CX069626

Overview
NameCX069626
Unique NameCX069626
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length818
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX069626 vs. ExPASy Swiss-Prot
Match: IPT2_ARATH (tRNA isopentenyltransferase 2 OS=Arabidopsis thaliana GN=IPT2 PE=1 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 1.056e-21
Identity = 52/100 (52.00%), Postives = 64/100 (64.00%), Query Frame = 3 
Query:    3 KSDEVWTAQVVGPAVKIIRAFLSEDERLMPNLAGMIGTSVNSTERDLWTQYVCKACGDKVLRGAYEWEQHKQGRRHRKRIYNLRKSQRFSSAGQQHQQQN 302
            KS+E W AQVV PA +IIR FL  +       +G   TS  S ERDLWTQYVC+ACG+K+LRG +EWE HKQGR HRKR    + SQ + +   Q  + N
Sbjct:  372 KSEESWNAQVVKPASEIIRCFLETETE-----SGRDPTSGKSIERDLWTQYVCEACGNKILRGRHEWEHHKQGRTHRKRTTRHKNSQTYKNREVQEAEVN 466
The following BLAST results are available for this feature:
BLAST of CX069626 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
IPT2_ARATH1.056e-2152.00tRNA isopentenyltransferase 2 OS=Arabidopsis thali... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_11G09_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-11G09-N17-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069626 ID=CX069626; Name=CX069626; organism=Citrus sinensis; type=EST; length=818bp
GCAAATCAGATGAAGTGTGGACTGCACAAGTGGTTGGACCTGCTGTGAAA
ATTATTAGAGCTTTCCTTAGTGAAGATGAAAGATTGATGCCTAATTTGGC
GGGTATGATTGGCACATCGGTGAATTCAACTGAAAGAGACTTGTGGACTC
AATATGTATGCAAGGCTTGTGGAGACAAGGTTCTTAGAGGTGCATACGAG
TGGGAGCAGCACAAACAGGGTCGCAGGCATCGAAAGCGAATTTATAATCT
TAGGAAGTCTCAGAGATTCAGCTCAGCAGGTCAGCAGCATCAACAGCAAA
ATACTTCTGTAGCTACAGAGCAATCTTCAATGTCATGCCAGGTTCAGATA
TAGAACTTGAATGTTGTCATTCTCGTCATTTGACTCCCTCAGTCCTATAA
ATATATTCTTCATTCTCATTGTTTCACTCTCTCAATCCTGTAAGTATATT
CTTTTTTGTTTGTTACAATCAATAGTTTAGCAGTTAGGTCATTACATTTA
GCAAAAACATTAAATCAACCAAACTAGGTACTCCAAAAAATTTAATCTAT
AAAAGAAAGCAATTAGACTTAAATTAATCTTCAAAAAACTATTGACAATA
TTTTATTACTACTTTTTCATTTCAATTTATTTGATACATATCTATATTGT
CTTTTCACGAATTACATATAGAACACGATGCTTAGTACATAAACATATAC
TGCTTCAACCAGAGATTTCAATGGCCTTGAGTTCAGGTTTTTTCACTTCT
TCCTTANGAACTGTAACAGTAAGAACTCCATCCTCAATAGAAGCCCTAAC
CTGATCAATCTTCCCATT
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