CX069630

Overview
NameCX069630
Unique NameCX069630
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length762
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX069630_ssr141 microsatellite CX069630_ssr141:141..158. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4301 contig Csv1_Contig4301:1..762. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX069630 vs. ExPASy Swiss-Prot
Match: DNJ10_ARATH (Chaperone protein dnaJ 10 OS=Arabidopsis thaliana GN=ATJ10 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.336e-12
Identity = 49/120 (40.83%), Postives = 61/120 (50.83%), Query Frame = -1 
Query:  400 LSRVCQMVLQDNNXXXXXXXXXXXXXKTLGKIFQRAKSNNGSEGETVLSGGVHKLNGSDSCYDASSPITSPKSTEHQEXXXXXXXXXSPYVEAPNLSDAQFGRDFPIPTAPPGAQGHSST 759
            L RVCQ+VLQD               K LG+IFQRAK+   SE + + +    KLNG+   +D  +  TSPKS+E            SPYVE   L D QF   FP P  PPGA  +SS+
Sbjct:  279 LCRVCQLVLQDPEAKREELRTRARGLKALGRIFQRAKT--ASESDPLENSEPQKLNGNGKNHDEDTS-TSPKSSEASHSTSGPQEPQSPYVEEFKLGDEQFNYYFPRPAPPPGAGKYSSS 395
The following BLAST results are available for this feature:
BLAST of CX069630 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
DNJ10_ARATH2.336e-1240.83Chaperone protein dnaJ 10 OS=Arabidopsis thaliana ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_11G12_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-11G12-N23-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069630 ID=CX069630; Name=CX069630; organism=Citrus sinensis; type=EST; length=762bp
GTACCGCGGCCCCCCCTTTTTTTTTTGGGCAAATTACATTACGATATCAT
CAATATATAGCAATGATACATAACACACTAAGCAAAAACTTCAATCTAAA
TAAATGTACATCTGTGAGCGTGACTGAAACATACTCATTAACACACACAC
ACACACACAGGAAAATCAATGCAATGGAATACATTACTCAATTCAAATGA
TGAGTAGGCAGCCAATGGAAGCCTATTTTGAACCAATAGAAAGAACTATC
TTCTGCAATACCTTCCATTTTATGTATATGCATGACCCACAGATTGAATA
AAATACGCTAATCCTATCACTTAGAAGTGGGTTGTGCTTCCAACATCGTC
TACTGGTACAGACTTATCCAACAAATGCAAGCTTGAGTGCTTTCCCTACT
GTAGAAGAATGTCCTTGAGCACCAGGTGGTGCTGTTGGTATTGGGAAGTC
ACGACCAAACTGAGCATCTGACAAGTTGGGGGCTTCCACATATGGGCTCT
GAGATGCAAAAGCAGACTGGGATGATTCTTGATGCTCTGTAGATTTTGGC
GATGTAATGGGAGAAGAAGCATCATAGCATGAATCACTTCCATTCAGTTT
ATGCACTCCACCACTTAGCACAGTTTCACCCTCACTCCCATTGTTTGACT
TGGCTCTCTGGAAGATTTTGCCGAGGGTTTTCAATGCTTTTGCTCGCGCA
CGAAGCTCTTCTTTCTTGGCATTGTTATCTTGAAGAACCATCTGACAAAC
TCGGGAAAGCCT
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