CX069631

Overview
NameCX069631
Unique NameCX069631
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length741
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX069631_ssr601 microsatellite CX069631_ssr601:601..618. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4301 contig Csv1_Contig4301:4..744. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX069631 vs. ExPASy Swiss-Prot
Match: DNJ10_ARATH (Chaperone protein dnaJ 10 OS=Arabidopsis thaliana GN=ATJ10 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.219e-12
Identity = 47/120 (39.17%), Postives = 59/120 (49.17%), Query Frame = 1 
Query:    1 LSRVCQMVLQDNNXXXXXXXXXXXXXXTLGKIFQRAKSNNGSEGETVLSGGVHKLNGSDSCYDASSPITSPKSTEHQEXXXXXXXXXXPYVEAPNLSDAQFGRDFPIPTAPPGAQGHSST 360
            L RVCQ+VLQD                 LG+IFQRAK+   SE + + +    KLNG+   +D  +  TSPKS+E             PYVE   L D QF   FP P  PPGA  +SS+
Sbjct:  279 LCRVCQLVLQDPEAKREELRTRARGLKALGRIFQRAKT--ASESDPLENSEPQKLNGNGKNHDEDTS-TSPKSSEASHSTSGPQEPQSPYVEEFKLGDEQFNYYFPRPAPPPGAGKYSSS 395
The following BLAST results are available for this feature:
BLAST of CX069631 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
DNJ10_ARATH2.219e-1239.17Chaperone protein dnaJ 10 OS=Arabidopsis thaliana ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_11G12_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-11G12-N23-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069631 ID=CX069631; Name=CX069631; organism=Citrus sinensis; type=EST; length=741bp
CTTTCCCGAGTTTGTCAGATGGTTCTTCAAGATAACAATGCCAAGAAAGA
AGAGCTTCGTGCGCGAGCAAAAGCATTGAAAACCCTCGGCAAAATCTTCC
AGAGAGCCAAGTCAAACAATGGGAGTGAGGGTGAAACTGTGCTAAGTGGT
GGAGTGCATAAACTGAATGGAAGTGATTCATGCTATGATGCTTCTTCTCC
CATTACATCGCCAAAATCTACAGAGCATCAAGAATCATCCCAGTCTGCTT
TTGCATCTCAGAGCCCATATGTGGAAGCCCCCAACTTGTCAGATGCTCAG
TTTGGTCGTGACTTCCCAATACCAACAGCACCACCTGGTGCTCAAGGACA
TTCTTCTACAGTAGGGAAAGCACTCAAGCTTGCATTTGTTGGATAAGTCT
GTACCAGTAGACGATGTTGGAAGCACAACCCACTTCTAAGTGATAGGATT
AGCGTATTTTATTCAATCTGTGGGTCATGCATATACATAAAATGGAAGGT
ATTGCAGAAGATAGTTCTTTCTATTGGTTCAAAATAGGCTTCCATTGGCT
GCCTACTCATCATTTGAATTGAGTAATGTATTCCATTGCATTGATTTTCC
TGTGTGTGTGTGTGTGTGTTAATGAGTATGTTTCAGTCACGCTCACAGAT
GTACATTTATTTAGATTGAAGTTTTTGCTTAGTGTGTTATGTATCATTGC
TATATATTGATGATATCGTAATGTAATTTGCCCAAAAAAAA
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