DR403955

Overview
NameDR403955
Unique NameDR403955
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length708
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6149 contig Csv1_Contig6149:1..709. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403955 vs. ExPASy Swiss-Prot
Match: ACCH1_ARATH (1-aminocyclopropane-1-carboxylate oxidase homolog 1 OS=Arabidopsis thaliana GN=At1g06620 PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.005e-43
Identity = 91/226 (40.27%), Postives = 136/226 (60.18%), Query Frame = 2
Query:    5 DRATEVKQFDDSKIGVKGLVDSGVTTIPRFFIHSPDTLSDIRRPNSTTQPDPDVVPIVDLSGVDSD-LLRPTIVEKIARTSRELGFFQIVNHGIGVEVLERVIGAIKGFHEQPTEVKARFYRRDMKTGVSFFSNVDLFQSKAASWRDTLQVRLGPTLPELDEIPEICRHEVVEWDQHVTKXXXXXXXXXXXXXXVEKERLKELTFLDSKVMVAHYYPYCPQSDLTV 679
            DR+T +K FD++K GVKGL+D+G+T IP  F   P TL+  + P+S+       +P +DL G  +D + R ++VEKI   + + GFFQ++NHGI ++VLE++I  I+ FHEQ TEVK  FY RD  + + + SN DLF S AA+WRDTL     P  P  +++P  C   ++E+ + V K              +    LK++   +S +++ HYYP CPQ DLT+
Sbjct:   12 DRSTLLKAFDETKTGVKGLIDAGITEIPSIFRAPPATLTSPKPPSSSDFS----IPTIDLKGGGTDSITRRSLVEKIGDAAEKWGFFQVINHGIPMDVLEKMIDGIREFHEQDTEVKKGFYSRDPASKMVYSSNFDLFSSPAANWRDTLGCYTAPDPPRPEDLPATCGEMMIEYSKEVMKLGKLLFELLSEALGLNTNHLKDMDCTNSLLLLGHYYPPCPQPDLTL 233          
BLAST of DR403955 vs. ExPASy Swiss-Prot
Match: GSL_ARATH (Probable 2-oxoacid dependent dioxygenase OS=Arabidopsis thaliana GN=GSL-OH PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 7.202e-42
Identity = 86/225 (38.22%), Postives = 133/225 (59.11%), Query Frame = 2
Query:    5 DRATEVKQFDDSKIGVKGLVDSGVTTIPRFFIHSPDTLSDIRRPNSTTQPDPDVVPIVDLSGV-DSDLLRPTIVEKIARTSRELGFFQIVNHGIGVEVLERVIGAIKGFHEQPTEVKARFYRRDMKTGVSFFSNVDLFQSKAASWRDTLQVRLGPTLPELDEIPEICRHEVVEWDQHVTKXXXXXXXXXXXXXXVEKERLKELTFLDSKVMVAHYYPYCPQSDLT 676
            DRA+E+K FD+ KIGVKGLVD+GVT +PR F H+P       +P ST      ++P +DL GV +S ++R ++V K+     + GFFQ +NHG+ ++V+E++I  I+ FH+Q  EV+  FY RD    + + SN DL++S AASWRDTL   + P +P+  ++PE+C   ++E+ + V K              +    LKE+       M+ H +P CP+ + T
Sbjct:    6 DRASELKAFDEMKIGVKGLVDAGVTKVPRIF-HNPHVNVANPKPTSTVV----MIPTIDLGGVFESTVVRESVVAKVKDAMEKFGFFQAINHGVPLDVMEKMINGIRRFHDQDPEVRKMFYTRDKTKKLKYHSNADLYESPAASWRDTLSCVMAPDVPKAQDLPEVCGEIMLEYSKEVMKLAELMFEILSEALGLSPNHLKEMDCAKGLWMLCHCFPPCPEPNRT 225          
BLAST of DR403955 vs. ExPASy Swiss-Prot
Match: ACCH3_ARATH (1-aminocyclopropane-1-carboxylate oxidase homolog 4 OS=Arabidopsis thaliana GN=At1g06650 PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 9.407e-42
Identity = 85/227 (37.44%), Postives = 128/227 (56.39%), Query Frame = 2
Query:    5 DRATEVKQFDDSKIGVKGLVDSGVTTIPRFFIHSPDTLSDIRRPNSTTQPDPDVVPIVDLSGVDSD--LLRPTIVEKIARTSRELGFFQIVNHGIGVEVLERVIGAIKGFHEQPTEVKARFYRRDMKTGVSFFSNVDLFQSKAASWRDTLQVRLGPTLPELDEIPEICRHEVVEWDQHVTKXXXXXXXXXXXXXXVEKERLKELTFLDSKVMVAHYYPYCPQSDLTV 679
