CX069639

Overview
NameCX069639
Unique NameCX069639
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length707
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3683 contig Csv1_Contig3683:12..718. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX069639 vs. ExPASy Swiss-Prot
Match: RL12_PRUAR (60S ribosomal protein L12 OS=Prunus armeniaca GN=RPL12 PE=2 SV=1)

HSP 1 Score: 277.715 bits (709), Expect = 4.183e-74
Identity = 140/153 (91.50%), Postives = 148/153 (96.73%), Query Frame = 2
Query:    2 YVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIANVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIPLD 460
            YVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETA DWKGLRVTVKLTVQNRQAKV+VVPSAAALVIKALKEPERDRKKTKNIKH+G+I+LDDVIEIA +M+ RSMAK+L+GTVKEIL TCVSVGCTVDGKDPKDLQQEI DGDVEIPLD
Sbjct:   14 YVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETANDWKGLRVTVKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHSGHISLDDVIEIAKIMKHRSMAKELAGTVKEILRTCVSVGCTVDGKDPKDLQQEIADGDVEIPLD 166          
BLAST of CX069639 vs. ExPASy Swiss-Prot
Match: RL123_ARATH (60S ribosomal protein L12-3 OS=Arabidopsis thaliana GN=RPL12C PE=2 SV=1)

HSP 1 Score: 275.404 bits (703), Expect = 2.076e-73
Identity = 136/151 (90.07%), Postives = 145/151 (96.03%), Query Frame = 2
Query:    2 YVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIANVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIP 454
            YVRVTGGEVGAASSLAPKIGPLGL+PKKIGEDIAKETAK+WKGLRVTVKLTVQNRQAKV VVPSAAALVIKALKEPERDRKK KNIKHNGNI+ DDVIEIA +MRPRS+AK+LSGTVKEILGTCVSVGCTVDGKDPKDLQ+EI  GD++IP
Sbjct:   14 YVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVTVKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVIEIAKIMRPRSIAKELSGTVKEILGTCVSVGCTVDGKDPKDLQEEINSGDIDIP 164          
BLAST of CX069639 vs. ExPASy Swiss-Prot
Match: RL121_ARATH (60S ribosomal protein L12-1 OS=Arabidopsis thaliana GN=RPL12A PE=1 SV=2)

HSP 1 Score: 274.633 bits (701), Expect = 3.541e-73
Identity = 136/151 (90.07%), Postives = 145/151 (96.03%), Query Frame = 2
Query:    2 YVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIANVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIP 454
            YVRVTGGEVGAASSLAPKIGPLGL+PKKIGEDIAKETAK+WKGLRVTVKLTVQNRQAKV VVPSAAALVIKALKEPERDRKK KNIKHNGNI+ DDV EIA +MRPRS+AK+LSGTV+EILGTCVSVGCTVDGKDPKD+QQEI DG+VEIP
Sbjct:   14 YVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVTVKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVTEIARIMRPRSIAKELSGTVREILGTCVSVGCTVDGKDPKDIQQEIQDGEVEIP 164          
BLAST of CX069639 vs. ExPASy Swiss-Prot
Match: RL122_ARATH (60S ribosomal protein L12-2 OS=Arabidopsis thaliana GN=RPL12B PE=2 SV=1)

