CX069802 | Citrus Genome Database

Overview


Name	CX069802
Unique Name	CX069802
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	856

Libraries


Library Name	Type
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig3085	contig	Csv1_Contig3085:1..856.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CX069802 vs. ExPASy Swiss-Prot
Match: ATPAM_SOYBN (ATP synthase subunit alpha, mitochondrial OS=Glycine max GN=ATPA PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 4.587e-31
Identity = 68/75 (90.67%), Postives = 71/75 (94.67%), Query Frame = -2

Query:  631 KRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 855
            KRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGS   + A++Q
Sbjct:  314 KRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSAAQLKAMKQ 388

[Close]

BLAST of CX069802 vs. ExPASy Swiss-Prot
Match: ATPAM_RAPSA (ATP synthase subunit alpha, mitochondrial OS=Raphanus sativus GN=ATPA PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 4.587e-31
Identity = 68/75 (90.67%), Postives = 71/75 (94.67%), Query Frame = -2

Query:  631 KRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 855
            KRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGS   + A++Q
Sbjct:  314 KRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSAAQLKAMKQ 388

[Close]

BLAST of CX069802 vs. ExPASy Swiss-Prot
Match: ATPAM_PHAVU (ATP synthase subunit alpha, mitochondrial OS=Phaseolus vulgaris GN=ATPA PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 4.587e-31
Identity = 68/75 (90.67%), Postives = 71/75 (94.67%), Query Frame = -2

Query:  631 KRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 855
            KRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGS   + A++Q
Sbjct:  314 KRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSAAQLKAMKQ 388

[Close]

BLAST of CX069802 vs. ExPASy Swiss-Prot
Match: ATPAM_PEA (ATP synthase subunit alpha, mitochondrial OS=Pisum sativum GN=ATPA PE=3 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 4.587e-31
Identity = 68/75 (90.67%), Postives = 71/75 (94.67%), Query Frame = -2

Query:  631 KRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 855
            KRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGS   + A++Q
Sbjct:  314 KRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSAAQLKAMKQ 388

[Close]

BLAST of CX069802 vs. ExPASy Swiss-Prot
Match: ATPAM_ORYSJ (ATP synthase subunit alpha, mitochondrial OS=Oryza sativa subsp. japonica GN=ATPA PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 4.587e-31
Identity = 68/75 (90.67%), Postives = 71/75 (94.67%), Query Frame = -2

Query:  631 KRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 855
            KRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGS   + A++Q
Sbjct:  314 KRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSAAQLKAMKQ 388

[Close]

BLAST of CX069802 vs. ExPASy Swiss-Prot
Match: ATPAM_ORYSI (ATP synthase subunit alpha, mitochondrial OS=Oryza sativa subsp. indica GN=ATPA PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 4.587e-31
Identity = 68/75 (90.67%), Postives = 71/75 (94.67%), Query Frame = -2

Query:  631 KRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 855
            KRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGS   + A++Q
Sbjct:  314 KRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSAAQLKAMKQ 388

[Close]

BLAST of CX069802 vs. ExPASy Swiss-Prot
Match: ATPAM_ORYSA (ATP synthase subunit alpha, mitochondrial OS=Oryza sativa GN=ATPA PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 4.587e-31
Identity = 68/75 (90.67%), Postives = 71/75 (94.67%), Query Frame = -2

Query:  631 KRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 855
            KRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGS   + A++Q
Sbjct:  314 KRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSAAQLKAMKQ 388

[Close]

BLAST of CX069802 vs. ExPASy Swiss-Prot
Match: ATPAM_OENBI (ATP synthase subunit alpha, mitochondrial OS=Oenothera biennis GN=ATPA PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 4.587e-31
Identity = 68/75 (90.67%), Postives = 71/75 (94.67%), Query Frame = -2

Query:  631 KRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 855
            KRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGS   + A++Q
Sbjct:  314 KRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSAAQLKAMKQ 388

[Close]

BLAST of CX069802 vs. ExPASy Swiss-Prot
Match: ATPAM_MAIZE (ATP synthase subunit alpha, mitochondrial OS=Zea mays GN=ATPA PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 4.587e-31
Identity = 68/75 (90.67%), Postives = 71/75 (94.67%), Query Frame = -2

