of CX069811 vs. ExPASy Swiss-Prot
Match: NU2M_MARPO (NADH-ubiquinone oxidoreductase chain 2 OS=Marchantia polymorpha GN=ND2 PE=3 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 3.584e-17
Identity = 42/47 (89.36%), Postives = 45/47 (95.74%), Query Frame = -1 
Query:  613 FLAVFPEIFIINATFILLIHGVVFSTSKKYDYPPLVSNVGWLGLLSV 753
            FLA+FPEIF+INAT ILLI+GVVFSTSKKYDYPPLV NVGWLGLLSV
Sbjct:    6 FLALFPEIFLINATIILLIYGVVFSTSKKYDYPPLVRNVGWLGLLSV 52
The following BLAST results are available for this feature:
BLAST of CX069811 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
NU2M_ARATH5.659e-2598.08NADH-ubiquinone oxidoreductase chain 2 OS=Arabidop... [more]
NU2M_OENBE5.343e-2198.04NADH-ubiquinone oxidoreductase chain 2 OS=Oenother... [more]
NU2M_MARPO3.584e-1789.36NADH-ubiquinone oxidoreductase chain 2 OS=Marchant... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_12H10_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12H10-P20-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069811 ID=CX069811; Name=CX069811; organism=Citrus sinensis; type=EST; length=825bp
GCATTTAGTTGTCTTACCTTAAAGTCGGGATATTCCTCACTCCATGGCGC
CTTTCGCTCTTCCATTCCGCCCGCCCGTCCAGACGCGGCGCCCTTTTTCA
TTATCATCTACCGCCCTTTCTTTCCTCCCGGCTATTCACGCATGAAGATC
GTCGTATGTATGCTCGACTTCGGTTGCCGGTAGGAGTACATTATGGCAGG
ATCAGTCACCCGGGCAAACCAACCCTCCTCCAAGAAGAATTGTGCTATGC
CCCCCCGATCCCTATAGAGCGAAAGAGCTGCCTGGTGATCCCTAGGTTGC
AGCACGTCCGGTCGTTAACTCCTCGCGCCGCTGCCGCCGTTTCTAGGACC
GACCGACGCCTCACCTGCACAGGTACCTACGTAGTGTAGTGTCGGTCGCA
CATTCAACATAGCGTTCGGACTCATGTGCCTTCCAGAACCAGGGGTCTTC
GAGCCTGCTGCGTACGATTAGCCAGCCTTGCGGCGGCAAAAGGATTAGAC
GTCTCCCCATGCTACGGTTCCCTGCGGTCCGAACCCGGTGCCGCATTAGG
TTAGGGGACTGGGCGATAATAGCTCCTCCGCATCCCAAAGCGCGCTGCCC
TCCTAGGCGCGCAACACTAAGTAATCCAAGCCAACCCACATTACTGACTA
ACGGCGGATAATCATATTTCTTAGAGGTACTAAATACAACTCCATGAATG
AGCAAAATAAAGGTTGCATTAATGATAAAGATCTCTGGAAAAACCGCTAA
AAAAAGATTGAACATGTGGGAGGATCCGAACGAATTCTGCTTTCATTTCC
CCCCGTATGGAGCACTGAGTTACTT
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