HSP 1 Score: 273.478 bits (698), Expect = 7.890e-73
Identity = 135/151 (89.40%), Postives = 145/151 (96.03%), Query Frame = 2
Query:    2 YVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIANVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIP 454
            YVRVTGGEVGAASSLAPKIGPLGL+PKKIGEDIAKETAK+WKGLRVTVKLTVQNRQAKV VVPSAAALVIKALKEPERDRKK KNIKHNGNI+ DDV EIA +MRPRS+AK+LSGTV+EILGTCVSVGCTVDGKDPKDLQQEI +G++EIP
Sbjct:   14 YVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVTVKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVTEIARIMRPRSIAKELSGTVREILGTCVSVGCTVDGKDPKDLQQEIQEGEIEIP 164          
BLAST of CX069639 vs. ExPASy Swiss-Prot
Match: RL12_CHLRE (60S ribosomal protein L12 (Fragment) OS=Chlamydomonas reinhardtii GN=RPL12 PE=2 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 3.322e-63
Identity = 120/150 (80.00%), Postives = 132/150 (88.00%), Query Frame = 2
Query:    5 VRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIANVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIP 454
            VRVTGGEVG ASSLAPKIGPLGLSPKKIGEDIAKET KDWKGLR+TVKLTVQNRQAK++V+PSAAALVIKALKEP RDRKK KNIKH G++T+ D+IEIA VMRPRS AKDL+   KEILGT VSVGC VDGKDP+D+   I DG +EIP
Sbjct:    6 VRVTGGEVGDASSLAPKIGPLGLSPKKIGEDIAKETLKDWKGLRITVKLTVQNRQAKISVIPSAAALVIKALKEPARDRKKEKNIKHTGSVTMSDIIEIARVMRPRSCAKDLANGCKEILGTAVSVGCKVDGKDPRDVISAIDDGAIEIP 155          
BLAST of CX069639 vs. ExPASy Swiss-Prot
Match: RL12_SCHPO (60S ribosomal protein L12 OS=Schizosaccharomyces pombe GN=rpl1201 PE=1 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 8.468e-59
Identity = 110/151 (72.85%), Postives = 133/151 (88.08%), Query Frame = 2
Query:    2 YVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIANVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIP 454
            ++R  GGEV   S+LAPKIGPLGLSPKK+GEDIAK T KDWKGLRVTVKLT+QNRQA V+VVPSA+ALVIKALKEP RDRKK KN+ H+GN++LD++IE+A  MR +S+AK+LSGTVKEILGT  SVGCTVDGK+P D+Q+EI +G++EIP
Sbjct:   14 FMRAVGGEVAGGSTLAPKIGPLGLSPKKVGEDIAKAT-KDWKGLRVTVKLTIQNRQAAVSVVPSASALVIKALKEPARDRKKDKNVAHSGNVSLDEIIEVARTMRFKSLAKELSGTVKEILGTAFSVGCTVDGKNPHDVQKEIDNGEIEIP 163          
BLAST of CX069639 vs. ExPASy Swiss-Prot
Match: RL12_CAEEL (60S ribosomal protein L12 OS=Caenorhabditis elegans GN=rpl-12 PE=2 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 4.647e-57
Identity = 105/151 (69.54%), Postives = 129/151 (85.43%), Query Frame = 2
Query:    2 YVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIANVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIP 454
            Y+R  GGEVGA S+LAPK+GPLGLSPKKIGEDIAK T +DWKGL+VT KLT+QNR AK+ VVPSAA+L++K LKEP RDRKK KN+KHNG++T+D +I+IA +MRPRSMAK L GTVKEILGT  SVGCT+DG+ P D+ + I +G++EIP
Sbjct:   14 YLRCVGGEVGATSALAPKVGPLGLSPKKIGEDIAKAT-QDWKGLKVTCKLTIQNRVAKIDVVPSAASLIVKELKEPPRDRKKVKNVKHNGDLTVDTIIKIARIMRPRSMAKKLEGTVKEILGTAQSVGCTIDGQHPHDIIESIANGEIEIP 163          
BLAST of CX069639 vs. ExPASy Swiss-Prot
Match: RL12_CAEBR (60S ribosomal protein L12 OS=Caenorhabditis briggsae GN=rpl-12 PE=3 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 4.647e-57
Identity = 105/151 (69.54%), Postives = 129/151 (85.43%), Query Frame = 2
Query:    2 YVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIANVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIP 454
            Y+R  GGEVGA S+LAPK+GPLGLSPKKIGEDIAK T +DWKGL+VT KLT+QNR AK+ VVPSAA+L++K LKEP RDRKK KN+KHNG++T+D +I+IA +MRPRSMAK L GTVKEILGT  SVGCT+DG+ P D+ + I +G++EIP
Sbjct:   14 YLRCVGGEVGATSALAPKVGPLGLSPKKIGEDIAKAT-QDWKGLKVTCKLTIQNRVAKIDVVPSAASLIVKELKEPPRDRKKVKNVKHNGDLTVDTIIKIARIMRPRSMAKKLEGTVKEILGTAQSVGCTIDGQHPHDIIESIANGEIEIP 163          
BLAST of CX069639 vs. ExPASy Swiss-Prot
Match: RL12_RAT (60S ribosomal protein L12 OS=Rattus norvegicus GN=Rpl12 PE=2 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 6.069e-57
Identity = 107/151 (70.86%), Postives = 127/151 (84.11%), Query Frame = 2
Query:    2 YVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIANVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIP 454
            Y+R TGGEVGA S+LAPKIGPLGLSPKK+G+DIAK T  DWKGLR+TVKLT+QNRQA++ VVPSA+AL+IKALKEP RDRKK KNIKHNGNIT D+++ IA  MR RS+A++LSGT+KEILGT  SVGC VDG+ P D+  +I  G VE P
Sbjct:   14 YLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATG-DWKGLRITVKLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHNGNITFDEIVNIARQMRHRSLARELSGTIKEILGTAQSVGCNVDGRHPHDIIDDINSGAVECP 163          
BLAST of CX069639 vs. ExPASy Swiss-Prot
Match: RL12_MOUSE (60S ribosomal protein L12 OS=Mus musculus GN=Rpl12 PE=1 SV=2)