Query:  631 KRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 855
            KRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGS   + A++Q
Sbjct:  314 KRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSAAQLKAMKQ 388

[Close]

BLAST of CX069802 vs. ExPASy Swiss-Prot
Match: ATPAM_BRANA (ATP synthase subunit alpha, mitochondrial OS=Brassica napus GN=ATPA PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 4.587e-31
Identity = 68/75 (90.67%), Postives = 71/75 (94.67%), Query Frame = -2

Query:  631 KRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSIVNVSALQQ 855
            KRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGS   + A++Q
Sbjct:  314 KRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSAAQLKAMKQ 388

The following BLAST results are available for this feature:

BLAST of CX069802 vs. ExPASy Swiss-Prot

BLAST of CX069802 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
ATPAM_SOYBN	4.587e-31	90.67	ATP synthase subunit alpha, mitochondrial OS=Glyci...	[more]
ATPAM_RAPSA	4.587e-31	90.67	ATP synthase subunit alpha, mitochondrial OS=Rapha...	[more]
ATPAM_PHAVU	4.587e-31	90.67	ATP synthase subunit alpha, mitochondrial OS=Phase...	[more]
ATPAM_PEA	4.587e-31	90.67	ATP synthase subunit alpha, mitochondrial OS=Pisum...	[more]
ATPAM_ORYSJ	4.587e-31	90.67	ATP synthase subunit alpha, mitochondrial OS=Oryza...	[more]
ATPAM_ORYSI	4.587e-31	90.67	ATP synthase subunit alpha, mitochondrial OS=Oryza...	[more]
ATPAM_ORYSA	4.587e-31	90.67	ATP synthase subunit alpha, mitochondrial OS=Oryza...	[more]
ATPAM_OENBI	4.587e-31	90.67	ATP synthase subunit alpha, mitochondrial OS=Oenot...	[more]
ATPAM_MAIZE	4.587e-31	90.67	ATP synthase subunit alpha, mitochondrial OS=Zea m...	[more]
ATPAM_BRANA	4.587e-31	90.67	ATP synthase subunit alpha, mitochondrial OS=Brass...	[more]

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Properties


Property Name	Value
Genbank description	UCRCS08_12H04_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12H04-P8-1-5.b, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX069802 ID=CX069802; Name=CX069802; organism=Citrus sinensis; type=EST; length=856bp
ATTGTTAATAGCTCGTCTCACTCGCCTATATGGGAGACTTTGGCGAGTCC
CATTTCGTTCGATTTGCTCTAGATGGGAGAGCAAAGTGCGTTGGGATAAT
AGAGGGTTCTCCCTGTCGCTATTAGTATGATTAAAGAGCACCCCCCGTAT
ATCCGGTAAGTTATGAAAGATTCTCCACGGAGAGAACCCATCATCAATTA
ACGCGGATTCGATTCGTTTCTCAATTCGAAAATGAGACTCTAAAATCTCT
AAGAAGGATGGTAGGTGAGCAGAAGTGTGCTTTCCTACGAAATATAAAGA
AAGCCTCCGCGCTAGAATCTGTCTGCGGATAGAATCCTGCAGTAGCGGCG
GGTGTTCCGGGATTACCGGGGGAGAGGGGGGTTCAACGGGTACTGTTTCT
TGGCCGTGAGGAGGTCCCTCTTGCGCTTGGGCAAGCCAATCCACAATTGG
AGGTGAATCGATCTGCCCGTCGCAGAAGGCTAGAGGTATAGTACTCTGAA
AAGAAATAAGAATGAAGAAGATAAAACCCCACATTAAGATTTTAATTGGG
TTTTTTCTTTTAAAAATATCATTAGTGGATTCCCATTGGTTAGGAGAACC
CAAAGGCAAAGGCGTGATCGTGAAAATTTTTTGTTGGAGCGCGGAAACAT
TCACAATAGAGCCAACGCGACTGACAGATAAGCCGACGTTAATAGCGGGT
CTAATTCCGCGATAAAAGAGCTCTGTTTCCAAACAAATTTGTCCGTCAGT
AATTGAAATAACATTTGTAGGAATATAAGCCGATACATCTCCAGCTTGTG
TTTCAATGACGGGTAAGGCGGTCAAGCTACCTGCACCTGTCTGGTCCGAT
CGTTTC