            DRA+E+K FD++K GVKGLVDSGV+ +PR F H P       +P  +       +P +DL G D    + R   +E+I   + + GFFQ++NHG+ +E+LE++   ++ FHEQ  EV+  FY RD      + SN DLF S AA+WRDT    + P  P+  ++PEICR  ++E+ + V                +E   L ++      +M++HYYP CP+ DLT+
Sbjct:   11 DRASELKAFDETKTGVKGLVDSGVSQVPRIF-HHPTVKLSTPKPLPSDLLHLKTIPTIDLGGRDFQDAIKRNNAIEEIKEAAAKWGFFQVINHGVSLELLEKMKKGVRDFHEQSQEVRKEFYSRDFSRRFLYLSNFDLFSSPAANWRDTFSCTMAPDTPKPQDLPEICRDIMMEYSKQVMNLGKFLFELLSEALGLEPNHLNDMDCSKGLLMLSHYYPPCPEPDLTL 236          
BLAST of DR403955 vs. ExPASy Swiss-Prot
Match: ACCH2_ARATH (1-aminocyclopropane-1-carboxylate oxidase homolog 2 OS=Arabidopsis thaliana GN=At1g06640 PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.502e-39
Identity = 84/226 (37.17%), Postives = 127/226 (56.19%), Query Frame = 2
Query:    5 DRATEVKQFDDSKIGVKGLVDSGVTTIPRFFIHSPDTLSDIRRPNSTTQPDPDVVPIVDLSGVDSD--LLRPTIVEKIARTSRELGFFQIVNHGIGVEVLERVIGAIKGFHEQPTEVKARFYRRDMKTGVSFFSNVDLFQSKAASWRDTLQVRLGPTLPELDEIPEICRHEVVEWDQHVTKXXXXXXXXXXXXXXVEKERLKELTFLDSKVMVAHYYPYCPQSDLT 676
            DRA+E+K FD++K GVKGLVDSG++ IPR F HS   L++  +P  +       +P +DL G D    +     +E I   + + GFFQ++NHG+ +E+LE++   ++ FHEQP EV+   Y RD      + SN DL+ + AA+WRDT    + P  PE  ++PEICR  ++E+ + V                +    LK++  L    M+ HY+P CP+ DLT
Sbjct:   11 DRASELKAFDETKTGVKGLVDSGISKIPRIFHHSSVELAN-PKPLPSDLLHLKTIPTIDLGGRDFQDAIKHKNAIEGIKEAAAKWGFFQVINHGVSLELLEKMKDGVRDFHEQPPEVRKDLYSRDFGRKFIYLSNFDLYTAAAANWRDTFYCYMAPDPPEPQDLPEICRDVMMEYSKQVMILGEFLFELLSEALGLNPNHLKDMECLKGLRMLCHYFPPCPEPDLT 235          
BLAST of DR403955 vs. ExPASy Swiss-Prot
Match: DV4H_CATRO (Deacetoxyvindoline 4-hydroxylase OS=Catharanthus roseus GN=D4H PE=1 SV=2)

HSP 1 Score: 154.836 bits (390), Expect = 4.090e-37
Identity = 78/223 (34.98%), Postives = 129/223 (57.85%), Query Frame = 2
Query:   17 EVKQFDDSKIGVKGLVDSGVTTIPRFFIHSPDTLSDIRRPNSTTQPDPDV-VPIVDLSGVDSDL-LRPTIVEKIARTSRELGFFQIVNHGIGVEVLERVIGAIKGFHEQPTEVKARFYRRD-MKTGVSFFSNVDLFQSKAASWRDTLQVRLGPTLPELDEIPEICRHEVVEWDQHVTKXXXXXXXXXXXXXXVEKERLKELTFLDSKVMVAHYYPYCPQSDLT 676
            E+K FD++K GVKG+VD+G+T IPR FI  P  L  I    S  +   D+ +P+++L+G+ S+  +R  IVEKI   S + GFFQIVNHGI  +V+++++  ++ FHEQ  ++K ++Y RD       + SN  L    A +WRDT++  +    P+  E P++CR  ++++  +V                ++   L+E+   +  +++ HYYP CPQ +LT
Sbjct:   44 ELKAFDETKAGVKGIVDTGITKIPRIFIDQPKNLDRI----SVCRGKSDIKIPVINLNGLSSNSEIRREIVEKIGEASEKYGFFQIVNHGIPQDVMDKMVDGVRKFHEQDDQIKRQYYSRDRFNKNFLYSSNYVLIPGIACNWRDTMECIMNSNQPDPQEFPDVCRDILMKYSNYVRNLGLILFELLSEALGLKPNHLEEMDCAEGLILLGHYYPACPQPELT 262          
BLAST of DR403955 vs. ExPASy Swiss-Prot