HSP 1 Score: 218.779 bits (556), Expect = 2.306e-56
Identity = 106/151 (70.20%), Postives = 127/151 (84.11%), Query Frame = 2
Query:    2 YVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIANVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEIP 454
            Y+R TGGEVGA S+LAPKIGPLGLSPKK+G+DIAK T  DWKGLR+TVKLT+QNRQA++ VVPSA+AL+IKALKEP RDRKK KNIKH+GNIT D+++ IA  MR RS+A++LSGT+KEILGT  SVGC VDG+ P D+  +I  G VE P
Sbjct:   14 YLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATG-DWKGLRITVKLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVNIARQMRHRSLARELSGTIKEILGTAQSVGCNVDGRHPHDIIDDINSGAVECP 163          
The following BLAST results are available for this feature:
BLAST of CX069639 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
RL12_PRUAR4.183e-7491.5060S ribosomal protein L12 OS=Prunus armeniaca GN=R... [more]
RL123_ARATH2.076e-7390.0760S ribosomal protein L12-3 OS=Arabidopsis thalian... [more]
RL121_ARATH3.541e-7390.0760S ribosomal protein L12-1 OS=Arabidopsis thalian... [more]
RL122_ARATH7.890e-7389.4060S ribosomal protein L12-2 OS=Arabidopsis thalian... [more]
RL12_CHLRE3.322e-6380.0060S ribosomal protein L12 (Fragment) OS=Chlamydomo... [more]
RL12_SCHPO8.468e-5972.8560S ribosomal protein L12 OS=Schizosaccharomyces p... [more]
RL12_CAEEL4.647e-5769.5460S ribosomal protein L12 OS=Caenorhabditis elegan... [more]
RL12_CAEBR4.647e-5769.5460S ribosomal protein L12 OS=Caenorhabditis briggs... [more]
RL12_RAT6.069e-5770.8660S ribosomal protein L12 OS=Rattus norvegicus GN=... [more]
RL12_MOUSE2.306e-5670.2060S ribosomal protein L12 OS=Mus musculus GN=Rpl12... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_11H06_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-11H06-P11-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069639 ID=CX069639; Name=CX069639; organism=Citrus sinensis; type=EST; length=707bp
GTACGTCCGCGTGACCGGTGGCGAGGTGGGAGCCGCCAGTTCCCTCGCCC
CAAAGATCGGTCCCCTCGGTCTCTCCCCCAAGAAAATCGGAGAGGACATC
GCCAAGGAAACCGCCAAGGACTGGAAGGGCTTACGTGTCACCGTCAAGCT
CACCGTCCAGAACCGTCAGGCCAAGGTCGCCGTCGTTCCCTCCGCCGCCG
CCCTGGTCATTAAAGCCCTCAAGGAACCCGAGAGGGACAGGAAGAAGACC
AAGAACATCAAGCACAACGGCAACATTACCCTCGATGACGTCATCGAAAT
CGCAAATGTGATGCGGCCCAGGTCGATGGCTAAGGATTTGAGTGGCACCG
TTAAGGAGATTTTGGGCACATGCGTTTCTGTTGGGTGTACGGTCGATGGC
AAGGACCCTAAGGACCTGCAGCAGGAGATCACTGATGGTGATGTCGAAAT
TCCTCTTGATTGAAGACTCTGTTTGTGAGGGGGTCTATTTTAGATTTTAA
TTTTTGTTTTTTATTTCTATATATCAGTGCCTTTTTTTTTATTATCAGTT
TTGGATCTTTACAAGGATTTTGATGATGTCTCCAATTATTCGAGCTTTAA
ACGAGTGCTTTATTATTGGAATTTAGGAGATGTAAGGTTTAATTTAGTGG
ACTTATGTTGAATGATGCTTCAGAAAACGTATATTGGATCTTTGAAATTT
AAATTTT
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