CX069710

Overview
NameCX069710
Unique NameCX069710
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length854
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7882 contig Csv1_Contig7882:50..903. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX069710 vs. ExPASy Swiss-Prot
Match: P2C06_ARATH (Probable protein phosphatase 2C 6 OS=Arabidopsis thaliana GN=At1g16220 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 7.796e-23
Identity = 66/138 (47.83%), Postives = 82/138 (59.42%), Query Frame = -3
Query:  448 DDCAVVCLFLEHSSAVNGSVEEDSTTEPPHE-AAERVAVTDGKNTALDVPGDSHALAVDNLRNLQGSSEIVPVPESTEKFFVKSQG--QSKRSLAECISTAEDEEWSALEGVTRVNSLLSLPRFSSGDKRSASWRNWL 852
            DDCAVVCLFLE +SA  G+VE   T    HE + E V +T  K+        +             ++E VPV E  E+   +S      K +LAECIS  +DEEWSALEG+TRVNSLLS+PRF SG+ RS+SWR WL
Sbjct:  367 DDCAVVCLFLEDTSA-GGTVEVSETVNHSHEESTESVTITSSKDADKKEEASTE------------TNETVPVWEIKEEKTPESCRIESKKTTLAECISVKDDEEWSALEGLTRVNSLLSIPRFFSGELRSSSWRKWL 491          
BLAST of CX069710 vs. ExPASy Swiss-Prot
Match: P2C66_ORYSJ (Probable protein phosphatase 2C 66 OS=Oryza sativa subsp. japonica GN=Os08g0500300 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.126e-21
Identity = 67/142 (47.18%), Postives = 86/142 (60.56%), Query Frame = -3
Query:  457 DDCAVVCLFLEHSSAVNGSVEEDSTTEPPHEAAERVAVTD--GKNTALDVPGDSHALAVDNLRN--------LQGSSEIVPVPESTEKFFVKSQGQSKRSLAECISTAEDEEWSALEGVTRVNSLLSLPRFSSGDKRSASWR 852
            DDCAVVCLFL+H+ + +  ++E+ + E   E  E VA+ D   K       GD+H  + + +          L+   EIVPV E       +  G S RSLA+CIST E+EEWSALEGVTRVNSLL+LPR  SG+KRS SWR
Sbjct:  392 DDCAVVCLFLDHAKSPD-LIQENESEE---ETTEDVAIPDTVAKVDQDIAQGDAHISSEEQITEPALQHSYTLRDVDEIVPVEEPPVSKEPERCG-SARSLADCISTNEEEEWSALEGVTRVNSLLNLPRILSGEKRSTSWR 528          
BLAST of CX069710 vs. ExPASy Swiss-Prot
Match: P2C18_ARATH (Probable protein phosphatase 2C 18 OS=Arabidopsis thaliana GN=At1g79630 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.987e-18
Identity = 63/141 (44.68%), Postives = 80/141 (56.74%), Query Frame = -3
Query:  448 DDCAVVCLFLEHSSA---VNGSVEEDSTTEPPHEAAERVAVTDGKNTALDVPGDSHALAVDNLRNLQGSSEIVPVPEST--EKFFVKSQGQSKRSLAECISTAED-EEWSALEGVTRVNSLLSLPRFSSGDKRSASWRNWL 852
            DDC VVCLFL+ SS    V+ +V++DS   P  E+ E V  +  K                         EIVPV +    E   ++S+  +  +LAECIS A+D EEWSALEG+TRVNSLLS+PRF SG+ RS SWR WL
Sbjct:  390 DDCTVVCLFLQDSSVAMEVSTNVKKDS---PKEESIESVTNSTSKE----------------------EDEIVPVKDEKIPESCGIESKMMTM-TLAECISVAQDDEEWSALEGLTRVNSLLSIPRFLSGELRSTSWRKWL 504          
The following BLAST results are available for this feature:
BLAST of CX069710 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
P2C06_ARATH7.796e-2347.83Probable protein phosphatase 2C 6 OS=Arabidopsis t... [more]
P2C66_ORYSJ1.126e-2147.18Probable protein phosphatase 2C 66 OS=Oryza sativa... [more]
P2C18_ARATH1.987e-1844.68Probable protein phosphatase 2C 18 OS=Arabidopsis ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_12C11_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12C11-F22-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069710 ID=CX069710; Name=CX069710; organism=Citrus sinensis; type=EST; length=854bp
TTTTTTTTTTTTTTTTTAGCGTACAACATTTTGCCATGCCATATGCATAT
ATATTTTTTGTTCAATCTAGCAACAATAAAATAGATAAACAGATCAACGA
AAAGAAAAAAGCGTCTTCTATGAATTTTGAGGCTTACATGTTTATGAGAC
AGTTGAAAATGCCAAGTCTAGCAAAGCTCAGTCTAACGGACAACATAGAT
CTTCGAACTCCAAATTGATGGTAACACCAACAAAACATGCGTGGTCTCCC
TTCAAAGTACGAAGAATCCCTTCAAGTTTCCAGCTCTAACAATGGAGAGT
CACTATATGTTTCCATAGTCGTAGTTATTAACATTTGGCAACTGCAATCC
TACAAAATTTCTTACTTTGAAGGGAGACCACGTGGAATTGCTGAAGCCCC
AGTTCGTTGTGATTAAAACAAGGGAATAACTGCTTTTAGATGTGTCATAA
CCAATTTCTCCAACTTGCTGATCTTTTATCACCAGACGAGAACCTGGGAA
GGCTTAGCAGACTATTAACCCTGGTAACACCTTCTAAAGCTGACCACTCC
TCATCCTCAGCAGTAGAAATACACTCGGCTAGGCTCCTCTTTGATTGGCC
CTGGCTCTTCACAAAAAACTTTTCTGTTGACTCTGGGACGGGAACAATCT
CAGAAGAACCCTGTAAATTTCTCAAATTATCAACAGCCAATGCATGAGAA
TCGCCGGGGACATCTAAGGCCGTATTTTTCCCATCAGTCACTGCCACCCT
TTCTGCTGCCTCATGAGGAGGCTCTGTTGTGCTGTCTTCTTCCACAGATC
CATTGACTGCAGATGAATGTTCCAGAAAGAGGCATACAACAGCACAATCA
TCAT
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