Match: ACCH3_SOLLC (1-aminocyclopropane-1-carboxylate oxidase homolog OS=Solanum lycopersicum GN=ACO3 PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.554e-36
Identity = 85/228 (37.28%), Postives = 125/228 (54.82%), Query Frame = 2
Query:    5 DRATEVKQFDDSKIGVKGLVDSGVTTIPRFFIHSPDTLSDIRRPNSTTQPDPDVVPIVDLSGVDSDLLR-PTIVEKIARTSRELGFFQIVNHGIGVEVLERVIGAIKGFHEQPTEVKARFYRRDMKTGVSFFSNVDLFQSK--AASWRDTLQVRLGPTLPELDEIPEICRHEVVEWDQHVTKXXXXXXXXXXXXXXVEKERLKELTFLDSKVMVAHYYPYCPQSDLTV 679
            D+ +E+K FDD+K GVKGLVDSG+T +P+ F+  P      R     T     V P++DL G+D D ++   IV+K+   S + GFFQ+VNHGI   VL+R +   + F EQ  EVK ++Y RD    V + SN+DL++S   AASWRDT+   + P  P L E P  C   ++++ + V K              +++  LK+           +YYP CPQ +LT+
Sbjct:   11 DKMSELKAFDDTKAGVKGLVDSGITKVPQIFVLPPKD----RAKKCETH---FVFPVIDLQGIDEDPIKHKEIVDKVRDASEKWGFFQVVNHGIPTSVLDRTLQGTRQFFEQDNEVKKQYYTRDTAKKVVYTSNLDLYKSSVPAASWRDTIFCYMAPNPPSLQEFPTPCGESLIDFSKDVKKLGFTLLELLSEGLGLDRSYLKDYMDCFHLFCSCNYYPPCPQPELTM 231          
The following BLAST results are available for this feature:
BLAST of DR403955 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
ACCH1_ARATH1.005e-4340.271-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
GSL_ARATH7.202e-4238.22Probable 2-oxoacid dependent dioxygenase OS=Arabid... [more]
ACCH3_ARATH9.407e-4237.441-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
ACCH2_ARATH1.502e-3937.171-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
DV4H_CATRO4.090e-3734.98Deacetoxyvindoline 4-hydroxylase OS=Catharanthus r... [more]
ACCH3_SOLLC1.554e-3637.281-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
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Properties
Property NameValue
Genbank descriptionCSAH-PNP1246N01 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone CSAH-PNP1246N01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403955 ID=DR403955; Name=DR403955; organism=Citrus sinensis; type=EST; length=708bp
GGGGGACAGAGCCACAGAAGTCAAACAATTCGACGACTCCAAAATCGGAG
TCAAAGGTCTAGTCGACTCCGGCGTCACCACCATCCCCCGCTTCTTCATC
CACTCACCCGACACACTATCAGACATTAGACGCCCCAATTCCACCACCCA
ACCCGACCCAGATGTCGTTCCCATTGTCGATTTGTCGGGCGTTGACTCTG
ACCTGCTGCGACCGACGATTGTGGAAAAGATTGCACGTACTTCGCGGGAA
TTGGGGTTTTTTCAGATTGTTAACCATGGGATTGGAGTTGAGGTTTTGGA
GCGTGTGATTGGGGCGATCAAAGGGTTTCATGAACAGCCCACGGAGGTCA
AGGCGAGGTTTTATCGGAGAGATATGAAGACCGGAGTATCCTTCTTCTCT
AACGTTGATTTGTTTCAGTCTAAAGCTGCTAGCTGGAGGGACACTCTGCA
GGTAAGGCTCGGTCCAACCTTACCAGAGCTCGATGAAATTCCTGAAATCT
GTAGACATGAGGTGGTGGAGTGGGACCAACATGTGACAAAACTGGGTGAG
CTGTTGATGGGGCTGTTGTGTGAAGGTTTGGGAGTAGAGAAAGAGAGGTT
GAAAGAGTTGACGTTTTTGGATTCCAAGGTGATGGTGGCTCATTACTACC
CGTATTGTCCACAGTCTGATCTGACGGTGGAATCACGTCTCATACAGACC
CCGGAGCG
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